RLG00000020852

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008308
Physical Location & Seq
Reverse (-)
69450051 .. 69452355
2305 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020852

Sequence Viewer

Length: 1176 bp
ATGGGGCAAGAGGAGCAGAGCACTGTAGGTGTGGAAGAAGAAGAAGAAGAAAGACATGAAATTTCAGAGTCATGGAGCCAAAGGAAGCAAACCCTAATACTCGAAATCTCATCCAAGCTCATCAATGGTGATCTTGAGGCCAAAATTGAAGCCGCCAGAGACATCAGAAACTTGGTCAGGAAGTCTTCTTCTTCTTCCTCCTCCTCTTCTTCTTCTGCGGCCAAGACTCGATTAAAGTTGGGAGCTTCAGGTGTGATTCCACCTTTGGTGACTATGCTGGTCTCTCCTAACCCAGATGCTCGCCAAGCTTCTCTTCTAGCTCTTCTCAACCTCGCTGTTCGCAATGACCGAAACAAAGTCAAGATTGTGACAGCTGGAGCTGTTCCTCCTCTTGTTGAGCTCCTCAAGTTCCAAAATGGTAGCTTAAGGGATTTAGCCACTGCAGCAATCTTAACACTGTCAGCTGCTGCATTGAACAAGCCGATTATTGCGGCTTCTGGAGCTGCACCGCTCCTTGTTCAGATCCTCAGCTCCGGAAGTGTTCAAGGAAAGGTTGATGCCGTGACTGCCCTACACAACCTCTCTACCTGCAAAGACAATGCGACTCCAATTCTTGATGCTACAGCTGTTCCTCCTCTTATAAACCTCCTCAAAGAATGCAAAAAGTATTCCAAGTTTGCTGAAAAAACTTCCGCCCTTCTCGAAATCCTATCCAACTCAGAAGAAGGGCGTGTTGCAATCTCAAATGTAGAGGGTGGGATCTTGACATTAGTAGAGACTATTGAAGATGGATCCCTTGTCAGCACAGAACATGCTGTTGGAGCTTTGCTCACTCTATGTCAGAGCTGTCGAGATAAATACCGGGAACTCATTCTTAAAGAAGGTGCAGTCCCGGGCCTTCTGCGGTTGACTGTAGATGGCACAGCTGAAGCTCGGGAGAAAGCTCGTATACTGCTGGATTTGCTTAGAGATTCTCCCCAGGAAAAGCATTTGGCGTCGTCAGTTCTGGAGAGAATCGTATACGACATTGCCACGAGGGTCGATGGAGCTGATAAAGCTGCTGAAACCGCAAAGAGGTTACTGGAAGACATGGTTAAACGAAGCATGGAGCACAGCATGAGCCGCATCCAGCAGAGAGCTGCGTCTTGTACACCTTCTAATATTCAGTCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

392

Amino Acids

41.88

Weight (kDa)

