AT5G48270

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011855
Physical Location & Seq
Reverse (-)
19564422 .. 19565968
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48270.1

Sequence Viewer

Length: 969 bp
ATGTTGTCATTTCGAATGCCGTCTATCGGAAGCCAACCTACGGCATTTGCTGCAAAAATAACGGACAATCCAAAGACCGTGGCACAACTCAAGTCGGCTGCATCGCCTTCACCTCATAGTACCGTGACGTGCGGTTACCAAGCTCATGTGGCAGGGTTCTTTCGAAACGTCACCGTTTTATGGTCCAAGAATCTCATGAATCATTCCCTCACCGTAATGGTGTCGAGTTTAGACAATGACATGAATTATTGTTGTAAGATTGATCTCGTGAAGCCATGGCAGTTTTGGAGCAAAAGAGGGTCAAAGTCATTCGACGTAGAGGGAAACTTTGTGGAGGTCTTTTGGGATCTTCGATCAGCAAAATTGGCTGGAAACGGTAGCCCCGAACCCGTGTCAGACTATTACGTGGCAGTAGTTTCTGATGAAGAGGTTGTTTTATTGTTGGGAGATTTAAAGCAAAAGGCTTATAAGCGGACCAAGTCAAGACCGGCATTGGTGGAAGGGTTCATATACTTTAAAAAAGAAAGCATATTTGGGAAGAAAACGTTTTCGACTCGGGCAAGGTTTGACGAACAAAGAAAGGAACATGAAGTGGTGGTGGAGAGCTCTAATGGAGCAGCGGAGCCAGAGATGTGGATAAGCGTTGATGGGATCGTGGTTGTGAACGTGAAGAATCTACAATGGAAATTTAGGGGAAACCAAATGGTGATGGTGGATAGAACACCGGTAATGGTCTACTATGATGTTCATGATTGGTTGTTTGCAAGTTCGGAGACTGCAGCGAGTTCAGGGTTGTTTTTGTTTAAGCCTGTTCCGGTTGGAGCGATGGTAGATGAGAGCTTTAGCGATGCGGAGGAAGGAGATAGCGGAGGAGGGAGTAGTCCTTTGAGTCGTTATAATTCAGCATCAAGTGGTTTTGGACCATTGCATGACTTTTGTTTGTTTCTTTATGCTTGGAAACTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

322

Amino Acids

35.87

Weight (kDa)

