Rorug02G0448900

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008308
Physical Location & Seq
Reverse (-)
57588527 .. 57590255
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0448900.1

Sequence Viewer

Length: 1116 bp
ATGACAACTTCAAGGTTTCAAATATATATCTTGGCCTTTTATGCAAGCCTTCTTGTTTTAAAATGTAGCTGCCTTGGCAATTCTGTGCATCAGAGAAAACATGCAGCCTTGTTCATCTTTGGTGATGCACTATTTGATAATGGAAACAATAACTACTTAAACACTACTACTAAATATCAGTCAAATTTCTGGCCCTATGGGGAAACCTTCTTCAACCACTCAACTGGTAGATTTTCAGATGGGCGTCTAATCTCTGATTTCATCGCTGAGTATGCTAAGTTGCCACTTATACCACCATATTTACAACCTGGGTCCAAAGACTATACTTACGGGATCAACTTTGCATCTTCGGCTGCTGGTGCTCTAGCCAAGACTCATCCAGGATTTGTGATAGACCTTACAACTCAACTAAGTTATTTCAAGAAGGTGGAGAAGCACTTGAGGCACAAGCTAGGTGATGATAATGCTCACACATTGCTGTCCGAAGCGGTTTACTTAATTAGCATCGGAGGCAATGATTATTTTGCACCCTTTGTAAAAAACTCCAGTTTTTATGAGACTCAATCACCAGAAAAATTTGTTGGCATGGTGATTGGCAACCTAACGAATGTGATCAAAGGAATATATAAGAAAGGAGGAAGGAAATTTGGGTTTGCAAATGGAATCCCTCTTGGTTGTGTACCAATGATGAGGGCAACAAAGCCGGGAAACCCAGGCACCTGTGTGGATGAAATTACTGCAGTATTGAAACTGCACAATAAAGTACTTGCTAAAGTCCTCCTCAAGCTTAAACGACAGCTTCATGGATTTAAATATTCAAATCCAAATGTCTACTCTTACCTAGATGGAATCATTAAGAATCCATCACAACATGGCTTCAAGGAAGGAAAGGTGTCATGTTGTGGCTCTGGTCCATACAGAGGAACTATGAGCTGTGGAGGAAAGAGAGGTGTGACCGAGTATCAATTATGTGACAATGTTAACGATTATGTCTTTTTCGACTCTGCCCATCCAACCGACAGGGCTAACGAGCAGGTTTCCAAGTATTGGTGGAGCCATACTACTCCTAATGTGAAAGTGCCTCACGTTTATCTGAAAGAGCTATTCGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

371

Amino Acids

41.47

Weight (kDa)

9.25

Isoelectric Point (pI)

