AT4G12710

Armadillo/beta-catenin-like repeats

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
7484668 .. 7486829
2162 bp
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UTR
Exon/CDS
Intron
AT4G12710.1

Sequence Viewer

Length: 1209 bp
ATGGTGGTGGAAGAGAACCAGAATCAGATGATGGCTTCCATCGCCGGCGACTCAACGGTGACGGCAAATATATCGGAAGAAGACGAAGCAGAGGAGGAAACCACCACCAACACATGGAAAACCACAAAGGAATTACTGATTCTACATCTCTCCAAGAAGCTTCTCCATGGAGATCTCGATTTCCGAATTGAAGCCGCTAAGGAAATCCGAAAGCTGCTTAGAAAGTCTCCGGTTAAGTCTTCCGCTAGGTCAAAACTCGCCGACGCCGGCGTTATCCCGCCGCTTGTTCCCATGCTCTTCTCCTCTAACGTTGATGCTCGTCACGCCTCTCTCCTCGCTCTCCTTAACCTCGCCGTTAGAAATGAACGGAATAAGATTGAGATTGTGAAAGCCGGTGCCGTTCCACCTCTCATACAGATTCTGAAGCTCCACAATGCTAGTTTGCGTGAATTGGCCACTGCAGCAATTCTAACACTTTCAGCTGCACCAGCCAACAAGGCGATGATTATAAGTTCTGGAGTTCCACCGCTTCTGATTCAGATGCTTAGCTCCGGAACTGTACAAGGGAAAGTAGATGCTGTCACAGCCCTTCATAATTTATCAGCTTGCAAAGAGTACTCTGCTCCAATTCTTGATGCTAAAGCTGTCTACCCGCTCATCCACCTCCTTAAAGAATGCAAAAAACATTCCAAGTTTGCTGAAAAAGCCACAGCCTTGGTTGAGATGATCCTGTCTCACTCTGAGGACGGGCGAAATGCCATCACCAGCTGTGAAGATGGTATTCTGACTTTAGTAGAGACTGTAGAGGATGGTTCTCCACTCAGCATAGAACACGCAGTTGGAGCTCTGCTTTCTCTATGCCGCAGCGACCGAGATAAGTACCGAAAACTCATACTGAAAGAAGGTGCAATCCCGGGTCTCCTAAGTTCAACAGTAGATGGAACATCAAAGTCCCGAGATAGAGCCAGAGTTCTCTTGGACCTACTGAGAGAAACCCCTCGTGAGAAAGAAATGACTCCATTAACACTAGAGAAAATTGTCTATGGCATTGCAGTACAAGTCGACGGGGCAGAAAAAGCTGCTGAAACGGCTAAGAAACTGCTGCAGGACATGGTTCATAGAAGCATGGAGCTGAGCATGAAAAGCATCCAGCACAAGGCTGCGTCTTGTGCATCTATTCCTGATATCTCTTCCAAATCGAATAGCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

402

Amino Acids

43.52

Weight (kDa)