6.33

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 38 - 320 3.3e-98 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011855)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04220 AT4G12690 AT4G12690 AT5G48270
fragaria_vesca FvH4_6g40240
malus_domestica MD09G1133700.v1.1 MD17G1121100.v1.1 MD17G1122500.v1.1
prunus_persica Prupe.3G192800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155261
rosa_laevigata RLG00000020831
rosa_multiflora Rmu_sc0012066.1_g000008
rosa_roxburghii Rroxscaffold_2G00093820
rosa_rugosa Rorug02G0446400
rosa_samantha Rh2AG512900 Rh2BG523500 Rh2CG497900 Rh2DG533200
rosa_wichuraiana Rw2G042140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 468, 897
AccI GTMKAC 1 cut(s) 735
AciI CCGC 5 cut(s) 132, 472, 620, 851, 867
AclI AACGTT 1 cut(s) 545
AclWI GGATC 2 cut(s) 354, 659
AcsI RAATTY 1 cut(s) 686
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 3 cut(s) 26, 40, 180
AgeI ACCGGT 1 cut(s) 724
AgsI TTSAA 1 cut(s) 965
AjiI CACGTC 1 cut(s) 129
AjuI GAANNNNNNNTTGG 2 cut(s) 516, 548
AluBI AGCT 3 cut(s) 143, 606, 840
AluI AGCT 3 cut(s) 143, 606, 840
Alw21I GWGCWC 1 cut(s) 608
Alw26I GTCTC 1 cut(s) 767
AlwI GGATC 2 cut(s) 354, 659
Ama87I CYCGRG 1 cut(s) 555
ApeKI GCWGC 4 cut(s) 50, 98, 617, 779
ApoI RAATTY 1 cut(s) 686
AsiGI ACCGGT 1 cut(s) 724
AspS9I GGNCC 3 cut(s) 183, 474, 920
AsuHPI GGTGA 4 cut(s) 102, 163, 202, 718
AsuII TTCGAA 2 cut(s) 13, 163
AvaI CYCGRG 1 cut(s) 555
AvaII GGWCC 3 cut(s) 183, 474, 920
BanII GRGCYC 1 cut(s) 608
BarI GAAGNNNNNNTAC 2 cut(s) 22, 54
BauI CACGAG 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 608
BbvI GCAGC 4 cut(s) 37, 85, 629, 791
BccI CCATC 3 cut(s) 641, 703, 820
BceAI ACGGC 2 cut(s) 4, 57
BcoDI GTCTC 1 cut(s) 767
BfmI CTRYAG 1 cut(s) 777
BisI GCNGC 4 cut(s) 51, 99, 618, 780
BlsI GCNGC 4 cut(s) 52, 100, 619, 781
Bme18I GGWCC 3 cut(s) 183, 474, 920
BmeT110I CYCGRG 1 cut(s) 555
BmgBI CACGTC 1 cut(s) 129
BmgT120I GGNCC 3 cut(s) 183, 474, 920
BmiI GGNNCC 1 cut(s) 624
BmsI GCATC 3 cut(s) 110, 838, 914
Bpu14I TTCGAA 2 cut(s) 13, 163
BpuEI CTTGAG 1 cut(s) 74
BsaAI YACGTR 1 cut(s) 406
BsaJI CCNNGG 2 cut(s) 78, 275
BsaWI WCCGGW 2 cut(s) 724, 814
BsaXI ACNNNNNCTCC 2 cut(s) 813, 843
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 40, 180
Bse118I RCCGGY 2 cut(s) 487, 724
Bse3DI GCAATG 1 cut(s) 923
BseDI CCNNGG 2 cut(s) 78, 275
BseLI CCNNNNNNNGG 3 cut(s) 26, 40, 180
BseMI GCAATG 1 cut(s) 923
BseRI GAGGAG 1 cut(s) 885
BseXI GCAGC 4 cut(s) 37, 85, 629, 791
BshTI ACCGGT 1 cut(s) 724
BsiHKAI GWGCWC 1 cut(s) 608
BsiHKCI CYCGRG 1 cut(s) 555
BsiSI CCGG 3 cut(s) 488, 725, 815
BslI CCNNNNNNNGG 3 cut(s) 26, 40, 180
BsmAI GTCTC 1 cut(s) 767
BsmI GAATGC 1 cut(s) 21
BsoBI CYCGRG 1 cut(s) 555
Bsp119I TTCGAA 2 cut(s) 13, 163
Bsp1286I GDGCHC 1 cut(s) 608
Bsp143I GATC 4 cut(s) 262, 346, 353, 651
Bsp19I CCATGG 1 cut(s) 275
BspACI CCGC 5 cut(s) 132, 472, 620, 851, 867
