FvH4_6g40240

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011855
Physical Location & Seq
Reverse (-)
31757774 .. 31759617
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40240.t1

Sequence Viewer

Length: 939 bp
ATGCAGGCATTTAGTCGTTCGATGCGGGGTCATTCAATACATGAGCCTCCCCCATTAGCAGAGAAGCTCACCGATGACCCTGTGACGTCGAAAACGGCACAAAGCACGGTGACATGTGTTCATCTTGCCAACATTGCAATGAACTGGCGGAAGGTCACGGTCATTTGGTGCAAGAATCTCATGAACCATTCCTTGAGCGTAAGGATCGATAGTCTAGAAGGTGATTTTCATTACACTTGCAAGATTGACCTCAAGCCGTGGCATTTTTGGAGCAAAAAAGGGTACAAGTCATTTGCCGTTGAAGGGACTCATGTTGAAGTCTATTGGGACCTTCGGTCTGCTAAATTCGTAGGAGGTCCAGAACCGAATCATGACTTCTACGTTGCGCTTGTTTGCGATGAAGAAGTTGTGTTACTATTGGGAGACATGAAGAAAAAGGCTTACAAGAGAACCAAAGCAAGGCCATCAGTGGCTGAGGCCGTTATGTACTACAAAAAAGAAAACGTGTTTGCCAAGAAAAGCTTTTCCACTAGGGTGAGATTCGACGAGAAGAGGAAAGAGCATGACATTGTTGTGGAGAGCTCAACTTCGGGGCAAAAAGACCCCGAAATGTGGATTAGCATAGACGGCATTGTGTTGGTTCATGTCAAGAATTTGCAGTGGAAATTCAGAGGGAACCAGACTGTGATGGTGAACATGCTTCCTGTCCAGGTCTTTTGGGATGTTCATGACTGGCTTTTCAGTAGTCCAGGAACAGGTCATGGTCTGTTTATCTTCAAGCCCGGGGCGCCGGATTCGGAGGAGAACGATTATGACAGGGGAGATGGCGTCGATCAATGTGGAGACAGTGACAATGGCAGTGCCTATTTTTCAACTCGGAGTCTTAACACAACAGCTTCTGATTTCTGCTTGTTTCTTCATGCATATAAGCTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

313

Amino Acids

35.64

Weight (kDa)

6.89

Isoelectric Point (pI)