7.68

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 121 - 318 4.9e-12 ARMC5
Arm PF00514 163 - 202 7.7e-07 Armadillo/beta-catenin-like repeat
ARM_PUB PF25598 193 - 334 3e-10 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 395
AccB7I CCANNNNNTGG 1 cut(s) 114
AccBSI CCGCTC 1 cut(s) 655
AccI GTMKAC 2 cut(s) 648, 1062
AccIII TCCGGA 1 cut(s) 551
AciI CCGC 7 cut(s) 195, 243, 278, 281, 527, 653, 862
AclI AACGTT 1 cut(s) 309
AclWI GGATC 1 cut(s) 721
AcoI YGGCCR 1 cut(s) 453
AcuI CTGAAG 1 cut(s) 443
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 4 cut(s) 561, 617, 881, 1056
AfiI CCNNNNNNNGG 2 cut(s) 114, 1156
AgsI TTSAA 2 cut(s) 191, 930
AjuI GAANNNNNNNTTGG 2 cut(s) 822, 854
Alw21I GWGCWC 1 cut(s) 847
Alw26I GTCTC 4 cut(s) 231, 738, 791, 923
AlwI GGATC 1 cut(s) 721
AlwNI CAGNNNCTG 1 cut(s) 421
Ama87I CYCGRG 2 cut(s) 913, 954
Aor13HI TCCGGA 1 cut(s) 551
AoxI GGCC 1 cut(s) 453
ApeKI GCWGC 7 cut(s) 214, 461, 482, 864, 1079, 1102, 1160
AspS9I GGNCC 1 cut(s) 979
AsuC2I CCSGG 2 cut(s) 914, 915
AsuHPI GGTGA 2 cut(s) 70, 754
AvaI CYCGRG 2 cut(s) 913, 954
AvaII GGWCC 1 cut(s) 979
BalI TGGCCA 1 cut(s) 455
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 847
BauI CACGAG 1 cut(s) 999
BbsI GAAGAC 2 cut(s) 87, 231
Bbv12I GWGCWC 1 cut(s) 847
BbvI GCAGC 7 cut(s) 201, 469, 473, 876, 1066, 1089, 1147
BccI CCATC 6 cut(s) 25, 47, 767, 770, 803, 932
BceAI ACGGC 4 cut(s) 78, 338, 383, 1104
BcgI CGANNNNNNTGC 2 cut(s) 54, 88
BcnI CCSGG 2 cut(s) 914, 915
BcoDI GTCTC 4 cut(s) 231, 738, 791, 923
BfaI CTAG 3 cut(s) 246, 438, 1028
BfmI CTRYAG 3 cut(s) 459, 801, 1103
BglI GCCNNNNNGGC 1 cut(s) 497
BglII AGATCT 1 cut(s) 172
BlpI GCTNAGC 2 cut(s) 545, 1133
BmcAI AGTACT 1 cut(s) 617
Bme1390I CCNGG 2 cut(s) 914, 915
Bme18I GGWCC 1 cut(s) 979
BmeT110I CYCGRG 2 cut(s) 913, 954
BmgT120I GGNCC 1 cut(s) 979
BmiI GGNNCC 1 cut(s) 397
BmrFI CCNGG 2 cut(s) 914, 915
BmsI GCATC 6 cut(s) 304, 531, 565, 625, 1155, 1181
BpiI GAAGAC 2 cut(s) 87, 231
BpmI CTGGAG 1 cut(s) 537
Bpu10I CCTNAGC 1 cut(s) 198
Bpu1102I GCTNAGC 2 cut(s) 545, 1133
BpuMI CCSGG 2 cut(s) 914, 915
BsaHI GRCGYC 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 923
BsaJI CCNNGG 3 cut(s) 166, 714, 913
BsaWI WCCGGW 2 cut(s) 229, 551
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 1156
Bse118I RCCGGY 3 cut(s) 44, 266, 392
Bse3DI GCAATG 1 cut(s) 1047
BseAI TCCGGA 1 cut(s) 551
BseDI CCNNGG 3 cut(s) 166, 714, 913
BseGI GGATG 3 cut(s) 657, 814, 1146
BseLI CCNNNNNNNGG 2 cut(s) 114, 1156
BseMI GCAATG 1 cut(s) 1047
BseMII CTCAG 4 cut(s) 732, 835, 977, 1124
BseRI GAGGAG 3 cut(s) 107, 292, 323
BseXI GCAGC 7 cut(s) 201, 469, 473, 876, 1066, 1089, 1147
