Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008308

Physical Location & Seq

Genomic Coordinates Forward (+)

8936686 .. 8937522

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1105200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCTAATTAGGAATAAGGTCAAGATTGTGATGGCCGGAGCCGTTCCCCCACTTGTTGAGCTCCTCAAATTCCAAAATGGTAGTTTAAGGGATTTAGCAACTGCAGCAATCTTAACACTCTCAGCTGCTGCTCTGAACAAGCCAATCATTGCAGATTCTGGAGCGGCGCCTCTCCTGGTTGAGATCCTCAGCTCCGGAAGTGTTCAAGGAAAAGTTGATGCTGTGACTGCCTTACACAATCTCTCCACCTGCAAAGAGAACTCAACTACTATTCTGGATGCTACAGCCGTTCGTCCTCTTATCAACCTCCTCAAGGAATGCAAAAAGTACTCCAAGTTTGCTGAAAAAACTACTGCCCTTCTCGAGATCCTCTCCAATTTCGAAGAAGGACGTACTGCAATCTCAAACACAGAAGGCGGGATATTAACCTTAGTAGAGACTGTTGAAGATGGATCCCTAATCAGCACACAACATGCGGTTGGAGCATTGCTCTCCATGTGTCAGAGCTGCCGCGACAAATACAGGGAACTCATTCTTAACGAAGGTGCAGTCCCAGGTCTTCTTCGACTGACAGTAGATGGCACAGCTGAAGCCCGGGAGAGAGCTCATACGCTACTAGACTTGCTTAGAGATTCTCCCCAGCAAAAGCAACTGGCATCCTCCGTTTTAGAGAGAATTGTATACGACATTGCCACAAGGGTAGATGGAGCGGACAAAGCAGCTGAAACCGCAAAGAGGTTATTGGAAGACATGGTTAAAAGAAGCATGGAGCATAGCATGAACCGAATCGAGCAGAGAGCTGCATCTTGTACACCTTCGAATACGCAGTCTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

279

Amino Acids

29.92

Weight (kDa)