6.29

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 154 - 309 2.3e-08 ARMC5
ARM_PUB PF25598 187 - 331 6.7e-17 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 641
Acc36I ACCTGC 1 cut(s) 596
AccBSI CCGCTC 1 cut(s) 511
AccI GTMKAC 3 cut(s) 949, 1020, 1169
AccIII TCCGGA 1 cut(s) 533
AciI CCGC 8 cut(s) 153, 218, 491, 509, 693, 904, 1068, 1123
AclWI GGATC 4 cut(s) 517, 767, 786, 799
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 2 cut(s) 231, 948
AcyI GRCGYC 1 cut(s) 995
AfaI GTAC 1 cut(s) 1150
AfiI CCNNNNNNNGG 1 cut(s) 1074
AflII CTTAAG 1 cut(s) 424
AgsI TTSAA 4 cut(s) 149, 475, 545, 785
AjnI CCWGG 1 cut(s) 978
AjuI GAANNNNNNNTTGG 4 cut(s) 297, 329, 801, 833
Alw21I GWGCWC 3 cut(s) 23, 402, 1113
Alw26I GTCTC 3 cut(s) 153, 286, 770
AlwI GGATC 4 cut(s) 517, 767, 786, 799
AlwNI CAGNNNCTG 1 cut(s) 467
Ama87I CYCGRG 2 cut(s) 892, 933
Aor13HI TCCGGA 1 cut(s) 533
AoxI GGCC 3 cut(s) 138, 219, 895
ApeKI GCWGC 6 cut(s) 443, 464, 467, 503, 1058, 1139
ApoI RAATTY 1 cut(s) 60
Asp700I GAANNNNTTC 1 cut(s) 870
AspS9I GGNCC 1 cut(s) 895
AsuC2I CCSGG 3 cut(s) 863, 893, 894
AsuHPI GGTGA 2 cut(s) 140, 280
AvaI CYCGRG 2 cut(s) 892, 933
BamHI GGATCC 1 cut(s) 791
BanII GRGCYC 1 cut(s) 402
BauI CACGAG 1 cut(s) 1033
BbsI GAAGAC 2 cut(s) 177, 1092
Bbv12I GWGCWC 3 cut(s) 23, 402, 1113
BbvCI CCTCAGC 1 cut(s) 527
BbvI GCAGC 6 cut(s) 451, 454, 455, 490, 1045, 1126
BccI CCATC 3 cut(s) 782, 911, 1037
BceAI ACGGC 1 cut(s) 545
BciT130I CCWGG 1 cut(s) 980
BcnI CCSGG 3 cut(s) 863, 893, 894
BcoDI GTCTC 3 cut(s) 153, 286, 770
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 4 cut(s) 24, 441, 621, 912
BfrI CTTAAG 1 cut(s) 424
BfuAI ACCTGC 1 cut(s) 596
Bme1390I CCNGG 4 cut(s) 863, 893, 894, 980
BmeT110I CYCGRG 2 cut(s) 892, 933
BmgT120I GGNCC 1 cut(s) 895
BmiI GGNNCC 2 cut(s) 77, 793
BmrFI CCNGG 4 cut(s) 863, 893, 894, 980
BmsI GCATC 4 cut(s) 286, 547, 607, 1134
BpiI GAAGAC 2 cut(s) 177, 1092
BplI GAGNNNNNCTC 2 cut(s) 813, 845
BpmI CTGGAG 3 cut(s) 396, 519, 1028
Bpu10I CCTNAGC 1 cut(s) 527
BpuEI CTTGAG 2 cut(s) 155, 389
BpuMI CCSGG 3 cut(s) 863, 893, 894
BsaHI GRCGYC 1 cut(s) 995
BsaI GGTCTC 1 cut(s) 286
BsaJI CCNNGG 2 cut(s) 892, 978
BsaWI WCCGGW 1 cut(s) 533
Bsc4I CCNNNNNNNGG 1 cut(s) 1074
Bse1I ACTGG 1 cut(s) 1086
Bse3DI GCAATG 2 cut(s) 349, 1026
BseAI TCCGGA 1 cut(s) 533
BseBI CCWGG 1 cut(s) 980
BseDI CCNNGG 2 cut(s) 892, 978
BseGI GGATG 2 cut(s) 110, 1125
BseLI CCNNNNNNNGG 1 cut(s) 1074
