Rh2DG534800

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008308
Physical Location & Seq
Reverse (-)
76499680 .. 76502044
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG534800.1

Sequence Viewer

Length: 1179 bp
ATGGGGCAAGAGGAGCAGAGCACTGTAGGTGTGGAAGAAGAAGAAGAAGAAGAAAGACATGAAATTTCAGAGTCATGGAGCCAAAGGAAGCAAACCCTAATACTCGAAATCTCATCCAAGCTCATCAATGGTGATCTTGAGGCCAAAATTGGAGCCGCCAGAGACATCAGAAACTTGGTCAGGAAGTCTTCTTCTTCCTCCTCCTCCTCTTCTTCTTCTGCGGCCAAGACTCGATTAAAGTTGGGAGCTTCAGGTGTGATTCCACCTTTGGTGACTATGCTGGTCTCTCCTAACCCAGATGCTCGCCAGGCTTCTCTTCTAGCTCTTCTCAACCTCGCTGTTCGCAATGACCGAAACAAAGTCAAGATTGTGACAGCTGGAGCTGTTCCTCCTCTTGTTGAGCTCCTCAAGTTCCAAAATGGTAGCTTAAGGGATTTAGCCACTGCAGCAATCTTAACACTGTCAGCTGTTGCATTGAACAAGCCAATTATTGCGGCTTCTGGAGCTGCACCGCTCCTTGTTCAGATCCTCAGCTCCGGAAGTGTTCAAGGAAAGGTTGATGCCGTGACTGCCCTACACAACCTCTCTTCCTGCAAAGACAATGCGACTCCAATTCTTGATGCTACAGCTGTTCCTCCTCTTATAAACCTCCTCAAAGAATGCAAAAAGTATTCCAAGTTTGCTGAAAAAACTTCTGCCCTTCTCGAAATCCTATCCAACTCAGAAGAAGGGCGCGTTGCAATCTCAAACTTAGAGGGTGGGATCTTAACCTTAGTAGAGACTGTTGAAGATGGATCCATTGTCAGCACAGAACATGCTGTTGGAGCTTTGCTCACTCTATGTGAGAGCTGTCGAGATAAATACCGGGAACTCATTCTTAAAGAAGGTGCAGTCCCGGGCCTTCTGCGGTTGACTGTAGATGGCACAGCTGAAGCTCGGGAGAAAGCTCGTATACTTCTGGATTTGCTGAGAGATTCTCCCCAGGAAAAGCATTTGGCGTCGTCAGTTCTGGAGAGAATCGTATACGACATTGCCACGAGGGTCGATGGAGCTGATAAAGCTGCTGAAACCGCAAAGAGGTTACTGGAAGATATGGTTAAACGAAGCATGGAGCACAGCATGAGTCGCATTCAGCAGAGAGCCGCGTCTTGTACACCTTCTAATATTCAGTCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

392

Amino Acids

41.95

Weight (kDa)