6.46

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	9 - 198	1.4e-10	ARMC5
ARM_PUB	PF25598	15 - 220	2.4e-18	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	77 - 212	7.7e-07	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12710
fragaria_vesca	FvH4_6g40430 FvH4_6g40430 FvH4_6g40430 FvH4_6g40430 FvH4_6g40430
malus_domestica	MD09G1130000.v1.1 MD17G1105200.v1.1
prunus_persica	Prupe.3G195100_v2.0.a1 Prupe.3G195100_v2.0.a1 Prupe.3G195100_v2.0.a1
pyrus_communis	pycom09g05310 pycom17g10920
rosa_chinensis	RchiOBHm_Chr2g0155661
rosa_laevigata	RLG00000020852
rosa_multiflora	Rmu_ssc0000430.1_g000004
rosa_roxburghii	Rroxscaffold_2G00093580
rosa_rugosa	Rorug02G0448900
rosa_samantha	Rh2AG515000 Rh2BG525900 Rh2CG499900 Rh2DG534800
rosa_wichuraiana	Rw2G042320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	166
AccBSI	CCGCTC	2 cut(s)	164, 710
AccI	GTMKAC	2 cut(s)	681, 830
AccII	CGCG	1 cut(s)	513
AccIII	TCCGGA	1 cut(s)	194
AciI	CCGC	6 cut(s)	164, 417, 476, 511, 710, 729
AclWI	GGATC	4 cut(s)	178, 361, 447, 460
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	609
AcyI	GRCGYC	1 cut(s)	167
AfaI	GTAC	3 cut(s)	329, 394, 811
AfiI	CCNNNNNNNGG	2 cut(s)	313, 735
AgsI	TTSAA	2 cut(s)	206, 446
AjnI	CCWGG	2 cut(s)	174, 553
AluBI	AGCT	8 cut(s)	61, 125, 192, 507, 587, 605, 722, 800
AluI	AGCT	8 cut(s)	61, 125, 192, 507, 587, 605, 722, 800
Alw21I	GWGCWC	2 cut(s)	63, 607
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	4 cut(s)	178, 361, 447, 460
AlwNI	CAGNNNCTG	2 cut(s)	128, 158
Ama87I	CYCGRG	2 cut(s)	362, 594
Aor13HI	TCCGGA	1 cut(s)	194
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	6 cut(s)	104, 125, 128, 507, 719, 800
ApoI	RAATTY	1 cut(s)	68
ArsI	GACNNNNNNTTYG	3 cut(s)	534, 566, 812
Asp700I	GAANNNNTTC	1 cut(s)	531
AspLEI	GCGC	1 cut(s)	169
AsuC2I	CCSGG	2 cut(s)	595, 596
AsuII	TTCGAA	2 cut(s)	381, 818
AvaI	CYCGRG	2 cut(s)	362, 594
BamHI	GGATCC	1 cut(s)	452
BanI	GGYRCC	1 cut(s)	166
BanII	GRGCYC	2 cut(s)	63, 607
BbsI	GAAGAC	2 cut(s)	551, 753
Bbv12I	GWGCWC	2 cut(s)	63, 607
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	6 cut(s)	112, 115, 116, 494, 731, 787
BccI	CCATC	4 cut(s)	25, 443, 572, 698
BceAI	ACGGC	2 cut(s)	26, 272
BciT130I	CCWGG	2 cut(s)	176, 555
BcnI	CCSGG	2 cut(s)	595, 596
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	1 cut(s)	617
BfmI	CTRYAG	2 cut(s)	102, 282
BfoI	RGCGCY	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	8 cut(s)	105, 126, 129, 165, 508, 511, 720, 801
BlsI	GCNGC	8 cut(s)	106, 127, 130, 166, 509, 512, 721, 802
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	4 cut(s)	176, 555, 595, 596
BmeT110I	CYCGRG	2 cut(s)	362, 594
BmiI	GGNNCC	3 cut(s)	40, 168, 454
BmrFI	CCNGG	4 cut(s)	176, 555, 595, 596
BmsI	GCATC	4 cut(s)	208, 268, 665, 812
BpiI	GAAGAC	2 cut(s)	551, 753
BplI	GAGNNNNNCTC	4 cut(s)	356, 388, 474, 506
BpmI	CTGGAG	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	188