20.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 37 - 349 9.5e-26 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1024
AccB1I GGYRCC 1 cut(s) 716
AccB7I CCANNNNNTGG 1 cut(s) 1047
AccI GTMKAC 1 cut(s) 831
AciI CCGC 1 cut(s) 488
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 3 cut(s) 184, 575, 644
AcyI GRCGYC 1 cut(s) 244
AfaI GTAC 2 cut(s) 681, 765
AfiI CCNNNNNNNGG 2 cut(s) 920, 1047
AgsI TTSAA 7 cut(s) 12, 20, 214, 421, 748, 819, 880
AjnI CCWGG 3 cut(s) 307, 379, 712
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
AleI CACNNNNGTG 1 cut(s) 722
AluBI AGCT 6 cut(s) 69, 451, 787, 799, 933, 1102
AluI AGCT 6 cut(s) 69, 451, 787, 799, 933, 1102
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 1 cut(s) 551
AlwI GGATC 1 cut(s) 341
AoxI GGCC 2 cut(s) 33, 191
ApeKI GCWGC 3 cut(s) 69, 104, 353
ApoI RAATTY 3 cut(s) 184, 575, 644
AspS9I GGNCC 3 cut(s) 192, 312, 911
AsuC2I CCSGG 1 cut(s) 705
AsuHPI GGTGA 4 cut(s) 134, 467, 558, 601
AsuII TTCGAA 1 cut(s) 1107
AvaII GGWCC 2 cut(s) 312, 911
BanI GGYRCC 1 cut(s) 716
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 3 cut(s) 56, 116, 340
BccI CCATC 4 cut(s) 233, 839, 871, 1017
BciT130I CCWGG 3 cut(s) 309, 381, 714
BclI TGATCA 1 cut(s) 612
BcnI CCSGG 1 cut(s) 705
BcoDI GTCTC 1 cut(s) 551
BfaI CTAG 3 cut(s) 365, 452, 842
BfmI CTRYAG 1 cut(s) 738
BfuAI ACCTGC 1 cut(s) 1024
BisI GCNGC 3 cut(s) 70, 105, 354
BlsI GCNGC 3 cut(s) 71, 106, 355
BmcAI AGTACT 1 cut(s) 765
Bme1390I CCNGG 4 cut(s) 309, 381, 705, 714
Bme18I GGWCC 2 cut(s) 312, 911
BmgT120I GGNCC 3 cut(s) 192, 312, 911
BmiI GGNNCC 3 cut(s) 313, 718, 1055
BmrFI CCNGG 4 cut(s) 309, 381, 705, 714
BmsI GCATC 4 cut(s) 97, 115, 353, 513
BpmI CTGGAG 1 cut(s) 529
Bpu14I TTCGAA 1 cut(s) 1107
BpuEI CTTGAG 2 cut(s) 460, 767
BpuMI CCSGG 1 cut(s) 705
BsaHI GRCGYC 1 cut(s) 244
BsaJI CCNNGG 3 cut(s) 73, 308, 712
Bsc4I CCNNNNNNNGG 2 cut(s) 920, 1047
Bse1I ACTGG 2 cut(s) 229, 546
Bse3DI GCAATG 2 cut(s) 473, 520
BseBI CCWGG 3 cut(s) 309, 381, 714
BseDI CCNNGG 3 cut(s) 73, 308, 712
BseGI GGATG 3 cut(s) 376, 733, 1009
BseLI CCNNNNNNNGG 2 cut(s) 920, 1047
BseMI GCAATG 2 cut(s) 473, 520
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 229, 546
BseRI GAGGAG 1 cut(s) 770
BseXI GCAGC 3 cut(s) 56, 116, 340
BsgI GTGCAG 1 cut(s) 737
BshFI GGCC 2 cut(s) 35, 193
BshNI GGYRCC 1 cut(s) 716
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 1 cut(s) 704
BslI CCNNNNNNNGG 2 cut(s) 920, 1047
BsmAI GTCTC 1 cut(s) 551
BsnI GGCC 2 cut(s) 35, 193
Bsp119I TTCGAA 1 cut(s) 1107
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 2 cut(s) 333, 612
BspACI CCGC 1 cut(s) 488
BspANI GGCC 2 cut(s) 35, 193
BspCNI CTCAG 1 cut(s) 259
BspLI GGNNCC 3 cut(s) 313, 718, 1055
BspMAI CTGCAG 1 cut(s) 742
BspMI ACCTGC 1 cut(s) 1024
BspPI GGATC 1 cut(s) 341