BsgI GTGCAG 1 cut(s) 468
Bsh1285I CGRYCG 1 cut(s) 871
BshFI GGCC 1 cut(s) 455
BshNI GGYRCC 1 cut(s) 395
BsiEI CGRYCG 1 cut(s) 871
BsiHKAI GWGCWC 1 cut(s) 847
BsiHKCI CYCGRG 2 cut(s) 913, 954
BsiSI CCGG 6 cut(s) 45, 230, 267, 393, 552, 914
BslFI GGGAC 1 cut(s) 937
BslI CCNNNNNNNGG 2 cut(s) 114, 1156
BsmAI GTCTC 4 cut(s) 231, 738, 791, 923
BsmFI GGGAC 1 cut(s) 937
BsmI GAATGC 1 cut(s) 680
BsnI GGCC 1 cut(s) 455
Bso31I GGTCTC 1 cut(s) 923
BsoBI CYCGRG 2 cut(s) 913, 954
Bsp1286I GDGCHC 1 cut(s) 847
Bsp13I TCCGGA 1 cut(s) 551
Bsp1407I TGTACA 1 cut(s) 559
Bsp143I GATC 2 cut(s) 172, 726
Bsp1720I GCTNAGC 2 cut(s) 545, 1133
Bsp19I CCATGG 1 cut(s) 166
BspACI CCGC 7 cut(s) 195, 243, 278, 281, 527, 653, 862
BspANI GGCC 1 cut(s) 455
BspCNI CTCAG 4 cut(s) 733, 834, 978, 1125
BspEI TCCGGA 1 cut(s) 551
BspLI GGNNCC 1 cut(s) 397
BspMAI CTGCAG 2 cut(s) 463, 1107
BspPI GGATC 1 cut(s) 721
BspQI GCTCTTC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 395
BspTNI GGTCTC 1 cut(s) 923
BsrBI CCGCTC 1 cut(s) 655
BsrDI GCAATG 1 cut(s) 1047
BsrFI RCCGGY 3 cut(s) 44, 266, 392
BsrGI TGTACA 1 cut(s) 559
BssAI RCCGGY 3 cut(s) 44, 266, 392
BssECI CCNNGG 3 cut(s) 166, 714, 913
BssMI GATC 2 cut(s) 172, 726
BssNI GRCGYC 1 cut(s) 264
BssSI CACGAG 1 cut(s) 999
BssT1I CCWWGG 2 cut(s) 166, 714
Bst2BI CACGAG 1 cut(s) 999
Bst4CI ACNGT 4 cut(s) 58, 559, 802, 934
Bst6I CTCTTC 3 cut(s) 6, 302, 1195
BstACI GRCGYC 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 559
BstC8I GCNNGC 3 cut(s) 46, 268, 607
BstDEI CTNAG 9 cut(s) 198, 218, 545, 741, 821, 923, 986, 1092, 1133
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 3 cut(s) 657, 814, 1146
BstKTI GATC 2 cut(s) 175, 729
BstMAI GTCTC 4 cut(s) 231, 738, 791, 923
BstMBI GATC 2 cut(s) 172, 726
BstMCI CGRYCG 1 cut(s) 871
BstSCI CCNGG 2 cut(s) 912, 913
BstSFI CTRYAG 3 cut(s) 459, 801, 1103
BstV1I GCAGC 7 cut(s) 201, 469, 473, 876, 1066, 1089, 1147
BstV2I GAAGAC 2 cut(s) 87, 231
BstX2I RGATCY 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 715
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 1 cut(s) 455
BtgI CCRYGG 1 cut(s) 166
BtgZI GCGATG 2 cut(s) 25, 515
BtsCI GGATG 3 cut(s) 657, 814, 1146
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 3 cut(s) 46, 268, 607
CaiI CAGNNNCTG 1 cut(s) 421
Cfr10I RCCGGY 3 cut(s) 44, 266, 392
Cfr13I GGNCC 1 cut(s) 979
Cfr9I CCCGGG 1 cut(s) 913
CseI GACGC 2 cut(s) 272, 1152
Csp6I GTAC 4 cut(s) 560, 616, 880, 1055
CviAII CATG 6 cut(s) 114, 167, 292, 1111, 1126, 1138
CviQI GTAC 4 cut(s) 560, 616, 880, 1055
DdeI CTNAG 9 cut(s) 198, 218, 545, 741, 821, 923, 986, 1092, 1133
DpnI GATC 2 cut(s) 174, 728
DpnII GATC 2 cut(s) 172, 726