6.08

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 174 - 332 4.2e-16 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 191 - 326 1.4e-06 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 644
AccBSI CCGCTC 1 cut(s) 514
AccI GTMKAC 3 cut(s) 952, 1023, 1172
AccII CGCG 2 cut(s) 735, 1145
AccIII TCCGGA 1 cut(s) 536
AciI CCGC 7 cut(s) 156, 221, 494, 512, 907, 1071, 1143
AclWI GGATC 4 cut(s) 520, 770, 789, 802
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 1 cut(s) 63
AcuI CTGAAG 2 cut(s) 234, 951
AcyI GRCGYC 1 cut(s) 998
AfaI GTAC 1 cut(s) 1153
AfiI CCNNNNNNNGG 1 cut(s) 1077
AflII CTTAAG 1 cut(s) 427
AgsI TTSAA 3 cut(s) 478, 548, 788
AjnI CCWGG 2 cut(s) 306, 981
AjuI GAANNNNNNNTTGG 2 cut(s) 804, 836
Alw21I GWGCWC 3 cut(s) 23, 405, 1116
Alw26I GTCTC 3 cut(s) 156, 289, 773
AlwI GGATC 4 cut(s) 520, 770, 789, 802
Ama87I CYCGRG 2 cut(s) 895, 936
Aor13HI TCCGGA 1 cut(s) 536
AoxI GGCC 3 cut(s) 141, 222, 898
ApeKI GCWGC 3 cut(s) 446, 506, 1061
ApoI RAATTY 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 873
AspLEI GCGC 1 cut(s) 735
AspS9I GGNCC 1 cut(s) 898
AsuC2I CCSGG 3 cut(s) 866, 896, 897
AsuHPI GGTGA 2 cut(s) 143, 283
AvaI CYCGRG 2 cut(s) 895, 936
BamHI GGATCC 1 cut(s) 794
BanII GRGCYC 1 cut(s) 405
BauI CACGAG 1 cut(s) 1036
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 3 cut(s) 23, 405, 1116
BbvCI CCTCAGC 1 cut(s) 530
BbvI GCAGC 3 cut(s) 458, 493, 1048
BccI CCATC 3 cut(s) 785, 914, 1040
BceAI ACGGC 1 cut(s) 548
BciT130I CCWGG 2 cut(s) 308, 983
BcnI CCSGG 3 cut(s) 866, 896, 897
BcoDI GTCTC 3 cut(s) 156, 289, 773
BfaI CTAG 1 cut(s) 320
BfmI CTRYAG 4 cut(s) 24, 444, 624, 915
BfrI CTTAAG 1 cut(s) 427
BisI GCNGC 7 cut(s) 156, 222, 447, 495, 507, 1062, 1143
BlsI GCNGC 7 cut(s) 157, 223, 448, 496, 508, 1063, 1144
Bme1390I CCNGG 5 cut(s) 308, 866, 896, 897, 983
BmeT110I CYCGRG 2 cut(s) 895, 936
BmgT120I GGNCC 1 cut(s) 898
BmiI GGNNCC 3 cut(s) 80, 154, 796
BmrFI CCNGG 5 cut(s) 308, 866, 896, 897, 983
BmsI GCATC 3 cut(s) 289, 550, 610
BpiI GAAGAC 1 cut(s) 180
BplI GAGNNNNNCTC 4 cut(s) 816, 848, 961, 993
BpmI CTGGAG 3 cut(s) 399, 522, 1031
Bpu10I CCTNAGC 1 cut(s) 530
BpuEI CTTGAG 2 cut(s) 158, 392
BpuMI CCSGG 3 cut(s) 866, 896, 897
BsaHI GRCGYC 1 cut(s) 998
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 2 cut(s) 895, 981
BsaWI WCCGGW 1 cut(s) 536
Bsc4I CCNNNNNNNGG 1 cut(s) 1077
Bse1I ACTGG 1 cut(s) 1089
Bse3DI GCAATG 2 cut(s) 352, 1029
BseAI TCCGGA 1 cut(s) 536
BseBI CCWGG 2 cut(s) 308, 983
BseDI CCNNGG 2 cut(s) 895, 981
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 1077
BseMI GCAATG 2 cut(s) 352, 1029
BseMII CTCAG 3 cut(s) 544, 735, 959
BseNI ACTGG 1 cut(s) 1089