BspT104I TTCGAA 1 cut(s) 1107
BspT107I GGYRCC 1 cut(s) 716
BsrDI GCAATG 2 cut(s) 473, 520
BsrI ACTGG 2 cut(s) 229, 546
BssECI CCNNGG 3 cut(s) 73, 308, 712
BssMI GATC 2 cut(s) 333, 612
BssNI GRCGYC 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 3 cut(s) 309, 381, 714
BstACI GRCGYC 1 cut(s) 244
BstBI TTCGAA 1 cut(s) 1107
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 3 cut(s) 267, 276, 410
BstF5I GGATG 3 cut(s) 376, 733, 1009
BstKTI GATC 2 cut(s) 336, 615
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 2 cut(s) 333, 612
BstMWI GCNNNNNNNGC 7 cut(s) 41, 75, 272, 350, 359, 442, 510
BstNI CCWGG 3 cut(s) 309, 381, 714
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 4 cut(s) 307, 379, 703, 712
BstSFI CTRYAG 1 cut(s) 738
BstV1I GCAGC 3 cut(s) 56, 116, 340
BstXI CCANNNNNNTGG 1 cut(s) 224
BsuRI GGCC 2 cut(s) 35, 193
BtgZI GCGATG 1 cut(s) 247
BtsCI GGATG 3 cut(s) 376, 733, 1009
BveI ACCTGC 1 cut(s) 1024
Cac8I GCNNGC 1 cut(s) 46
Cfr13I GGNCC 3 cut(s) 192, 312, 911
CseI GACGC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 680, 764
CviAII CATG 5 cut(s) 101, 586, 803, 872, 897
CviQI GTAC 2 cut(s) 680, 764
DdeI CTNAG 3 cut(s) 267, 276, 410
DpnI GATC 2 cut(s) 335, 614
DpnII GATC 2 cut(s) 333, 612
DraI TTTAAA 2 cut(s) 60, 811
Eco130I CCWWGG 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 312, 911
EcoRII CCWGG 3 cut(s) 307, 379, 712
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 5 cut(s) 104, 589, 806, 875, 900
FatI CATG 5 cut(s) 100, 585, 802, 871, 896
FbaI TGATCA 1 cut(s) 612
FblI GTMKAC 1 cut(s) 831
Fnu4HI GCNGC 3 cut(s) 70, 105, 354
FokI GGATG 3 cut(s) 363, 740, 996
Fsp4HI GCNGC 3 cut(s) 70, 105, 354
FspBI CTAG 3 cut(s) 365, 452, 842
GluI GCNGC 3 cut(s) 70, 105, 354
GsuI CTGGAG 1 cut(s) 529
HaeIII GGCC 2 cut(s) 35, 193
HapII CCGG 1 cut(s) 704
HgaI GACGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 244
Hin1II CATG 5 cut(s) 104, 589, 806, 875, 900
HincII GTYRAC 1 cut(s) 982
HindII GTYRAC 1 cut(s) 982
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 6 cut(s) 373, 559, 663, 849, 859, 1001
HpaI GTTAAC 1 cut(s) 982
HpaII CCGG 1 cut(s) 704
HphI GGTGA 4 cut(s) 134, 467, 558, 601
Hpy166II GTNNAC 4 cut(s) 493, 680, 832, 982
Hpy188I TCNGA 6 cut(s) 93, 238, 256, 484, 509, 1095
Hpy188III TCNNGA 1 cut(s) 421
Hpy8I GTNNAC 4 cut(s) 493, 680, 832, 982
HpyAV CCTTC 5 cut(s) 59, 217, 418, 633, 878
HpyCH4IV ACGT 1 cut(s) 1086
HpyCH4V TGCA 9 cut(s) 44, 88, 104, 128, 344, 527, 656, 740, 754
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 75, 272, 350, 359, 442, 510
HpyF3I CTNAG 3 cut(s) 267, 276, 410
HpySE526I ACGT 1 cut(s) 1086
Hsp92I GRCGYC 1 cut(s) 244
Hsp92II CATG 5 cut(s) 104, 589, 806, 875, 900
Ksp22I TGATCA 1 cut(s) 612
KspAI GTTAAC 1 cut(s) 982
Kzo9I GATC 2 cut(s) 333, 612
LmnI GCTCC 1 cut(s) 1053