EaeI YGGCCR 1 cut(s) 453
Eam1104I CTCTTC 3 cut(s) 6, 302, 1195
EarI CTCTTC 3 cut(s) 6, 302, 1195
Ecl136II GAGCTC 1 cut(s) 845
Eco130I CCWWGG 2 cut(s) 166, 714
Eco24I GRGCYC 1 cut(s) 847
Eco31I GGTCTC 1 cut(s) 923
Eco32I GATATC 1 cut(s) 1186
Eco47I GGWCC 1 cut(s) 979
Eco53kI GAGCTC 1 cut(s) 845
Eco57I CTGAAG 1 cut(s) 443
Eco88I CYCGRG 2 cut(s) 913, 954
EcoICRI GAGCTC 1 cut(s) 845
EcoRV GATATC 1 cut(s) 1186
EcoT14I CCWWGG 2 cut(s) 166, 714
EcoT38I GRGCYC 1 cut(s) 847
ErhI CCWWGG 2 cut(s) 166, 714
FaeI CATG 6 cut(s) 117, 170, 295, 1114, 1129, 1141
FaqI GGGAC 1 cut(s) 937
FatI CATG 6 cut(s) 113, 166, 291, 1110, 1125, 1137
FauI CCCGC 2 cut(s) 285, 660
FblI GTMKAC 2 cut(s) 648, 1062
FokI GGATG 3 cut(s) 644, 821, 1133
FriOI GRGCYC 1 cut(s) 847
FspBI CTAG 3 cut(s) 246, 438, 1028
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 1 cut(s) 455
HapII CCGG 6 cut(s) 45, 230, 267, 393, 552, 914
HgaI GACGC 2 cut(s) 272, 1152
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 6 cut(s) 117, 170, 295, 1114, 1129, 1141
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 6 cut(s) 22, 50, 139, 418, 535, 1015
HpaII CCGG 6 cut(s) 45, 230, 267, 393, 552, 914
HphI GGTGA 2 cut(s) 70, 754
Hpy166II GTNNAC 2 cut(s) 649, 1063
Hpy188I TCNGA 9 cut(s) 27, 76, 185, 209, 423, 534, 540, 742, 786
Hpy188III TCNNGA 7 cut(s) 176, 516, 552, 632, 954, 1001, 1181
Hpy8I GTNNAC 2 cut(s) 649, 1063
Hpy99I CGWCG 2 cut(s) 266, 1067
HpyAV CCTTC 2 cut(s) 599, 896
HpyCH4III ACNGT 4 cut(s) 58, 559, 802, 934
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 8 cut(s) 461, 485, 609, 678, 908, 1052, 1105, 1172
HpyF3I CTNAG 9 cut(s) 198, 218, 545, 741, 821, 923, 986, 1092, 1133
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 6 cut(s) 117, 170, 295, 1114, 1129, 1141
Kpn2I TCCGGA 1 cut(s) 551
KroI GCCGGC 2 cut(s) 44, 266
KroNI GCCGGC 2 cut(s) 46, 268
Kzo9I GATC 2 cut(s) 172, 726
LguI GCTCTTC 1 cut(s) 302
LmnI GCTCC 5 cut(s) 432, 554, 628, 842, 1129
Lsp1109I GCAGC 7 cut(s) 201, 469, 473, 876, 1066, 1089, 1147
LweI GCATC 6 cut(s) 304, 531, 565, 625, 1155, 1181
MaeI CTAG 3 cut(s) 246, 438, 1028
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 3 cut(s) 58, 320, 580
MalI GATC 2 cut(s) 174, 728
MbiI CCGCTC 1 cut(s) 655
MboI GATC 2 cut(s) 172, 726
MboII GAAGA 7 cut(s) 23, 89, 92, 231, 289, 785, 1182
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 847
MlsI TGGCCA 1 cut(s) 455
MluCI AATT 7 cut(s) 131, 186, 449, 465, 595, 627, 1035
MluNI TGGCCA 1 cut(s) 455
MlyI GAGTC 2 cut(s) 44, 1009
MmeI TCCRAC 1 cut(s) 820
Mox20I TGGCCA 1 cut(s) 455
MreI CGCCGGCG 2 cut(s) 44, 266
MroI TCCGGA 1 cut(s) 551
MroNI GCCGGC 2 cut(s) 44, 266