BseRI GAGGAG 8 cut(s) 26, 190, 193, 196, 381, 395, 627, 641
BseXI GCAGC 3 cut(s) 458, 493, 1048
BsgI GTGCAG 2 cut(s) 492, 909
Bsh1236I CGCG 2 cut(s) 735, 1145
BshFI GGCC 3 cut(s) 143, 224, 900
BsiHKAI GWGCWC 3 cut(s) 23, 405, 1116
BsiHKCI CYCGRG 2 cut(s) 895, 936
BsiSI CCGG 3 cut(s) 537, 865, 896
BslFI GGGAC 1 cut(s) 878
BslI CCNNNNNNNGG 1 cut(s) 1077
BsmAI GTCTC 3 cut(s) 156, 289, 773
BsmFI GGGAC 1 cut(s) 878
BsmI GAATGC 2 cut(s) 665, 1128
BsnI GGCC 3 cut(s) 143, 224, 900
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 2 cut(s) 895, 936
Bsp1286I GDGCHC 3 cut(s) 23, 405, 1116
Bsp13I TCCGGA 1 cut(s) 536
Bsp1407I TGTACA 1 cut(s) 1151
Bsp143I GATC 4 cut(s) 133, 525, 762, 794
BspACI CCGC 7 cut(s) 156, 221, 494, 512, 907, 1071, 1143
BspANI GGCC 3 cut(s) 143, 224, 900
BspCNI CTCAG 3 cut(s) 543, 734, 960
BspEI TCCGGA 1 cut(s) 536
BspFNI CGCG 2 cut(s) 735, 1145
BspLI GGNNCC 3 cut(s) 80, 154, 796
BspMAI CTGCAG 1 cut(s) 448
BspPI GGATC 4 cut(s) 520, 770, 789, 802
BspQI GCTCTTC 1 cut(s) 330
BspTI CTTAAG 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 289
BsrBI CCGCTC 1 cut(s) 514
BsrDI GCAATG 2 cut(s) 352, 1029
BsrGI TGTACA 1 cut(s) 1151
BsrI ACTGG 1 cut(s) 1089
BssECI CCNNGG 2 cut(s) 895, 981
BssMI GATC 4 cut(s) 133, 525, 762, 794
BssNAI GTATAC 2 cut(s) 953, 1024
BssNI GRCGYC 1 cut(s) 998
BssSI CACGAG 1 cut(s) 1036
Bst1107I GTATAC 2 cut(s) 953, 1024
Bst2BI CACGAG 1 cut(s) 1036
Bst2UI CCWGG 2 cut(s) 308, 983
Bst4CI ACNGT 4 cut(s) 25, 462, 784, 916
Bst6I CTCTTC 4 cut(s) 214, 321, 330, 592
BstACI GRCGYC 1 cut(s) 998
BstAFI CTTAAG 1 cut(s) 427
BstAUI TGTACA 1 cut(s) 1151
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 5 cut(s) 530, 721, 751, 772, 968
BstF5I GGATG 1 cut(s) 113
BstFNI CGCG 2 cut(s) 735, 1145
BstHHI GCGC 1 cut(s) 735
BstKTI GATC 4 cut(s) 136, 528, 765, 797
BstMAI GTCTC 3 cut(s) 156, 289, 773
BstMBI GATC 4 cut(s) 133, 525, 762, 794
BstMWI GCNNNNNNNGC 9 cut(s) 13, 308, 446, 503, 569, 824, 1058, 1070, 1125
BstNI CCWGG 2 cut(s) 308, 983
BstNSI RCATGY 1 cut(s) 818
BstSCI CCNGG 5 cut(s) 306, 864, 894, 895, 981
BstSFI CTRYAG 4 cut(s) 24, 444, 624, 915
BstUI CGCG 2 cut(s) 735, 1145
BstV1I GCAGC 3 cut(s) 458, 493, 1048
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 3 cut(s) 525, 762, 794
BstYI RGATCY 3 cut(s) 525, 762, 794
BstZ17I GTATAC 2 cut(s) 953, 1024
BsuRI GGCC 3 cut(s) 143, 224, 900
BtsCI GGATG 1 cut(s) 113
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 3 cut(s) 21, 441, 458
Cac8I GCNNGC 1 cut(s) 304
CfoI GCGC 1 cut(s) 735
Cfr13I GGNCC 1 cut(s) 898
Cfr9I CCCGGG 1 cut(s) 895
CseI GACGC 2 cut(s) 987, 1134
Csp6I GTAC 1 cut(s) 1152
CviAII CATG 6 cut(s) 59, 75, 815, 1108, 1120, 1176
