Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008308

Physical Location & Seq

Genomic Coordinates Forward (+)

3950396 .. 3953229

Gene Structure 2834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGATTACCTTCACTGCACATTTAAACACGCATTATCAACTCAGAGAGAGAGAGAGAGAGAGAGAGGAGAGATGGGGGAGGAGGAGCAAAGCTCAGTGGGAGTGGAAGGAGAAGAAGAAGAATTGGCAGAGAAGGTGGGGGAGGCAGAGACATGGAACCAAAGGAAACAAACCCTTATACTCGAAATCTCCTCAAAGCTCATCCATGGCGATCTCGAATCCAAGATTGAAGCCGCCAGAGATATCAGAAACTTGGTCAGAAAGTCTTCATCTTCGTCCTCGTCCTCGTCTTCCAAGACTCGCTCGAAGCTGGGCGCGGCGGGCGTGATTCCGCCGCTGGTGTTGATGCTCTGCTCTCCTAATCCGGATGCGCGCCAAGTTTCCCTCCTCGCCCTCCTCAACCTCGCCGTCCGAAACGAACGGAATAAGGTCAAGATCGTGATGGCTGGAGCCGTCCCCCCTCTTGTTGAGCTCCTCAAGTTCCAAAATGGTAGTTTAAGGGATTTAGCAACTGCAGCAATCTTAACACTCTCAGCTGCTGCACTGAACAAGCCAATCATTGCAGACTCTGGAGCTGCACCTCTCCTGGTTGAGATCCTGAGCTCCGGAAGTGTTCAAGGAAAAGTTGATGCCGTGACCGCCTTACACAATCTCTCTACCTGCAAAGAGAACTCAACTGCTATTCTGGATGCTACAGCTGTTCGTCCTCTCATCAACCTTCTCAAAGAATGCAAAAAGTACTCCAAGTTTGCCGAAAAGACTACTGCCCTTCTTGAGATCCTATCCAACTCTGAAGAAGGGCGTACTGCAATCTCAAACTCAGAAGGTGGGATATTAACCTTAGTAGAGACTGTTGAAGATGGATCCCTAATCAGCACACAACACGCGGTTGGAGCATTGCTTTCCATGTGTCAGAGCTGCCGCGACAAATACAGGGAACTCATTCTTAATGAAGGTGCAGTCCCAGGTCTTCTTCGACTGACAGTAGATGGCACAGCTGAAGCTCGGGAGAGAGCTCGTACGCTGCTAGACTTGCTTAGAGATTCTCCCCAGCAAAAGAAATTGGCCTCCTCCGTTCTGGAGAGAATTGTATACGACATTGCCACTAGGGTCGATGGAGCAGACAAAGCAGCTGAAACTGCAAAAAGGTTACTGGAAGACATGGTTAAAAGAAGCATGGAGCATAGCATGGACCGAATCCAGCAGAGAGCTGCATCTTGTACACCTTCGGATGCTCAGTCTACTTGTTTGGGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

420

Amino Acids

45.3

Weight (kDa)