MscI TGGCCA 1 cut(s) 455
MseI TTAA 4 cut(s) 234, 345, 669, 1022
Msp20I TGGCCA 1 cut(s) 455
MspA1I CMGCKG 2 cut(s) 482, 768
MspI CCGG 6 cut(s) 45, 230, 267, 393, 552, 914
MspR9I CCNGG 2 cut(s) 914, 915
Mva1269I GAATGC 1 cut(s) 680
NaeI GCCGGC 2 cut(s) 46, 268
NciI CCSGG 2 cut(s) 914, 915
NcoI CCATGG 1 cut(s) 166
NdeII GATC 2 cut(s) 172, 726
NgoMIV GCCGGC 2 cut(s) 44, 266
NlaIII CATG 6 cut(s) 117, 170, 295, 1114, 1129, 1141
NlaIV GGNNCC 1 cut(s) 397
NmuCI GTSAC 3 cut(s) 58, 320, 580
PciSI GCTCTTC 1 cut(s) 302
PctI GAATGC 1 cut(s) 680
PdiI GCCGGC 2 cut(s) 46, 268
PfeI GAWTC 4 cut(s) 22, 139, 418, 535
PflMI CCANNNNNTGG 1 cut(s) 114
PleI GAGTC 2 cut(s) 44, 1009
PpsI GAGTC 2 cut(s) 44, 1009
PsiI TTATAA 1 cut(s) 509
Psp124BI GAGCTC 1 cut(s) 847
Psp1406I AACGTT 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 397
PspPI GGNCC 1 cut(s) 979
PstI CTGCAG 2 cut(s) 463, 1107
PstNI CAGNNNCTG 1 cut(s) 421
PsuI RGATCY 1 cut(s) 172
PvuII CAGCTG 2 cut(s) 482, 768
RsaI GTAC 4 cut(s) 561, 617, 881, 1056
RsaNI GTAC 4 cut(s) 560, 616, 880, 1055
SacI GAGCTC 1 cut(s) 847
SalI GTCGAC 1 cut(s) 1061
SapI GCTCTTC 1 cut(s) 302
SaqAI TTAA 4 cut(s) 234, 345, 669, 1022
Sau3AI GATC 2 cut(s) 172, 726
Sau96I GGNCC 1 cut(s) 979
ScaI AGTACT 1 cut(s) 617
SchI GAGTC 2 cut(s) 44, 1009
ScrFI CCNGG 2 cut(s) 914, 915
SduI GDGCHC 1 cut(s) 847
SfaNI GCATC 6 cut(s) 304, 531, 565, 625, 1155, 1181
SfcI CTRYAG 3 cut(s) 459, 801, 1103
SgrAI CRCCGGYG 2 cut(s) 44, 266
SinI GGWCC 1 cut(s) 979
SmaI CCCGGG 1 cut(s) 915
Sse9I AATT 7 cut(s) 131, 186, 449, 465, 595, 627, 1035
SsiI CCGC 7 cut(s) 195, 243, 278, 281, 527, 653, 862
SspMI CTAG 3 cut(s) 246, 438, 1028
SstI GAGCTC 1 cut(s) 847
StyD4I CCNGG 2 cut(s) 912, 913
StyI CCWWGG 2 cut(s) 166, 714
TaaI ACNGT 4 cut(s) 58, 559, 802, 934
TaiI ACGT 1 cut(s) 312
TaqI TCGA 3 cut(s) 177, 1062, 1199
TaqII GACCGA 1 cut(s) 885
TasI AATT 7 cut(s) 131, 186, 449, 465, 595, 627, 1035
TatI WGTACW 3 cut(s) 559, 615, 1054
TauI GCSGC 3 cut(s) 197, 283, 864
TfiI GAWTC 4 cut(s) 22, 139, 418, 535
Tru1I TTAA 4 cut(s) 234, 345, 669, 1022
Tru9I TTAA 4 cut(s) 234, 345, 669, 1022
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 3 cut(s) 58, 320, 580
TseI GCWGC 7 cut(s) 214, 461, 482, 864, 1079, 1102, 1160
Tsp45I GTSAC 3 cut(s) 58, 320, 580
TspDTI ATGAA 4 cut(s) 378, 581, 1106, 1154
TspGWI ACGGA 1 cut(s) 382
TspMI CCCGGG 1 cut(s) 913
TspRI CASTG 1 cut(s) 463
Van91I CCANNNNNTGG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 979
XcmI CCANNNNNNNNNTGG 1 cut(s) 973
XmaI CCCGGG 1 cut(s) 913
XmiI GTMKAC 2 cut(s) 648, 1062
XspI CTAG 3 cut(s) 246, 438, 1028
ZrmI AGTACT 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.