Bpu14I	TTCGAA	2 cut(s)	381, 818
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	2 cut(s)	595, 596
BsaAI	YACGTR	1 cut(s)	834
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	553, 594
BsaWI	WCCGGW	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 735
Bse1I	ACTGG	1 cut(s)	657
Bse3DI	GCAATG	3 cut(s)	147, 485, 687
BseAI	TCCGGA	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	176, 555
BseDI	CCNNGG	2 cut(s)	553, 594
BseGI	GGATG	2 cut(s)	283, 656
BseLI	CCNNNNNNNGG	2 cut(s)	313, 735
BseMI	GCAATG	3 cut(s)	147, 485, 687
BseMII	CTCAG	2 cut(s)	135, 202
BseNI	ACTGG	1 cut(s)	657
BseRI	GAGGAG	2 cut(s)	53, 299
BseXI	GCAGC	6 cut(s)	112, 115, 116, 494, 731, 787
BseYI	CCCAGC	1 cut(s)	639
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	1 cut(s)	513
BshFI	GGCC	1 cut(s)	35
BshNI	GGYRCC	1 cut(s)	166
BsiHKAI	GWGCWC	2 cut(s)	63, 607
BsiHKCI	CYCGRG	2 cut(s)	362, 594
BsiSI	CCGG	3 cut(s)	36, 195, 595
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	2 cut(s)	313, 735
BsmAI	GTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	536
BsmI	GAATGC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	35
BsoBI	CYCGRG	2 cut(s)	362, 594
Bsp119I	TTCGAA	2 cut(s)	381, 818
Bsp1286I	GDGCHC	2 cut(s)	63, 607
Bsp13I	TCCGGA	1 cut(s)	194
Bsp1407I	TGTACA	1 cut(s)	809
Bsp143I	GATC	3 cut(s)	183, 366, 452
BspACI	CCGC	6 cut(s)	164, 417, 476, 511, 710, 729
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	2 cut(s)	134, 201
BspEI	TCCGGA	1 cut(s)	194
BspFNI	CGCG	1 cut(s)	513
BspLI	GGNNCC	3 cut(s)	40, 168, 454
BspMAI	CTGCAG	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	4 cut(s)	178, 361, 447, 460
BspT104I	TTCGAA	2 cut(s)	381, 818
BspT107I	GGYRCC	1 cut(s)	166
BsrBI	CCGCTC	2 cut(s)	164, 710
BsrDI	GCAATG	3 cut(s)	147, 485, 687
BsrGI	TGTACA	1 cut(s)	809
BsrI	ACTGG	1 cut(s)	657
BssECI	CCNNGG	2 cut(s)	553, 594
BssMI	GATC	3 cut(s)	183, 366, 452
BssNAI	GTATAC	1 cut(s)	682
BssNI	GRCGYC	1 cut(s)	167
Bst1107I	GTATAC	1 cut(s)	682
Bst2UI	CCWGG	2 cut(s)	176, 555
Bst4CI	ACNGT	2 cut(s)	442, 574
BstACI	GRCGYC	1 cut(s)	167
BstAUI	TGTACA	1 cut(s)	809
BstBAI	YACGTR	1 cut(s)	834
BstBI	TTCGAA	2 cut(s)	381, 818
BstDEI	CTNAG	4 cut(s)	121, 188, 430, 626
BstENI	CCTNNNNNAGG	1 cut(s)	311
BstF5I	GGATG	2 cut(s)	283, 656
BstFNI	CGCG	1 cut(s)	513
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	3 cut(s)	186, 369, 455
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	3 cut(s)	183, 366, 452
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 227, 482, 716, 728
BstNI	CCWGG	2 cut(s)	176, 555
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	4 cut(s)	174, 553, 593, 594
BstSFI	CTRYAG	2 cut(s)	102, 282
BstSNI	TACGTA	1 cut(s)	834
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	6 cut(s)	112, 115, 116, 494, 731, 787
BstV2I	GAAGAC	2 cut(s)	551, 753
BstX2I	RGATCY	3 cut(s)	183, 366, 452
BstYI	RGATCY	3 cut(s)	183, 366, 452
BstZ17I	GTATAC	1 cut(s)	682
