Rorug02G0446400

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011855
Physical Location & Seq
Reverse (-)
57297092 .. 57298120
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0446400.1

Sequence Viewer

Length: 1029 bp
ATGAAGAAGGTAGAAGCACTTGACCACCGCCACGTCACTTTCTCCAAGCGCAAGAAAGGACTTTTCCAAAAAGCCGACCAACTCAGCAGCCTCACTGGCACCGAAATCGCGGTGGTCGTTGTTTCCGAATGCGGCAGGGTTTTTGGCTTCGGCACCCCAAGCTGTGACGCCATCACCGATCGTTACCTTGCCGGGTTGTCTTCTAACCAAAATGCCAATTGCATCAGTTGTCAAGACGATATTGGATCTATGAATGTGGAAAGCATTCCTTCGACAAGTTTAAACTGTTCCCAAAATGACAATGTCCATTATCAAAACAATAGCGCCGTAGTCGGATCTATGATAGTTGAAACCAGTCCTTCGACTTCGAACTGTTCTCTGAATGAAAACAACGCTGCCGTGATCGGATGTATGCATATGATAGCTGAAACCACTGTTTCGAAGGATTCCCCCATTAGGGTTTTGGAGAACAATATTTTGGATGACGGAAAGTTGGAATTAATGGGCCCTAATGGCAATGCCGATTATCAAAACGACAATGCCGTGGTTGGATCTATAATCGTTGAAACCACTCCTTCCAGTTCAAACTTTCCCCAAAGCGACGGTGTAGTGGTCGGACCGAAGATAGTTGAAACGACTCCTTTGAGTTCGAGCTGTCCCGAAATTAGGGTTTTGGAGGACGATATAATGGGTGATGGATACTTTAATTTGATGAACGACACCGTTTTTCCTGTCAAGCCAGGCGAGTATCGCGAAGGGACTAATGGTGGATCTGAGGTGGGGGAGATGAGTGGGGAGATGATTGAGGAAATGATAGAGGAGATGATGAAAGAGAAAGACGACGTGCCGGGTTGTAATGAATTCATGACTGCCTTGATTAGGGTTTTACTTCCAACGACGACTTCAAATTACTATACCTCATTGTTGGTTATGGAGGATGAAGATGAACTTCTTATGGAAAATAGAGGGCTGGGGACTTGTCACTTCAACCCATATGGGGATTGGAGGTGTGGAGGCATATGCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

342

Amino Acids

37.09

Weight (kDa)