BseMI GCAATG 2 cut(s) 349, 1026
BseMII CTCAG 2 cut(s) 541, 732
BseNI ACTGG 1 cut(s) 1086
BseRI GAGGAG 7 cut(s) 26, 190, 193, 378, 392, 624, 638
BseXI GCAGC 6 cut(s) 451, 454, 455, 490, 1045, 1126
BsgI GTGCAG 2 cut(s) 489, 906
BshFI GGCC 3 cut(s) 140, 221, 897
BsiHKAI GWGCWC 3 cut(s) 23, 402, 1113
BsiHKCI CYCGRG 2 cut(s) 892, 933
BsiSI CCGG 3 cut(s) 534, 862, 893
BslFI GGGAC 1 cut(s) 875
BslI CCNNNNNNNGG 1 cut(s) 1074
BsmAI GTCTC 3 cut(s) 153, 286, 770
BsmFI GGGAC 1 cut(s) 875
BsmI GAATGC 1 cut(s) 662
BsnI GGCC 3 cut(s) 140, 221, 897
Bso31I GGTCTC 1 cut(s) 286
BsoBI CYCGRG 2 cut(s) 892, 933
Bsp1286I GDGCHC 3 cut(s) 23, 402, 1113
Bsp13I TCCGGA 1 cut(s) 533
Bsp1407I TGTACA 1 cut(s) 1148
Bsp143I GATC 4 cut(s) 130, 522, 759, 791
BspACI CCGC 8 cut(s) 153, 218, 491, 509, 693, 904, 1068, 1123
BspANI GGCC 3 cut(s) 140, 221, 897
BspCNI CTCAG 2 cut(s) 540, 731
BspEI TCCGGA 1 cut(s) 533
BspLI GGNNCC 2 cut(s) 77, 793
BspMAI CTGCAG 1 cut(s) 445
BspMI ACCTGC 1 cut(s) 596
BspPI GGATC 4 cut(s) 517, 767, 786, 799
BspQI GCTCTTC 1 cut(s) 327
BspTI CTTAAG 1 cut(s) 424
BspTNI GGTCTC 1 cut(s) 286
BsrBI CCGCTC 1 cut(s) 511
BsrDI GCAATG 2 cut(s) 349, 1026
BsrGI TGTACA 1 cut(s) 1148
BsrI ACTGG 1 cut(s) 1086
BssECI CCNNGG 2 cut(s) 892, 978
BssMI GATC 4 cut(s) 130, 522, 759, 791
BssNAI GTATAC 2 cut(s) 950, 1021
BssNI GRCGYC 1 cut(s) 995
BssSI CACGAG 1 cut(s) 1033
Bst1107I GTATAC 2 cut(s) 950, 1021
Bst2BI CACGAG 1 cut(s) 1033
Bst2UI CCWGG 1 cut(s) 980
Bst4CI ACNGT 3 cut(s) 25, 459, 913
Bst6I CTCTTC 3 cut(s) 211, 318, 327
BstACI GRCGYC 1 cut(s) 995
BstAFI CTTAAG 1 cut(s) 424
BstAUI TGTACA 1 cut(s) 1148
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 3 cut(s) 527, 718, 965
BstF5I GGATG 2 cut(s) 110, 1125
BstKTI GATC 4 cut(s) 133, 525, 762, 794
BstMAI GTCTC 3 cut(s) 153, 286, 770
BstMBI GATC 4 cut(s) 130, 522, 759, 791
BstNI CCWGG 1 cut(s) 980
BstNSI RCATGY 1 cut(s) 815
BstSCI CCNGG 4 cut(s) 861, 891, 892, 978
BstSFI CTRYAG 4 cut(s) 24, 441, 621, 912
BstV1I GCAGC 6 cut(s) 451, 454, 455, 490, 1045, 1126
BstV2I GAAGAC 2 cut(s) 177, 1092
BstX2I RGATCY 3 cut(s) 522, 759, 791
BstYI RGATCY 3 cut(s) 522, 759, 791
BstZ17I GTATAC 2 cut(s) 950, 1021
BsuRI GGCC 3 cut(s) 140, 221, 897
BtsCI GGATG 2 cut(s) 110, 1125
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 3 cut(s) 21, 438, 455
BveI ACCTGC 1 cut(s) 596
Cac8I GCNNGC 1 cut(s) 301
CaiI CAGNNNCTG 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 895
Cfr9I CCCGGG 1 cut(s) 892