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	283, 656
BveI	ACCTGC	1 cut(s)	257
CaiI	CAGNNNCTG	2 cut(s)	128, 158
CfoI	GCGC	1 cut(s)	169
Cfr9I	CCCGGG	1 cut(s)	594
Csp6I	GTAC	3 cut(s)	328, 393, 810
CviAII	CATG	5 cut(s)	473, 496, 751, 766, 778
CviQI	GTAC	3 cut(s)	328, 393, 810
DdeI	CTNAG	4 cut(s)	121, 188, 430, 626
DinI	GGCGCC	1 cut(s)	168
DpnI	GATC	3 cut(s)	185, 368, 454
DpnII	GATC	3 cut(s)	183, 366, 452
EaeI	YGGCCR	1 cut(s)	33
Ecl136II	GAGCTC	2 cut(s)	61, 605
Eco105I	TACGTA	1 cut(s)	834
Eco24I	GRGCYC	2 cut(s)	63, 607
Eco53kI	GAGCTC	2 cut(s)	61, 605
Eco57I	CTGAAG	1 cut(s)	609
Eco88I	CYCGRG	2 cut(s)	362, 594
EcoICRI	GAGCTC	2 cut(s)	61, 605
EcoNI	CCTNNNNNAGG	1 cut(s)	311
EcoRII	CCWGG	2 cut(s)	174, 553
EcoT38I	GRGCYC	2 cut(s)	63, 607
EgeI	GGCGCC	1 cut(s)	168
EheI	GGCGCC	1 cut(s)	168
FaeI	CATG	5 cut(s)	476, 499, 754, 769, 781
FaiI	YATR	8 cut(s)	474, 497, 609, 682, 752, 767, 774, 779
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	5 cut(s)	472, 495, 750, 765, 777
FauI	CCCGC	1 cut(s)	410
FblI	GTMKAC	2 cut(s)	681, 830
Fnu4HI	GCNGC	8 cut(s)	105, 126, 129, 165, 508, 511, 720, 801
FokI	GGATG	2 cut(s)	290, 643
FriOI	GRGCYC	2 cut(s)	63, 607
Fsp4HI	GCNGC	8 cut(s)	105, 126, 129, 165, 508, 511, 720, 801
FspBI	CTAG	1 cut(s)	617
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	8 cut(s)	105, 126, 129, 165, 508, 511, 720, 801
GsaI	CCCAGC	1 cut(s)	643
GsuI	CTGGAG	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	3 cut(s)	36, 195, 595
HhaI	GCGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	5 cut(s)	476, 499, 754, 769, 781
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	3 cut(s)	155, 632, 786
HpaII	CCGG	3 cut(s)	36, 195, 595
Hpy166II	GTNNAC	3 cut(s)	682, 812, 831
Hpy188I	TCNGA	2 cut(s)	135, 504
Hpy188III	TCNNGA	6 cut(s)	22, 159, 195, 275, 362, 364
Hpy8I	GTNNAC	3 cut(s)	682, 812, 831
HpyAV	CCTTC	5 cut(s)	368, 380, 407, 536, 825
HpyCH4III	ACNGT	2 cut(s)	442, 574
HpyCH4IV	ACGT	2 cut(s)	391, 833
HpyCH4V	TGCA	7 cut(s)	104, 152, 252, 321, 398, 548, 803
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 227, 482, 716, 728
HpyF3I	CTNAG	4 cut(s)	121, 188, 430, 626
HpySE526I	ACGT	2 cut(s)	391, 833
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	5 cut(s)	476, 499, 754, 769, 781
HspAI	GCGC	1 cut(s)	167
KasI	GGCGCC	1 cut(s)	166
Kpn2I	TCCGGA	1 cut(s)	194
Kzo9I	GATC	3 cut(s)	183, 366, 452
LmnI	GCTCC	7 cut(s)	38, 66, 161, 197, 482, 707, 769
Lsp1109I	GCAGC	6 cut(s)	112, 115, 116, 494, 731, 787
LweI	GCATC	4 cut(s)	208, 268, 665, 812
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	2 cut(s)	391, 833
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	185, 368, 454
MbiI	CCGCTC	2 cut(s)	164, 710
MboI	GATC	3 cut(s)	183, 366, 452
MboII	GAAGA	5 cut(s)	395, 458, 551, 554, 758
MflI	RGATCY	3 cut(s)	183, 366, 452
MhlI	GDGCHC	2 cut(s)	63, 607
MluCI	AATT	4 cut(s)	6, 68, 376, 675
Mly113I	GGCGCC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	9 cut(s)	74, 180, 197, 306, 317, 320, 380, 670, 729