4.34

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 8 - 50 4.1e-17 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011855)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04220 AT4G12690 AT4G12690 AT5G48270
fragaria_vesca FvH4_6g40240
malus_domestica MD09G1133700.v1.1 MD17G1121100.v1.1 MD17G1122500.v1.1
prunus_persica Prupe.3G192800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155261
rosa_laevigata RLG00000020831
rosa_multiflora Rmu_sc0012066.1_g000008
rosa_roxburghii Rroxscaffold_2G00093820
rosa_rugosa Rorug02G0446400
rosa_samantha Rh2AG512900 Rh2BG523500 Rh2CG497900 Rh2DG533200
rosa_wichuraiana Rw2G042140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 98, 152
AccII CGCG 2 cut(s) 110, 753
AciI CCGC 3 cut(s) 28, 110, 132
AclWI GGATC 4 cut(s) 253, 343, 559, 778
AcsI RAATTY 1 cut(s) 860
AcyI GRCGYC 1 cut(s) 168
AfiI CCNNNNNNNGG 5 cut(s) 456, 457, 666, 879, 997
AgsI TTSAA 6 cut(s) 350, 566, 585, 632, 906, 988
AjiI CACGTC 2 cut(s) 34, 844
AjnI CCWGG 1 cut(s) 739
AjuI GAANNNNNNNTTGG 4 cut(s) 461, 493, 886, 918
AluBI AGCT 3 cut(s) 162, 425, 654
AluI AGCT 3 cut(s) 162, 425, 654
AlwI GGATC 4 cut(s) 253, 343, 559, 778
AoxI GGCC 1 cut(s) 505
ApaI GGGCCC 1 cut(s) 509
ApeKI GCWGC 2 cut(s) 87, 395
ApoI RAATTY 1 cut(s) 860
AseI ATTAAT 1 cut(s) 500
Asp700I GAANNNNTTC 1 cut(s) 264
AspLEI GCGC 2 cut(s) 51, 326
AspS9I GGNCC 3 cut(s) 505, 506, 617
AsuC2I CCSGG 2 cut(s) 193, 849
AsuHPI GGTGA 2 cut(s) 166, 704
AsuII TTCGAA 2 cut(s) 368, 440
AvaII GGWCC 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 509
BanI GGYRCC 2 cut(s) 98, 152
BanII GRGCYC 1 cut(s) 509
BbsI GAAGAC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 99, 382
BccI CCATC 2 cut(s) 179, 689
BceAI ACGGC 3 cut(s) 311, 383, 527
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BciT130I CCWGG 1 cut(s) 741
BciVI GTATCC 1 cut(s) 692
BcnI CCSGG 2 cut(s) 193, 849
BfoI RGCGCY 1 cut(s) 327
BfuI GTATCC 1 cut(s) 692
BglI GCCNNNNNGGC 2 cut(s) 96, 513
BisI GCNGC 3 cut(s) 88, 133, 396
BlsI GCNGC 3 cut(s) 89, 134, 397
Bme1390I CCNGG 3 cut(s) 193, 741, 849
Bme18I GGWCC 1 cut(s) 617
BmgBI CACGTC 2 cut(s) 34, 844
BmgT120I GGNCC 3 cut(s) 505, 506, 617
BmiI GGNNCC 3 cut(s) 100, 154, 507
BmrFI CCNGG 3 cut(s) 193, 741, 849
BmsI GCATC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 192
Bpu14I TTCGAA 2 cut(s) 368, 440
BpuMI CCSGG 2 cut(s) 193, 849
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 543
Bsc4I CCNNNNNNNGG 5 cut(s) 456, 457, 666, 879, 997
Bse1I ACTGG 3 cut(s) 100, 354, 579
Bse3DI GCAATG 1 cut(s) 523
BseBI CCWGG 1 cut(s) 741
BseDI CCNNGG 1 cut(s) 543
BseGI GGATG 3 cut(s) 413, 487, 943
BseLI CCNNNNNNNGG 5 cut(s) 456, 457, 666, 879, 997
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 2 cut(s) 97, 765
BseNI ACTGG 3 cut(s) 100, 354, 579
BseRI GAGGAG 1 cut(s) 833
BseSI GKGCMC 1 cut(s) 509
BseXI GCAGC 2 cut(s) 99, 382
BseYI CCCAGC 1 cut(s) 970
Bsh1236I CGCG 2 cut(s) 110, 753
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 1 cut(s) 507
BshNI GGYRCC 2 cut(s) 98, 152
BsiEI CGRYCG 1 cut(s) 181
BsiSI CCGG 2 cut(s) 192, 848
BslFI GGGAC 3 cut(s) 642, 772, 988
BslI CCNNNNNNNGG 5 cut(s) 456, 457, 666, 879, 997
BsmFI GGGAC 3 cut(s) 642, 772, 988
BsmI GAATGC 2 cut(s) 134, 264
BsnI GGCC 1 cut(s) 507
Bsp119I TTCGAA 2 cut(s) 368, 440
Bsp120I GGGCCC 1 cut(s) 505
Bsp1286I GDGCHC 1 cut(s) 509
Bsp143I GATC 6 cut(s) 178, 245, 335, 402, 551, 770