BspHI TCATGA 2 cut(s) 195, 748
BspLI GGNNCC 1 cut(s) 624
BspMAI CTGCAG 1 cut(s) 781
BspPI GGATC 2 cut(s) 354, 659
BspT104I TTCGAA 2 cut(s) 13, 163
BsrDI GCAATG 1 cut(s) 923
BsrFI RCCGGY 2 cut(s) 487, 724
BssAI RCCGGY 2 cut(s) 487, 724
BssECI CCNNGG 2 cut(s) 78, 275
BssMI GATC 4 cut(s) 262, 346, 353, 651
BssSI CACGAG 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 275
Bst2BI CACGAG 1 cut(s) 266
Bst4CI ACNGT 5 cut(s) 79, 124, 175, 214, 377
Bst6I CTCTTC 1 cut(s) 420
BstAPI GCANNNNNTGC 1 cut(s) 50
BstBAI YACGTR 1 cut(s) 406
BstBI TTCGAA 2 cut(s) 13, 163
BstDSI CCRYGG 2 cut(s) 78, 275
BstEII GGTNACC 1 cut(s) 134
BstKTI GATC 4 cut(s) 265, 349, 356, 654
BstMAI GTCTC 1 cut(s) 767
BstMBI GATC 4 cut(s) 262, 346, 353, 651
BstMWI GCNNNNNNNGC 3 cut(s) 50, 149, 365
BstPI GGTNACC 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 777
BstV1I GCAGC 4 cut(s) 37, 85, 629, 791
BstX2I RGATCY 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 633
BstYI RGATCY 1 cut(s) 346
BtgI CCRYGG 2 cut(s) 78, 275
BtgZI GCGATG 3 cut(s) 87, 839, 861
BtrI CACGTC 1 cut(s) 129
CciI TCATGA 2 cut(s) 195, 748
Cfr10I RCCGGY 2 cut(s) 487, 724
Cfr13I GGNCC 3 cut(s) 183, 474, 920
Csp6I GTAC 1 cut(s) 120
CspAI ACCGGT 1 cut(s) 724
CspCI CAANNNNNGTGG 2 cut(s) 60, 95
CviAII CATG 7 cut(s) 146, 196, 241, 276, 587, 749, 929
CviQI GTAC 1 cut(s) 120
DpnI GATC 4 cut(s) 264, 348, 355, 653
DpnII GATC 4 cut(s) 262, 346, 353, 651
DraI TTTAAA 2 cut(s) 453, 517
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
Ecl136II GAGCTC 1 cut(s) 606
Eco130I CCWWGG 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 608
Eco47I GGWCC 3 cut(s) 183, 474, 920
Eco53kI GAGCTC 1 cut(s) 606
Eco88I CYCGRG 1 cut(s) 555
Eco91I GGTNACC 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 606
EcoO65I GGTNACC 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 608
ErhI CCWWGG 1 cut(s) 275
FaeI CATG 7 cut(s) 149, 199, 244, 279, 590, 752, 932
FatI CATG 7 cut(s) 145, 195, 240, 275, 586, 748, 928
FblI GTMKAC 1 cut(s) 735
Fnu4HI GCNGC 4 cut(s) 51, 99, 618, 780
FriOI GRGCYC 1 cut(s) 608
Fsp4HI GCNGC 4 cut(s) 51, 99, 618, 780
GluI GCNGC 4 cut(s) 51, 99, 618, 780
HapII CCGG 3 cut(s) 488, 725, 815
Hin1II CATG 7 cut(s) 149, 199, 244, 279, 590, 752, 932
HinfI GANTC 5 cut(s) 190, 199, 553, 673, 889
HpaII CCGG 3 cut(s) 488, 725, 815
HphI GGTGA 4 cut(s) 102, 163, 202, 718
Hpy166II GTNNAC 2 cut(s) 664, 736
Hpy188I TCNGA 4 cut(s) 29, 397, 421, 772
Hpy188III TCNNGA 4 cut(s) 196, 268, 483, 749
Hpy8I GTNNAC 2 cut(s) 664, 736
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 3 cut(s) 117, 494, 851
HpyCH4III ACNGT 5 cut(s) 79, 124, 175, 214, 377
HpyCH4IV ACGT 6 cut(s) 128, 168, 315, 405, 545, 666
HpyCH4V TGCA 5 cut(s) 53, 101, 764, 779, 928
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 149, 365
HpySE526I ACGT 6 cut(s) 128, 168, 315, 405, 545, 666