CseI GACGC 2 cut(s) 984, 1131
Csp6I GTAC 1 cut(s) 1149
CviAII CATG 7 cut(s) 56, 72, 812, 1090, 1105, 1117, 1173
CviQI GTAC 1 cut(s) 1149
DdeI CTNAG 3 cut(s) 527, 718, 965
DpnI GATC 4 cut(s) 132, 524, 761, 793
DpnII GATC 4 cut(s) 130, 522, 759, 791
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 3 cut(s) 211, 318, 327
EarI CTCTTC 3 cut(s) 211, 318, 327
EciI GGCGGA 1 cut(s) 682
Ecl136II GAGCTC 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 400
Eco57I CTGAAG 2 cut(s) 231, 948
Eco88I CYCGRG 2 cut(s) 892, 933
EcoICRI GAGCTC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 978
EcoT38I GRGCYC 1 cut(s) 402
FaeI CATG 7 cut(s) 59, 75, 815, 1093, 1108, 1120, 1176
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FaqI GGGAC 1 cut(s) 875
FatI CATG 7 cut(s) 55, 71, 811, 1089, 1104, 1116, 1172
FblI GTMKAC 3 cut(s) 949, 1020, 1169
FokI GGATG 2 cut(s) 97, 1112
FriOI GRGCYC 1 cut(s) 402
FspBI CTAG 1 cut(s) 317
GsuI CTGGAG 3 cut(s) 396, 519, 1028
HaeIII GGCC 3 cut(s) 140, 221, 897
HapII CCGG 3 cut(s) 534, 862, 893
HgaI GACGC 2 cut(s) 984, 1131
Hin1I GRCGYC 1 cut(s) 995
Hin1II CATG 7 cut(s) 59, 75, 815, 1093, 1108, 1120, 1176
HincII GTYRAC 1 cut(s) 909
HindII GTYRAC 1 cut(s) 909
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 6 cut(s) 68, 226, 256, 604, 971, 1014
HpaII CCGG 3 cut(s) 534, 862, 893
HphI GGTGA 2 cut(s) 140, 280
Hpy166II GTNNAC 5 cut(s) 909, 950, 1021, 1151, 1170
Hpy188I TCNGA 5 cut(s) 67, 167, 522, 721, 843
Hpy8I GTNNAC 5 cut(s) 909, 950, 1021, 1151, 1170
Hpy99I CGWCG 1 cut(s) 1000
HpyAV CCTTC 5 cut(s) 707, 719, 875, 908, 1164
HpyCH4III ACNGT 3 cut(s) 25, 459, 913
HpyCH4V TGCA 7 cut(s) 443, 470, 506, 591, 660, 737, 887
HpyF3I CTNAG 3 cut(s) 527, 718, 965
Hsp92I GRCGYC 1 cut(s) 995
Hsp92II CATG 7 cut(s) 59, 75, 815, 1093, 1108, 1120, 1176
Kpn2I TCCGGA 1 cut(s) 533
Kzo9I GATC 4 cut(s) 130, 522, 759, 791
LguI GCTCTTC 1 cut(s) 327
Lsp1109I GCAGC 6 cut(s) 451, 454, 455, 490, 1045, 1126
LweI GCATC 4 cut(s) 286, 547, 607, 1134
MaeI CTAG 1 cut(s) 317
MaeIII GTNAC 4 cut(s) 268, 367, 562, 1077
MalI GATC 4 cut(s) 132, 524, 761, 793
MbiI CCGCTC 1 cut(s) 511
MboI GATC 4 cut(s) 130, 522, 759, 791
MflI RGATCY 3 cut(s) 522, 759, 791
MhlI GDGCHC 3 cut(s) 23, 402, 1113
MluCI AATT 3 cut(s) 60, 144, 609
MlyI GAGTC 3 cut(s) 77, 220, 598
MmeI TCCRAC 2 cut(s) 738, 799
MroI TCCGGA 1 cut(s) 533
MroXI GAANNNNTTC 1 cut(s) 870
MseI TTAA 5 cut(s) 233, 425, 452, 876, 1095
MspA1I CMGCKG 4 cut(s) 374, 464, 626, 926