Bsp68I TCGCGA 1 cut(s) 753
BspACI CCGC 3 cut(s) 28, 110, 132
BspANI GGCC 1 cut(s) 507
BspCNI CTCAG 2 cut(s) 96, 766
BspFNI CGCG 2 cut(s) 110, 753
BspHI TCATGA 1 cut(s) 864
BspLI GGNNCC 3 cut(s) 100, 154, 507
BspPI GGATC 4 cut(s) 253, 343, 559, 778
BspT104I TTCGAA 2 cut(s) 368, 440
BspT107I GGYRCC 2 cut(s) 98, 152
BsrDI GCAATG 1 cut(s) 523
BsrI ACTGG 3 cut(s) 100, 354, 579
BssECI CCNNGG 1 cut(s) 543
BssMI GATC 6 cut(s) 178, 245, 335, 402, 551, 770
BssNI GRCGYC 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 741
Bst4CI ACNGT 5 cut(s) 287, 374, 436, 605, 724
BstACI GRCGYC 1 cut(s) 168
BstBI TTCGAA 2 cut(s) 368, 440
BstDEI CTNAG 2 cut(s) 83, 774
BstDSI CCRYGG 1 cut(s) 543
BstENI CCTNNNNNAGG 1 cut(s) 877
BstF5I GGATG 3 cut(s) 413, 487, 943
BstFNI CGCG 2 cut(s) 110, 753
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 2 cut(s) 51, 326
BstKTI GATC 6 cut(s) 181, 248, 338, 405, 554, 773
BstMBI GATC 6 cut(s) 178, 245, 335, 402, 551, 770
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 4 cut(s) 96, 159, 513, 750
BstNI CCWGG 1 cut(s) 741
BstSCI CCNGG 3 cut(s) 191, 739, 847
BstSLI GKGCMC 1 cut(s) 509
BstUI CGCG 2 cut(s) 110, 753
BstV1I GCAGC 2 cut(s) 99, 382
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 4 cut(s) 245, 335, 551, 770
BstYI RGATCY 4 cut(s) 245, 335, 551, 770
BsuI GTATCC 1 cut(s) 692
BsuRI GGCC 1 cut(s) 507
BtgI CCRYGG 1 cut(s) 543
BtrI CACGTC 2 cut(s) 34, 844
BtsCI GGATG 3 cut(s) 413, 487, 943
BtsIMutI CAGTG 2 cut(s) 93, 432
BtuMI TCGCGA 1 cut(s) 753
CciI TCATGA 1 cut(s) 864
CfoI GCGC 2 cut(s) 51, 326
Cfr13I GGNCC 3 cut(s) 505, 506, 617
CpoI CGGWCCG 1 cut(s) 617
CseI GACGC 1 cut(s) 176
CspI CGGWCCG 1 cut(s) 617
CviAII CATG 1 cut(s) 865
CviJI RGCY 9 cut(s) 74, 90, 147, 162, 425, 507, 654, 739, 970
CviKI_1 RGCY 9 cut(s) 74, 90, 147, 162, 425, 507, 654, 739, 970
DdeI CTNAG 2 cut(s) 83, 774
DpnI GATC 6 cut(s) 180, 247, 337, 404, 553, 772
DpnII GATC 6 cut(s) 178, 245, 335, 402, 551, 770
DraI TTTAAA 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 509
Eco47I GGWCC 1 cut(s) 617
EcoNI CCTNNNNNAGG 1 cut(s) 877
EcoO109I RGGNCCY 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 860
EcoRII CCWGG 1 cut(s) 739
EcoT22I ATGCAT 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 509
FaeI CATG 1 cut(s) 868
FalI AAGNNNNNCTT 4 cut(s) 253, 285, 933, 965
FaqI GGGAC 3 cut(s) 642, 772, 988
FatI CATG 1 cut(s) 864
FauNDI CATATG 3 cut(s) 417, 994, 1019
Fnu4HI GCNGC 3 cut(s) 88, 133, 396
FokI GGATG 3 cut(s) 420, 494, 950
FriOI GRGCYC 1 cut(s) 509
Fsp4HI GCNGC 3 cut(s) 88, 133, 396
GlaI GCGC 2 cut(s) 50, 325
GluI GCNGC 3 cut(s) 88, 133, 396
GsaI CCCAGC 1 cut(s) 974
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 1 cut(s) 507
HapII CCGG 2 cut(s) 192, 848
HgaI GACGC 1 cut(s) 176
HhaI GCGC 2 cut(s) 51, 326
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 1 cut(s) 868
Hin6I GCGC 2 cut(s) 49, 324
HinP1I GCGC 2 cut(s) 49, 324
HinfI GANTC 2 cut(s) 446, 637
HpaII CCGG 2 cut(s) 192, 848
HphI GGTGA 2 cut(s) 166, 704
Hpy188I TCNGA 6 cut(s) 127, 335, 381, 407, 617, 775
Hpy188III TCNNGA 4 cut(s) 233, 659, 752, 865
Hpy99I CGWCG 3 cut(s) 605, 845, 901
HpyAV CCTTC 5 cut(s) 279, 369, 436, 585, 749
HpyCH4III ACNGT 5 cut(s) 287, 374, 436, 605, 724
HpyCH4IV ACGT 2 cut(s) 33, 843
HpyCH4V TGCA 2 cut(s) 222, 415
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 159, 513, 750