MroI	TCCGGA	1 cut(s)	194
MroXI	GAANNNNTTC	1 cut(s)	531
MseI	TTAA	5 cut(s)	86, 113, 425, 537, 756
MspA1I	CMGCKG	3 cut(s)	125, 587, 722
MspI	CCGG	3 cut(s)	36, 195, 595
MspR9I	CCNGG	4 cut(s)	176, 555, 595, 596
Mva1269I	GAATGC	1 cut(s)	323
MvaI	CCWGG	2 cut(s)	176, 555
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	5 cut(s)	104, 227, 482, 716, 728
NarI	GGCGCC	1 cut(s)	167
NciI	CCSGG	2 cut(s)	595, 596
NdeII	GATC	3 cut(s)	183, 366, 452
NlaIII	CATG	5 cut(s)	476, 499, 754, 769, 781
NlaIV	GGNNCC	3 cut(s)	40, 168, 454
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	476
NspV	TTCGAA	2 cut(s)	381, 818
PaeR7I	CTCGAG	1 cut(s)	362
PaqCI	CACCTGC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	830
PctI	GAATGC	1 cut(s)	323
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	3 cut(s)	155, 632, 786
PkrI	GCNGC	8 cut(s)	106, 127, 130, 166, 509, 512, 721, 802
PluTI	GGCGCC	1 cut(s)	170
Ppu21I	YACGTR	1 cut(s)	834
Psp124BI	GAGCTC	2 cut(s)	63, 607
Psp6I	CCWGG	2 cut(s)	174, 553
PspFI	CCCAGC	1 cut(s)	639
PspGI	CCWGG	2 cut(s)	174, 553
PspN4I	GGNNCC	3 cut(s)	40, 168, 454
PstI	CTGCAG	1 cut(s)	106
PstNI	CAGNNNCTG	2 cut(s)	128, 158
PsuI	RGATCY	3 cut(s)	183, 366, 452
PvuII	CAGCTG	3 cut(s)	125, 587, 722
RsaI	GTAC	3 cut(s)	329, 394, 811
RsaNI	GTAC	3 cut(s)	328, 393, 810
SacI	GAGCTC	2 cut(s)	63, 607
SaqAI	TTAA	5 cut(s)	86, 113, 425, 537, 756
SatI	GCNGC	8 cut(s)	105, 126, 129, 165, 508, 511, 720, 801
Sau3AI	GATC	3 cut(s)	183, 366, 452
ScaI	AGTACT	1 cut(s)	329
ScrFI	CCNGG	4 cut(s)	176, 555, 595, 596
SduI	GDGCHC	2 cut(s)	63, 607
SfaNI	GCATC	4 cut(s)	208, 268, 665, 812
SfcI	CTRYAG	2 cut(s)	102, 282
SfoI	GGCGCC	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	362
SfuI	TTCGAA	2 cut(s)	381, 818
SlaI	CTCGAG	1 cut(s)	362
SmaI	CCCGGG	1 cut(s)	596
SmlI	CTYRAG	2 cut(s)	311, 362
SmoI	CTYRAG	2 cut(s)	311, 362
SnaBI	TACGTA	1 cut(s)	834
Sse9I	AATT	4 cut(s)	6, 68, 376, 675
SsiI	CCGC	6 cut(s)	164, 417, 476, 511, 710, 729
SspDI	GGCGCC	1 cut(s)	166
SspMI	CTAG	1 cut(s)	617
SstI	GAGCTC	2 cut(s)	63, 607
StyD4I	CCNGG	4 cut(s)	174, 553, 593, 594
TaaI	ACNGT	2 cut(s)	442, 574
TaiI	ACGT	2 cut(s)	394, 836
TaqI	TCGA	5 cut(s)	363, 381, 565, 789, 818
TasI	AATT	4 cut(s)	6, 68, 376, 675
TatI	WGTACW	2 cut(s)	327, 809
TauI	GCSGC	2 cut(s)	167, 513
TfiI	GAWTC	3 cut(s)	155, 632, 786
Tru1I	TTAA	5 cut(s)	86, 113, 425, 537, 756
Tru9I	TTAA	5 cut(s)	86, 113, 425, 537, 756
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	6 cut(s)	104, 125, 128, 507, 719, 800
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	794
TspGWI	ACGGA	1 cut(s)	652
TspMI	CCCGGG	1 cut(s)	594
XagI	CCTNNNNNAGG	1 cut(s)	311
XapI	RAATTY	1 cut(s)	68
XceI	RCATGY	1 cut(s)	476
XhoI	CTCGAG	1 cut(s)	362
XmaI	CCCGGG	1 cut(s)	594
XmiI	GTMKAC	2 cut(s)	681, 830
XmnI	GAANNNNTTC	1 cut(s)	531
XspI	CTAG	1 cut(s)	617
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.