CviQI GTAC 1 cut(s) 1152
DdeI CTNAG 5 cut(s) 530, 721, 751, 772, 968
DpnI GATC 4 cut(s) 135, 527, 764, 796
DpnII GATC 4 cut(s) 133, 525, 762, 794
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 4 cut(s) 214, 321, 330, 592
EarI CTCTTC 4 cut(s) 214, 321, 330, 592
Ecl136II GAGCTC 1 cut(s) 403
Eco24I GRGCYC 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 2 cut(s) 234, 951
Eco88I CYCGRG 2 cut(s) 895, 936
EcoICRI GAGCTC 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 306, 981
EcoT38I GRGCYC 1 cut(s) 405
FaeI CATG 6 cut(s) 62, 78, 818, 1111, 1123, 1179
FaqI GGGAC 1 cut(s) 878
FatI CATG 6 cut(s) 58, 74, 814, 1107, 1119, 1175
FblI GTMKAC 3 cut(s) 952, 1023, 1172
Fnu4HI GCNGC 7 cut(s) 156, 222, 447, 495, 507, 1062, 1143
FokI GGATG 1 cut(s) 100
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 7 cut(s) 156, 222, 447, 495, 507, 1062, 1143
FspBI CTAG 1 cut(s) 320
GlaI GCGC 1 cut(s) 734
GluI GCNGC 7 cut(s) 156, 222, 447, 495, 507, 1062, 1143
GsuI CTGGAG 3 cut(s) 399, 522, 1031
HaeIII GGCC 3 cut(s) 143, 224, 900
HapII CCGG 3 cut(s) 537, 865, 896
HgaI GACGC 2 cut(s) 987, 1134
HhaI GCGC 1 cut(s) 735
Hin1I GRCGYC 1 cut(s) 998
Hin1II CATG 6 cut(s) 62, 78, 818, 1111, 1123, 1179
Hin6I GCGC 1 cut(s) 733
HinP1I GCGC 1 cut(s) 733
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HinfI GANTC 7 cut(s) 71, 229, 259, 607, 974, 1017, 1123
HpaII CCGG 3 cut(s) 537, 865, 896
HphI GGTGA 2 cut(s) 143, 283
Hpy166II GTNNAC 5 cut(s) 912, 953, 1024, 1154, 1173
Hpy188I TCNGA 4 cut(s) 70, 170, 525, 724
Hpy8I GTNNAC 5 cut(s) 912, 953, 1024, 1154, 1173
Hpy99I CGWCG 1 cut(s) 1003
HpyAV CCTTC 5 cut(s) 710, 722, 878, 911, 1167
HpyCH4III ACNGT 4 cut(s) 25, 462, 784, 916
HpyCH4V TGCA 7 cut(s) 446, 473, 509, 594, 663, 740, 890
HpyF10VI GCNNNNNNNGC 9 cut(s) 13, 308, 446, 503, 569, 824, 1058, 1070, 1125
HpyF3I CTNAG 5 cut(s) 530, 721, 751, 772, 968
Hsp92I GRCGYC 1 cut(s) 998
Hsp92II CATG 6 cut(s) 62, 78, 818, 1111, 1123, 1179
HspAI GCGC 1 cut(s) 733
Kpn2I TCCGGA 1 cut(s) 536
Kzo9I GATC 4 cut(s) 133, 525, 762, 794
LguI GCTCTTC 1 cut(s) 330
Lsp1109I GCAGC 3 cut(s) 458, 493, 1048
LweI GCATC 3 cut(s) 289, 550, 610
MaeI CTAG 1 cut(s) 320
MaeIII GTNAC 4 cut(s) 271, 370, 565, 1080
MalI GATC 4 cut(s) 135, 527, 764, 796
MbiI CCGCTC 1 cut(s) 514
MboI GATC 4 cut(s) 133, 525, 762, 794
MflI RGATCY 3 cut(s) 525, 762, 794
MhlI GDGCHC 3 cut(s) 23, 405, 1116
MluCI AATT 4 cut(s) 63, 147, 486, 612
MlyI GAGTC 4 cut(s) 80, 223, 601, 1132
MmeI TCCRAC 2 cut(s) 741, 802
MroI TCCGGA 1 cut(s) 536
MroXI GAANNNNTTC 1 cut(s) 873
MseI TTAA 6 cut(s) 236, 428, 455, 767, 879, 1098
MspA1I CMGCKG 4 cut(s) 377, 467, 629, 929