HpyF3I CTNAG 2 cut(s) 83, 774
HpySE526I ACGT 2 cut(s) 33, 843
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 1 cut(s) 868
HspAI GCGC 2 cut(s) 49, 324
Kzo9I GATC 6 cut(s) 178, 245, 335, 402, 551, 770
Lsp1109I GCAGC 2 cut(s) 99, 382
LweI GCATC 1 cut(s) 231
MaeII ACGT 2 cut(s) 33, 843
MaeIII GTNAC 4 cut(s) 34, 164, 182, 980
MalI GATC 6 cut(s) 180, 247, 337, 404, 553, 772
MboI GATC 6 cut(s) 178, 245, 335, 402, 551, 770
MboII GAAGA 4 cut(s) 16, 192, 634, 953
MfeI CAATTG 1 cut(s) 217
MflI RGATCY 4 cut(s) 245, 335, 551, 770
MhlI GDGCHC 1 cut(s) 509
MluCI AATT 6 cut(s) 217, 497, 663, 706, 860, 907
MlyI GAGTC 1 cut(s) 631
MmeI TCCRAC 5 cut(s) 313, 474, 529, 595, 917
Mph1103I ATGCAT 1 cut(s) 417
MroXI GAANNNNTTC 1 cut(s) 264
MseI TTAA 4 cut(s) 281, 500, 705, 1027
MspI CCGG 2 cut(s) 192, 848
MspR9I CCNGG 3 cut(s) 193, 741, 849
MssI GTTTAAAC 1 cut(s) 282
MunI CAATTG 1 cut(s) 217
Mva1269I GAATGC 2 cut(s) 134, 264
MvaI CCWGG 1 cut(s) 741
MvnI CGCG 2 cut(s) 110, 753
MwoI GCNNNNNNNGC 4 cut(s) 96, 159, 513, 750
NciI CCSGG 2 cut(s) 193, 849
NdeI CATATG 3 cut(s) 417, 994, 1019
NdeII GATC 6 cut(s) 178, 245, 335, 402, 551, 770
NlaIII CATG 1 cut(s) 868
NlaIV GGNNCC 3 cut(s) 100, 154, 507
NmuCI GTSAC 3 cut(s) 34, 164, 980
NruI TCGCGA 1 cut(s) 753
NsiI ATGCAT 1 cut(s) 417
NspV TTCGAA 2 cut(s) 368, 440
PagI TCATGA 1 cut(s) 864
PcsI WCGNNNNNNNCGW 4 cut(s) 114, 123, 174, 540
PctI GAATGC 2 cut(s) 134, 264
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 446
PflFI GACNNNGTC 1 cut(s) 302
PkrI GCNGC 3 cut(s) 89, 134, 397
Ple19I CGATCG 1 cut(s) 181
PleI GAGTC 1 cut(s) 631
PmeI GTTTAAAC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 631
PshBI ATTAAT 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 739
PspFI CCCAGC 1 cut(s) 970
PspGI CCWGG 1 cut(s) 739
PspN4I GGNNCC 3 cut(s) 100, 154, 507
PspOMI GGGCCC 1 cut(s) 505
PspPI GGNCC 3 cut(s) 505, 506, 617
PsuI RGATCY 4 cut(s) 245, 335, 551, 770
PsyI GACNNNGTC 1 cut(s) 302
PvuI CGATCG 1 cut(s) 181
RruI TCGCGA 1 cut(s) 753
Rsr2I CGGWCCG 1 cut(s) 617
RsrII CGGWCCG 1 cut(s) 617
SaqAI TTAA 4 cut(s) 281, 500, 705, 1027
SatI GCNGC 3 cut(s) 88, 133, 396
Sau3AI GATC 6 cut(s) 178, 245, 335, 402, 551, 770
Sau96I GGNCC 3 cut(s) 505, 506, 617
SchI GAGTC 1 cut(s) 631
ScrFI CCNGG 3 cut(s) 193, 741, 849
SduI GDGCHC 1 cut(s) 509
SfaNI GCATC 1 cut(s) 231
SfuI TTCGAA 2 cut(s) 368, 440
SinI GGWCC 1 cut(s) 617
Sse9I AATT 6 cut(s) 217, 497, 663, 706, 860, 907
SsiI CCGC 3 cut(s) 28, 110, 132
SspI AATATT 1 cut(s) 475
StyD4I CCNGG 3 cut(s) 191, 739, 847
TaaI ACNGT 5 cut(s) 287, 374, 436, 605, 724
TaiI ACGT 2 cut(s) 36, 846
TaqI TCGA 5 cut(s) 272, 362, 368, 440, 650
TaqII GACCGA 1 cut(s) 634
TasI AATT 6 cut(s) 217, 497, 663, 706, 860, 907
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 4 cut(s) 281, 500, 705, 1027
Tru9I TTAA 4 cut(s) 281, 500, 705, 1027
TscAI CASTG 2 cut(s) 100, 439
TseFI GTSAC 3 cut(s) 34, 164, 980
TseI GCWGC 2 cut(s) 87, 395
Tsp45I GTSAC 3 cut(s) 34, 164, 980
TspDTI ATGAA 9 cut(s) 17, 266, 399, 728, 842, 853, 873, 954, 960
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 2 cut(s) 100, 439
Tth111I GACNNNGTC 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 617
VspI ATTAAT 1 cut(s) 500
XagI CCTNNNNNAGG 1 cut(s) 877
XapI RAATTY 1 cut(s) 860
XcmI CCANNNNNNNNNTGG 2 cut(s) 460, 999
XmnI GAANNNNTTC 1 cut(s) 264
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.