MspCI CTTAAG 1 cut(s) 424
MspI CCGG 3 cut(s) 534, 862, 893
MspR9I CCNGG 4 cut(s) 863, 893, 894, 980
Mva1269I GAATGC 1 cut(s) 662
MvaI CCWGG 1 cut(s) 980
NciI CCSGG 3 cut(s) 863, 893, 894
NdeII GATC 4 cut(s) 130, 522, 759, 791
NlaIII CATG 7 cut(s) 59, 75, 815, 1093, 1108, 1120, 1176
NlaIV GGNNCC 2 cut(s) 77, 793
NmuCI GTSAC 3 cut(s) 268, 367, 562
NspI RCATGY 1 cut(s) 815
PciSI GCTCTTC 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 346
PctI GAATGC 1 cut(s) 662
PdmI GAANNNNTTC 1 cut(s) 870
PfeI GAWTC 3 cut(s) 256, 971, 1014
PleI GAGTC 3 cut(s) 76, 220, 598
PpsI GAGTC 3 cut(s) 76, 220, 598
PsiI TTATAA 1 cut(s) 641
Psp124BI GAGCTC 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 978
PspGI CCWGG 1 cut(s) 978
PspN4I GGNNCC 2 cut(s) 77, 793
PspPI GGNCC 1 cut(s) 895
PstI CTGCAG 1 cut(s) 445
PstNI CAGNNNCTG 1 cut(s) 467
PsuI RGATCY 3 cut(s) 522, 759, 791
PvuII CAGCTG 4 cut(s) 374, 464, 626, 926
RsaI GTAC 1 cut(s) 1150
RsaNI GTAC 1 cut(s) 1149
SacI GAGCTC 1 cut(s) 402
SapI GCTCTTC 1 cut(s) 327
SaqAI TTAA 5 cut(s) 233, 425, 452, 876, 1095
Sau3AI GATC 4 cut(s) 130, 522, 759, 791
Sau96I GGNCC 1 cut(s) 895
SchI GAGTC 3 cut(s) 77, 220, 598
ScrFI CCNGG 4 cut(s) 863, 893, 894, 980
SduI GDGCHC 3 cut(s) 23, 402, 1113
SfaNI GCATC 4 cut(s) 286, 547, 607, 1134
SfcI CTRYAG 4 cut(s) 24, 441, 621, 912
SmaI CCCGGG 1 cut(s) 894
SmlI CTYRAG 3 cut(s) 134, 404, 424
SmoI CTYRAG 3 cut(s) 134, 404, 424
Sse9I AATT 3 cut(s) 60, 144, 609
SsiI CCGC 8 cut(s) 153, 218, 491, 509, 693, 904, 1068, 1123
SspI AATATT 1 cut(s) 1162
SspMI CTAG 1 cut(s) 317
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 4 cut(s) 861, 891, 892, 978
TaaI ACNGT 3 cut(s) 25, 459, 913
TaqI TCGA 5 cut(s) 102, 229, 702, 850, 1041
TaqII GACCGA 1 cut(s) 363
TasI AATT 3 cut(s) 60, 144, 609
TatI WGTACW 1 cut(s) 1148
TauI GCSGC 4 cut(s) 155, 221, 494, 1125
TfiI GAWTC 3 cut(s) 256, 971, 1014
Tru1I TTAA 5 cut(s) 233, 425, 452, 876, 1095
Tru9I TTAA 5 cut(s) 233, 425, 452, 876, 1095
TscAI CASTG 3 cut(s) 28, 445, 462
TseFI GTSAC 3 cut(s) 268, 367, 562
TseI GCWGC 6 cut(s) 443, 464, 467, 503, 1058, 1139
Tsp45I GTSAC 3 cut(s) 268, 367, 562
TspDTI ATGAA 1 cut(s) 72
TspMI CCCGGG 1 cut(s) 892
TspRI CASTG 3 cut(s) 28, 445, 462
Vha464I CTTAAG 1 cut(s) 424
XapI RAATTY 1 cut(s) 60
XceI RCATGY 1 cut(s) 815
XmaI CCCGGG 1 cut(s) 892
XmiI GTMKAC 3 cut(s) 949, 1020, 1169
XmnI GAANNNNTTC 1 cut(s) 870
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.