Hsp92II CATG 7 cut(s) 149, 199, 244, 279, 590, 752, 932
Kzo9I GATC 4 cut(s) 262, 346, 353, 651
LmnI GCTCC 4 cut(s) 288, 614, 622, 821
LpnPI CCDG 8 cut(s) 138, 354, 501, 639, 738, 774, 822, 828
Lsp1109I GCAGC 4 cut(s) 37, 85, 629, 791
LweI GCATC 3 cut(s) 110, 838, 914
MaeII ACGT 6 cut(s) 128, 168, 315, 405, 545, 666
MaeIII GTNAC 3 cut(s) 124, 134, 169
MalI GATC 4 cut(s) 264, 348, 355, 653
MboI GATC 4 cut(s) 262, 346, 353, 651
MboII GAAGA 4 cut(s) 341, 437, 550, 682
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 608
MluCI AATT 4 cut(s) 244, 362, 686, 898
MlyI GAGTC 2 cut(s) 547, 898
MmeI TCCRAC 1 cut(s) 799
MnlI CCTC 9 cut(s) 123, 218, 290, 313, 328, 421, 847, 863, 866
MseI TTAA 3 cut(s) 452, 516, 804
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 3 cut(s) 488, 725, 815
Mva1269I GAATGC 1 cut(s) 21
MwoI GCNNNNNNNGC 3 cut(s) 50, 149, 365
NcoI CCATGG 1 cut(s) 275
NdeII GATC 4 cut(s) 262, 346, 353, 651
NlaIII CATG 7 cut(s) 149, 199, 244, 279, 590, 752, 932
NlaIV GGNNCC 1 cut(s) 624
NmuCI GTSAC 2 cut(s) 124, 169
NspV TTCGAA 2 cut(s) 13, 163
PagI TCATGA 2 cut(s) 195, 748
PcsI WCGNNNNNNNCGW 1 cut(s) 381
PctI GAATGC 1 cut(s) 21
PfeI GAWTC 3 cut(s) 190, 199, 673
PflFI GACNNNGTC 1 cut(s) 478
PinAI ACCGGT 1 cut(s) 724
PkrI GCNGC 4 cut(s) 52, 100, 619, 781
PleI GAGTC 2 cut(s) 547, 897
PpsI GAGTC 2 cut(s) 547, 897
Ppu21I YACGTR 1 cut(s) 406
PsiI TTATAA 2 cut(s) 468, 897
Psp124BI GAGCTC 1 cut(s) 608
Psp1406I AACGTT 1 cut(s) 545
PspEI GGTNACC 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 624
PspPI GGNCC 3 cut(s) 183, 474, 920
PstI CTGCAG 1 cut(s) 781
PsuI RGATCY 1 cut(s) 346
PsyI GACNNNGTC 1 cut(s) 478
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 215
SacI GAGCTC 1 cut(s) 608
SaqAI TTAA 3 cut(s) 452, 516, 804
SatI GCNGC 4 cut(s) 51, 99, 618, 780
Sau3AI GATC 4 cut(s) 262, 346, 353, 651
Sau96I GGNCC 3 cut(s) 183, 474, 920
SchI GAGTC 2 cut(s) 547, 898
SduI GDGCHC 1 cut(s) 608
SfaNI GCATC 3 cut(s) 110, 838, 914
SfcI CTRYAG 1 cut(s) 777
SfuI TTCGAA 2 cut(s) 13, 163
SinI GGWCC 3 cut(s) 183, 474, 920
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 4 cut(s) 244, 362, 686, 898
SsiI CCGC 5 cut(s) 132, 472, 620, 851, 867
SstI GAGCTC 1 cut(s) 608
StyI CCWWGG 1 cut(s) 275
TaaI ACNGT 5 cut(s) 79, 124, 175, 214, 377
TaiI ACGT 6 cut(s) 131, 171, 318, 408, 548, 669
TaqI TCGA 6 cut(s) 13, 163, 224, 312, 352, 551
TasI AATT 4 cut(s) 244, 362, 686, 898
TfiI GAWTC 3 cut(s) 190, 199, 673
Tru1I TTAA 3 cut(s) 452, 516, 804
Tru9I TTAA 3 cut(s) 452, 516, 804
TseFI GTSAC 2 cut(s) 124, 169
TseI GCWGC 4 cut(s) 50, 98, 617, 779
Tsp45I GTSAC 2 cut(s) 124, 169
TspDTI ATGAA 6 cut(s) 212, 257, 438, 496, 603, 737
TspGWI ACGGA 1 cut(s) 77
Tth111I GACNNNGTC 1 cut(s) 478
VpaK11BI GGWCC 3 cut(s) 183, 474, 920
XapI RAATTY 1 cut(s) 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XmiI GTMKAC 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.