31.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 33 - 310 1e-107 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011855)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04220 AT4G12690 AT4G12690 AT5G48270
fragaria_vesca FvH4_6g40240
malus_domestica MD09G1133700.v1.1 MD17G1121100.v1.1 MD17G1122500.v1.1
prunus_persica Prupe.3G192800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155261
rosa_laevigata RLG00000020831
rosa_multiflora Rmu_sc0012066.1_g000008
rosa_roxburghii Rroxscaffold_2G00093820
rosa_rugosa Rorug02G0446400
rosa_samantha Rh2AG512900 Rh2BG523500 Rh2CG497900 Rh2DG533200
rosa_wichuraiana Rw2G042140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 787
AciI CCGC 2 cut(s) 25, 148
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 3 cut(s) 344, 652, 665
AcyI GRCGYC 3 cut(s) 86, 788, 828
AfaI GTAC 2 cut(s) 284, 488
AfiI CCNNNNNNNGG 4 cut(s) 303, 459, 612, 755
AflIII ACRYGT 2 cut(s) 113, 504
AgsI TTSAA 6 cut(s) 36, 302, 317, 778, 873, 935
AhdI GACNNNNNGTC 1 cut(s) 334
AjnI CCWGG 2 cut(s) 708, 748
AleI CACNNNNGTG 1 cut(s) 533
AluBI AGCT 5 cut(s) 67, 522, 582, 896, 931
AluI AGCT 5 cut(s) 67, 522, 582, 896, 931
Alw21I GWGCWC 1 cut(s) 584
Alw26I GTCTC 2 cut(s) 417, 837
AlwI GGATC 1 cut(s) 212
AlwNI CAGNNNCTG 2 cut(s) 473, 899
Ama87I CYCGRG 1 cut(s) 782
AoxI GGCC 2 cut(s) 461, 477
ApoI RAATTY 3 cut(s) 344, 652, 665
AspLEI GCGC 2 cut(s) 388, 790
AspS9I GGNCC 2 cut(s) 328, 356
AsuC2I CCSGG 2 cut(s) 783, 784
AsuHPI GGTGA 5 cut(s) 61, 121, 233, 547, 703
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 2 cut(s) 328, 356
BanI GGYRCC 1 cut(s) 787
BanII GRGCYC 1 cut(s) 584
BarI GAAGNNNNNNTAC 2 cut(s) 396, 428
Bbv12I GWGCWC 1 cut(s) 584
BbvCI CCTCAGC 1 cut(s) 474
BccI CCATC 3 cut(s) 472, 682, 818
BceAI ACGGC 5 cut(s) 111, 241, 281, 464, 643
BciT130I CCWGG 2 cut(s) 710, 750
BcnI CCSGG 2 cut(s) 783, 784
BcoDI GTCTC 2 cut(s) 417, 837
BfaI CTAG 2 cut(s) 215, 531
BfoI RGCGCY 1 cut(s) 791
Bme1390I CCNGG 4 cut(s) 710, 750, 783, 784
Bme18I GGWCC 2 cut(s) 328, 356
BmeRI GACNNNNNGTC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 782
BmgT120I GGNCC 2 cut(s) 328, 356
BmiI GGNNCC 3 cut(s) 329, 677, 789
BmrFI CCNGG 4 cut(s) 710, 750, 783, 784
BmsI GCATC 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 474
BpuEI CTTGAG 2 cut(s) 214, 236
BpuMI CCSGG 2 cut(s) 783, 784
Bsa29I ATCGAT 1 cut(s) 207
BsaHI GRCGYC 3 cut(s) 86, 788, 828
BsaJI CCNNGG 3 cut(s) 257, 782, 783
BsaXI ACNNNNNCTCC 2 cut(s) 813, 843
Bsc4I CCNNNNNNNGG 4 cut(s) 303, 459, 612, 755
Bse1I ACTGG 2 cut(s) 149, 737
Bse3DI GCAATG 2 cut(s) 132, 144
BseBI CCWGG 2 cut(s) 710, 750
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 3 cut(s) 257, 782, 783
BseGI GGATG 1 cut(s) 727
BseLI CCNNNNNNNGG 4 cut(s) 303, 459, 612, 755
BseMI GCAATG 2 cut(s) 132, 144
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 2 cut(s) 149, 737
BseRI GAGGAG 1 cut(s) 815
BshFI GGCC 2 cut(s) 463, 479
BshNI GGYRCC 1 cut(s) 787
BshVI ATCGAT 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 584
BsiHKCI CYCGRG 1 cut(s) 782
BsiSI CCGG 2 cut(s) 783, 791
BslFI GGGAC 2 cut(s) 319, 341
BslI CCNNNNNNNGG 4 cut(s) 303, 459, 612, 755
BsmAI GTCTC 2 cut(s) 417, 837