Lsp1109I GCAGC 3 cut(s) 56, 116, 340
LweI GCATC 4 cut(s) 97, 115, 353, 513
MaeI CTAG 3 cut(s) 365, 452, 842
MaeII ACGT 1 cut(s) 1086
MaeIII GTNAC 2 cut(s) 952, 971
MalI GATC 2 cut(s) 335, 614
MboI GATC 2 cut(s) 333, 612
MboII GAAGA 2 cut(s) 202, 339
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 7 cut(s) 79, 184, 498, 575, 644, 732, 965
MlyI GAGTC 3 cut(s) 367, 553, 995
MmeI TCCRAC 1 cut(s) 1037
MseI TTAA 7 cut(s) 59, 158, 497, 789, 810, 855, 981
MslI CAYNNNNRTG 1 cut(s) 722
MspI CCGG 1 cut(s) 704
MspR9I CCNGG 4 cut(s) 309, 381, 705, 714
MvaI CCWGG 3 cut(s) 309, 381, 714
MwoI GCNNNNNNNGC 7 cut(s) 41, 75, 272, 350, 359, 442, 510
NciI CCSGG 1 cut(s) 705
NdeII GATC 2 cut(s) 333, 612
NlaIII CATG 5 cut(s) 104, 589, 806, 875, 900
NlaIV GGNNCC 3 cut(s) 313, 718, 1055
NmuCI GTSAC 2 cut(s) 952, 971
NspI RCATGY 1 cut(s) 104
NspV TTCGAA 1 cut(s) 1107
OliI CACNNNNGTG 1 cut(s) 722
PfeI GAWTC 3 cut(s) 663, 849, 859
PflMI CCANNNNNTGG 1 cut(s) 1047
PfoI TCCNGGA 1 cut(s) 379
PkrI GCNGC 3 cut(s) 71, 106, 355
PleI GAGTC 3 cut(s) 367, 553, 995
PpsI GAGTC 3 cut(s) 367, 553, 995
Psp6I CCWGG 3 cut(s) 307, 379, 712
PspGI CCWGG 3 cut(s) 307, 379, 712
PspN4I GGNNCC 3 cut(s) 313, 718, 1055
PspPI GGNCC 3 cut(s) 192, 312, 911
PstI CTGCAG 1 cut(s) 742
RsaI GTAC 2 cut(s) 681, 765
RsaNI GTAC 2 cut(s) 680, 764
RseI CAYNNNNRTG 1 cut(s) 722
SaqAI TTAA 7 cut(s) 59, 158, 497, 789, 810, 855, 981
SatI GCNGC 3 cut(s) 70, 105, 354
Sau3AI GATC 2 cut(s) 333, 612
Sau96I GGNCC 3 cut(s) 192, 312, 911
ScaI AGTACT 1 cut(s) 765
SchI GAGTC 3 cut(s) 367, 553, 995
ScrFI CCNGG 4 cut(s) 309, 381, 705, 714
SduI GDGCHC 1 cut(s) 364
SfaNI GCATC 4 cut(s) 97, 115, 353, 513
SfcI CTRYAG 1 cut(s) 738
SfuI TTCGAA 1 cut(s) 1107
SinI GGWCC 2 cut(s) 312, 911
SmiI ATTTAAAT 1 cut(s) 811
SmiMI CAYNNNNRTG 1 cut(s) 722
SmlI CTYRAG 2 cut(s) 439, 782
SmoI CTYRAG 2 cut(s) 439, 782
Sse9I AATT 7 cut(s) 79, 184, 498, 575, 644, 732, 965
SsiI CCGC 1 cut(s) 488
SspI AATATT 1 cut(s) 815
SspMI CTAG 3 cut(s) 365, 452, 842
StyD4I CCNGG 4 cut(s) 307, 379, 703, 712
StyI CCWWGG 1 cut(s) 73
SwaI ATTTAAAT 1 cut(s) 811
TaiI ACGT 1 cut(s) 1089
TaqI TCGA 2 cut(s) 999, 1107
TaqII GACCGA 1 cut(s) 971
TasI AATT 7 cut(s) 79, 184, 498, 575, 644, 732, 965
TatI WGTACW 1 cut(s) 763
TfiI GAWTC 3 cut(s) 663, 849, 859
Tru1I TTAA 7 cut(s) 59, 158, 497, 789, 810, 855, 981
Tru9I TTAA 7 cut(s) 59, 158, 497, 789, 810, 855, 981
TseFI GTSAC 2 cut(s) 952, 971
TseI GCWGC 3 cut(s) 69, 104, 353
Tsp45I GTSAC 2 cut(s) 952, 971
TspDTI ATGAA 4 cut(s) 103, 250, 744, 791
Van91I CCANNNNNTGG 1 cut(s) 1047
VpaK11BI GGWCC 2 cut(s) 312, 911
XapI RAATTY 3 cut(s) 184, 575, 644
XceI RCATGY 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 831
XspI CTAG 3 cut(s) 365, 452, 842
ZrmI AGTACT 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.