MspCI CTTAAG 1 cut(s) 427
MspI CCGG 3 cut(s) 537, 865, 896
MspR9I CCNGG 5 cut(s) 308, 866, 896, 897, 983
Mva1269I GAATGC 2 cut(s) 665, 1128
MvaI CCWGG 2 cut(s) 308, 983
MvnI CGCG 2 cut(s) 735, 1145
MwoI GCNNNNNNNGC 9 cut(s) 13, 308, 446, 503, 569, 824, 1058, 1070, 1125
NciI CCSGG 3 cut(s) 866, 896, 897
NdeII GATC 4 cut(s) 133, 525, 762, 794
NlaIII CATG 6 cut(s) 62, 78, 818, 1111, 1123, 1179
NlaIV GGNNCC 3 cut(s) 80, 154, 796
NmuCI GTSAC 3 cut(s) 271, 370, 565
NspI RCATGY 1 cut(s) 818
PciSI GCTCTTC 1 cut(s) 330
PcsI WCGNNNNNNNCGW 1 cut(s) 349
PctI GAATGC 2 cut(s) 665, 1128
PdmI GAANNNNTTC 1 cut(s) 873
PfeI GAWTC 3 cut(s) 259, 974, 1017
PkrI GCNGC 7 cut(s) 157, 223, 448, 496, 508, 1063, 1144
PleI GAGTC 4 cut(s) 79, 223, 601, 1131
PpsI GAGTC 4 cut(s) 79, 223, 601, 1131
PsiI TTATAA 1 cut(s) 644
Psp124BI GAGCTC 1 cut(s) 405
Psp6I CCWGG 2 cut(s) 306, 981
PspGI CCWGG 2 cut(s) 306, 981
PspN4I GGNNCC 3 cut(s) 80, 154, 796
PspPI GGNCC 1 cut(s) 898
PstI CTGCAG 1 cut(s) 448
PsuI RGATCY 3 cut(s) 525, 762, 794
PvuII CAGCTG 4 cut(s) 377, 467, 629, 929
RsaI GTAC 1 cut(s) 1153
RsaNI GTAC 1 cut(s) 1152
SacI GAGCTC 1 cut(s) 405
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 6 cut(s) 236, 428, 455, 767, 879, 1098
SatI GCNGC 7 cut(s) 156, 222, 447, 495, 507, 1062, 1143
Sau3AI GATC 4 cut(s) 133, 525, 762, 794
Sau96I GGNCC 1 cut(s) 898
SchI GAGTC 4 cut(s) 80, 223, 601, 1132
ScrFI CCNGG 5 cut(s) 308, 866, 896, 897, 983
SduI GDGCHC 3 cut(s) 23, 405, 1116
SfaNI GCATC 3 cut(s) 289, 550, 610
SfcI CTRYAG 4 cut(s) 24, 444, 624, 915
SmaI CCCGGG 1 cut(s) 897
SmlI CTYRAG 3 cut(s) 137, 407, 427
SmoI CTYRAG 3 cut(s) 137, 407, 427
Sse9I AATT 4 cut(s) 63, 147, 486, 612
SsiI CCGC 7 cut(s) 156, 221, 494, 512, 907, 1071, 1143
SspI AATATT 1 cut(s) 1165
SspMI CTAG 1 cut(s) 320
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 5 cut(s) 306, 864, 894, 895, 981
TaaI ACNGT 4 cut(s) 25, 462, 784, 916
TaqI TCGA 5 cut(s) 105, 232, 705, 853, 1044
TaqII GACCGA 1 cut(s) 366
TasI AATT 4 cut(s) 63, 147, 486, 612
TatI WGTACW 1 cut(s) 1151
TauI GCSGC 4 cut(s) 158, 224, 497, 1145
TfiI GAWTC 3 cut(s) 259, 974, 1017
Tru1I TTAA 6 cut(s) 236, 428, 455, 767, 879, 1098
Tru9I TTAA 6 cut(s) 236, 428, 455, 767, 879, 1098
TscAI CASTG 3 cut(s) 28, 448, 465
TseFI GTSAC 3 cut(s) 271, 370, 565
TseI GCWGC 3 cut(s) 446, 506, 1061
Tsp45I GTSAC 3 cut(s) 271, 370, 565
TspDTI ATGAA 1 cut(s) 75
TspMI CCCGGG 1 cut(s) 895
TspRI CASTG 3 cut(s) 28, 448, 465
Vha464I CTTAAG 1 cut(s) 427
XapI RAATTY 1 cut(s) 63
XceI RCATGY 1 cut(s) 818
XmaI CCCGGG 1 cut(s) 895
XmiI GTMKAC 3 cut(s) 952, 1023, 1172
XmnI GAANNNNTTC 1 cut(s) 873
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.