BsmFI GGGAC 2 cut(s) 319, 341
BsnI GGCC 2 cut(s) 463, 479
BsoBI CYCGRG 1 cut(s) 782
Bsp1286I GDGCHC 1 cut(s) 584
Bsp143I GATC 2 cut(s) 204, 832
BspACI CCGC 2 cut(s) 25, 148
BspANI GGCC 2 cut(s) 463, 479
BspCNI CTCAG 1 cut(s) 466
BspDI ATCGAT 1 cut(s) 207
BspHI TCATGA 3 cut(s) 180, 370, 727
BspLI GGNNCC 3 cut(s) 329, 677, 789
BspPI GGATC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 787
BsrDI GCAATG 2 cut(s) 132, 144
BsrI ACTGG 2 cut(s) 149, 737
BssECI CCNNGG 3 cut(s) 257, 782, 783
BssMI GATC 2 cut(s) 204, 832
BssNI GRCGYC 3 cut(s) 86, 788, 828
Bst2UI CCWGG 2 cut(s) 710, 750
Bst4CI ACNGT 4 cut(s) 109, 160, 685, 848
Bst6I CTCTTC 1 cut(s) 545
BstACI GRCGYC 3 cut(s) 86, 788, 828
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 474
BstDSI CCRYGG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 727
BstH2I RGCGCY 1 cut(s) 791
BstHHI GCGC 2 cut(s) 388, 790
BstKTI GATC 2 cut(s) 207, 835
BstMAI GTCTC 2 cut(s) 417, 837
BstMBI GATC 2 cut(s) 204, 832
BstMWI GCNNNNNNNGC 3 cut(s) 134, 627, 787
BstNI CCWGG 2 cut(s) 710, 750
BstNSI RCATGY 2 cut(s) 117, 700
BstSCI CCNGG 4 cut(s) 708, 748, 781, 782
Bsu15I ATCGAT 1 cut(s) 207
BsuRI GGCC 2 cut(s) 463, 479
BsuTUI ATCGAT 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 257
BtgZI GCGATG 1 cut(s) 411
BtsCI GGATG 1 cut(s) 727
BtsI GCAGTG 2 cut(s) 665, 865
BtsIMutI CAGTG 4 cut(s) 474, 665, 853, 865
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 2 cut(s) 473, 899
CciI TCATGA 3 cut(s) 180, 370, 727
CfoI GCGC 2 cut(s) 388, 790
Cfr13I GGNCC 2 cut(s) 328, 356
Cfr9I CCCGGG 1 cut(s) 782
ClaI ATCGAT 1 cut(s) 207
CseI GACGC 1 cut(s) 817
Csp6I GTAC 2 cut(s) 283, 487
CviQI GTAC 2 cut(s) 283, 487
DdeI CTNAG 1 cut(s) 474
DinI GGCGCC 1 cut(s) 789
DpnI GATC 2 cut(s) 206, 834
DpnII GATC 2 cut(s) 204, 832
DriI GACNNNNNGTC 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 545
Eam1105I GACNNNNNGTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 545
EciI GGCGGA 1 cut(s) 163
Ecl136II GAGCTC 1 cut(s) 582
Eco24I GRGCYC 1 cut(s) 584
Eco47I GGWCC 2 cut(s) 328, 356
Eco53kI GAGCTC 1 cut(s) 582
Eco88I CYCGRG 1 cut(s) 782
EcoICRI GAGCTC 1 cut(s) 582
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 708, 748
EcoT22I ATGCAT 1 cut(s) 925
EcoT38I GRGCYC 1 cut(s) 584
EgeI GGCGCC 1 cut(s) 789
EheI GGCGCC 1 cut(s) 789
FalI AAGNNNNNCTT 2 cut(s) 506, 538
FaqI GGGAC 2 cut(s) 319, 341
FauI CCCGC 1 cut(s) 18
FokI GGATG 1 cut(s) 734
FriOI GRGCYC 1 cut(s) 584
FspBI CTAG 2 cut(s) 215, 531
GlaI GCGC 2 cut(s) 387, 789
HaeII RGCGCY 1 cut(s) 791
HaeIII GGCC 2 cut(s) 463, 479
HapII CCGG 2 cut(s) 783, 791
HgaI GACGC 1 cut(s) 817
HhaI GCGC 2 cut(s) 388, 790
Hin1I GRCGYC 3 cut(s) 86, 788, 828
Hin6I GCGC 2 cut(s) 386, 788
HinP1I GCGC 2 cut(s) 386, 788
HindIII AAGCTT 2 cut(s) 520, 929
HinfI GANTC 6 cut(s) 175, 307, 367, 540, 794, 880
HpaII CCGG 2 cut(s) 783, 791
HphI GGTGA 5 cut(s) 61, 121, 233, 547, 703
Hpy166II GTNNAC 1 cut(s) 694
Hpy188I TCNGA 4 cut(s) 671, 799, 879, 901
Hpy188III TCNNGA 6 cut(s) 181, 215, 359, 371, 649, 728
Hpy8I GTNNAC 1 cut(s) 694
Hpy99I CGWCG 3 cut(s) 91, 548, 833
HpyAV CCTTC 4 cut(s) 145, 212, 296, 341
HpyCH4III ACNGT 4 cut(s) 109, 160, 685, 848
HpyCH4IV ACGT 3 cut(s) 86, 381, 504
HpyCH4V TGCA 6 cut(s) 4, 137, 171, 240, 658, 923
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 627, 787
HpyF3I CTNAG 1 cut(s) 474
HpySE526I ACGT 3 cut(s) 86, 381, 504
Hsp92I GRCGYC 3 cut(s) 86, 788, 828
HspAI GCGC 2 cut(s) 386, 788
KasI GGCGCC 1 cut(s) 787
Kzo9I GATC 2 cut(s) 204, 832
LmnI GCTCC 1 cut(s) 270
LweI GCATC 1 cut(s) 12
MaeI CTAG 2 cut(s) 215, 531
MaeII ACGT 3 cut(s) 86, 381, 504
MaeIII GTNAC 5 cut(s) 82, 109, 154, 411, 848
MalI GATC 2 cut(s) 206, 834
MboI GATC 2 cut(s) 204, 832
MboII GAAGA 5 cut(s) 413, 442, 562, 766, 908
MhlI GDGCHC 1 cut(s) 584
MluCI AATT 3 cut(s) 344, 652, 665
Mly113I GGCGCC 1 cut(s) 788
MlyI GAGTC 2 cut(s) 301, 889
MnlI CCTC 7 cut(s) 57, 260, 347, 469, 546, 665, 793
Mph1103I ATGCAT 1 cut(s) 925
MseI TTAA 1 cut(s) 885
MslI CAYNNNNRTG 3 cut(s) 137, 533, 572
MspI CCGG 2 cut(s) 783, 791
MspR9I CCNGG 4 cut(s) 710, 750, 783, 784
MvaI CCWGG 2 cut(s) 710, 750
MwoI GCNNNNNNNGC 3 cut(s) 134, 627, 787
NarI GGCGCC 1 cut(s) 788
NciI CCSGG 2 cut(s) 783, 784
NdeII GATC 2 cut(s) 204, 832
NlaIV GGNNCC 3 cut(s) 329, 677, 789
NmuCI GTSAC 4 cut(s) 82, 109, 154, 848
NsiI ATGCAT 1 cut(s) 925
NspI RCATGY 2 cut(s) 117, 700
OliI CACNNNNGTG 1 cut(s) 533
PagI TCATGA 3 cut(s) 180, 370, 727
PciI ACATGT 1 cut(s) 113
PfeI GAWTC 4 cut(s) 175, 367, 540, 794
PfoI TCCNGGA 1 cut(s) 748
PleI GAGTC 2 cut(s) 301, 888
PluTI GGCGCC 1 cut(s) 791
PpsI GAGTC 2 cut(s) 301, 888
PpuMI RGGWCCY 1 cut(s) 328
PscI ACATGT 1 cut(s) 113
Psp124BI GAGCTC 1 cut(s) 584
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 708, 748
PspGI CCWGG 2 cut(s) 708, 748
PspN4I GGNNCC 3 cut(s) 329, 677, 789
PspPI GGNCC 2 cut(s) 328, 356
PspPPI RGGWCCY 1 cut(s) 328
PstNI CAGNNNCTG 2 cut(s) 473, 899
RsaI GTAC 2 cut(s) 284, 488
RsaNI GTAC 2 cut(s) 283, 487
RseI CAYNNNNRTG 3 cut(s) 137, 533, 572
SacI GAGCTC 1 cut(s) 584
SaqAI TTAA 1 cut(s) 885
Sau3AI GATC 2 cut(s) 204, 832
Sau96I GGNCC 2 cut(s) 328, 356
SchI GAGTC 2 cut(s) 301, 889
ScrFI CCNGG 4 cut(s) 710, 750, 783, 784
SduI GDGCHC 1 cut(s) 584
SfaNI GCATC 1 cut(s) 12
SfoI GGCGCC 1 cut(s) 789
SinI GGWCC 2 cut(s) 328, 356
SmaI CCCGGG 1 cut(s) 784
SmiMI CAYNNNNRTG 3 cut(s) 137, 533, 572
SmlI CTYRAG 2 cut(s) 193, 251
SmoI CTYRAG 2 cut(s) 193, 251
Sse9I AATT 3 cut(s) 344, 652, 665
SsiI CCGC 2 cut(s) 25, 148
SspDI GGCGCC 1 cut(s) 787
SspMI CTAG 2 cut(s) 215, 531
SstI GAGCTC 1 cut(s) 584
StyD4I CCNGG 4 cut(s) 708, 748, 781, 782
TaaI ACNGT 4 cut(s) 109, 160, 685, 848
TaiI ACGT 3 cut(s) 89, 384, 507
TaqI TCGA 5 cut(s) 20, 89, 207, 543, 831
TaqII GACCGA 1 cut(s) 324
TasI AATT 3 cut(s) 344, 652, 665
TatI WGTACW 1 cut(s) 486
TfiI GAWTC 4 cut(s) 175, 367, 540, 794
Tru1I TTAA 1 cut(s) 885
Tru9I TTAA 1 cut(s) 885
TscAI CASTG 4 cut(s) 474, 665, 853, 865
TseFI GTSAC 4 cut(s) 82, 109, 154, 848
Tsp45I GTSAC 4 cut(s) 82, 109, 154, 848
TspDTI ATGAA 9 cut(s) 110, 155, 197, 218, 414, 443, 632, 716, 908
TspMI CCCGGG 1 cut(s) 782
TspRI CASTG 4 cut(s) 474, 665, 853, 865
VpaK11BI GGWCC 2 cut(s) 328, 356
XapI RAATTY 3 cut(s) 344, 652, 665
XbaI TCTAGA 1 cut(s) 214
XceI RCATGY 2 cut(s) 117, 700
XmaI CCCGGG 1 cut(s) 782
XspI CTAG 2 cut(s) 215, 531
ZraI GACGTC 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.