6.01

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	181 - 345	1.5e-09	ARMC5
ARM_PUB	PF25598	211 - 356	7.9e-17	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12710
fragaria_vesca	FvH4_6g40430 FvH4_6g40430 FvH4_6g40430 FvH4_6g40430 FvH4_6g40430
malus_domestica	MD09G1130000.v1.1 MD17G1105200.v1.1
prunus_persica	Prupe.3G195100_v2.0.a1 Prupe.3G195100_v2.0.a1 Prupe.3G195100_v2.0.a1
pyrus_communis	pycom09g05310 pycom17g10920
rosa_chinensis	RchiOBHm_Chr2g0155661
rosa_laevigata	RLG00000020852
rosa_multiflora	Rmu_ssc0000430.1_g000004
rosa_roxburghii	Rroxscaffold_2G00093580
rosa_rugosa	Rorug02G0448900
rosa_samantha	Rh2AG515000 Rh2BG525900 Rh2CG499900 Rh2DG534800
rosa_wichuraiana	Rw2G042320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	668
AccI	GTMKAC	2 cut(s)	1092, 1241
AccII	CGCG	4 cut(s)	317, 373, 887, 924
AccIII	TCCGGA	2 cut(s)	364, 605
AciI	CCGC	8 cut(s)	234, 317, 320, 332, 335, 639, 887, 922
AclWI	GGATC	4 cut(s)	589, 772, 858, 871
AcuI	CTGAAG	2 cut(s)	813, 1020
AfaI	GTAC	4 cut(s)	740, 805, 1021, 1222
AgsI	TTSAA	3 cut(s)	230, 617, 857
AjnI	CCWGG	2 cut(s)	585, 964
Alw21I	GWGCWC	3 cut(s)	474, 605, 1018
Alw26I	GTCTC	2 cut(s)	143, 842
AlwI	GGATC	4 cut(s)	589, 772, 858, 871
AlwNI	CAGNNNCTG	2 cut(s)	539, 569
Ama87I	CYCGRG	1 cut(s)	1005
Aor13HI	TCCGGA	2 cut(s)	364, 605
AoxI	GGCC	1 cut(s)	1065
ApeKI	GCWGC	8 cut(s)	515, 536, 539, 575, 918, 1024, 1130, 1211
Asp700I	GAANNNNTTC	2 cut(s)	265, 942
AspLEI	GCGC	3 cut(s)	317, 373, 375
AspS9I	GGNCC	1 cut(s)	1192
AvaI	CYCGRG	1 cut(s)	1005
AvaII	GGWCC	1 cut(s)	1192
BamHI	GGATCC	1 cut(s)	863
BanII	GRGCYC	3 cut(s)	474, 605, 1018
BbsI	GAAGAC	4 cut(s)	258, 282, 962, 1164
Bbv12I	GWGCWC	3 cut(s)	474, 605, 1018
BbvI	GCAGC	8 cut(s)	523, 526, 527, 562, 905, 1011, 1142, 1198
BccI	CCATC	5 cut(s)	67, 436, 854, 983, 1109
BceAI	ACGGC	3 cut(s)	392, 437, 617
BciT130I	CCWGG	2 cut(s)	587, 966
BcoDI	GTCTC	2 cut(s)	143, 842
BfaI	CTAG	2 cut(s)	1028, 1107
BfmI	CTRYAG	2 cut(s)	513, 693
BfuAI	ACCTGC	1 cut(s)	668
BmcAI	AGTACT	1 cut(s)	740
Bme1390I	CCNGG	2 cut(s)	587, 966
Bme18I	GGWCC	1 cut(s)	1192
BmeT110I	CYCGRG	1 cut(s)	1005
BmgT120I	GGNCC	1 cut(s)	1192
BmiI	GGNNCC	3 cut(s)	158, 451, 865
BmrFI	CCNGG	2 cut(s)	587, 966
BmsI	GCATC	6 cut(s)	336, 358, 619, 679, 1222, 1223
BpiI	GAAGAC	4 cut(s)	258, 282, 962, 1164
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
BpmI	CTGGAG	3 cut(s)	468, 591, 1100
Bpu10I	CCTNAGC	1 cut(s)	599
BpuEI	CTTGAG	2 cut(s)	461, 794
BsaJI	CCNNGG	2 cut(s)	205, 964
BsaWI	WCCGGW	2 cut(s)	364, 605
Bse1I	ACTGG	1 cut(s)	1158
Bse3DI	GCAATG	3 cut(s)	558, 896, 1098
BseAI	TCCGGA	2 cut(s)	364, 605
BseBI	CCWGG	2 cut(s)	587, 966
BseDI	CCNNGG	2 cut(s)	205, 964
BseGI	GGATG	4 cut(s)	201, 373, 694, 1237
BseMI	GCAATG	3 cut(s)	558, 896, 1098
BseMII	CTCAG	6 cut(s)	56, 108, 546, 590, 834, 1250
BseNI	ACTGG	1 cut(s)	1158
BsePI	GCGCGC	1 cut(s)	371
BseRI	GAGGAG	8 cut(s)	81, 95, 98, 181, 377, 386, 464, 1060
BseXI	GCAGC	8 cut(s)	523, 526, 527, 562, 905, 1011, 1142, 1198
BseYI	CCCAGC	2 cut(s)	310, 1050
BsgI	GTGCAG	3 cut(s)	525, 561, 978
Bsh1236I	CGCG	4 cut(s)	317, 373, 887, 924
BshFI	GGCC	1 cut(s)	1067
BsiHKAI	GWGCWC	3 cut(s)	474, 605, 1018
BsiHKCI	CYCGRG	1 cut(s)	1005
BsiSI	CCGG	2 cut(s)	365, 606
BsiWI	CGTACG	1 cut(s)	1019
BslFI	GGGAC	2 cut(s)	440, 947
BsmAI	GTCTC	2 cut(s)	143, 842
BsmFI	GGGAC	2 cut(s)	440, 947
BsmI	GAATGC	1 cut(s)	734
BsnI	GGCC	1 cut(s)	1067
BsoBI	CYCGRG	1 cut(s)	1005
Bsp1286I	GDGCHC	3 cut(s)	474, 605, 1018
Bsp13I	TCCGGA	2 cut(s)	364, 605
Bsp1407I	TGTACA	1 cut(s)	1220
Bsp143I	GATC	5 cut(s)	211, 435, 594, 777, 863
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	8 cut(s)	234, 317, 320, 332, 335, 639, 887, 922
BspANI	GGCC	1 cut(s)	1067
BspCNI	CTCAG	6 cut(s)	55, 107, 545, 591, 833, 1249
BspEI	TCCGGA	2 cut(s)	364, 605
BspFNI	CGCG	4 cut(s)	317, 373, 887, 924
BspLI	GGNNCC	3 cut(s)	158, 451, 865
BspMAI	CTGCAG	1 cut(s)	517
BspMI	ACCTGC	1 cut(s)	668
BspPI	GGATC	4 cut(s)	589, 772, 858, 871
BsrDI	GCAATG	3 cut(s)	558, 896, 1098
BsrGI	TGTACA	1 cut(s)	1220
BsrI	ACTGG	1 cut(s)	1158
BssECI	CCNNGG	2 cut(s)	205, 964
BssHII	GCGCGC	1 cut(s)	371
BssMI	GATC	5 cut(s)	211, 435, 594, 777, 863
BssNAI	GTATAC	1 cut(s)	1093
BssT1I	CCWWGG	1 cut(s)	205
Bst1107I	GTATAC	1 cut(s)	1093
Bst2UI	CCWGG	2 cut(s)	587, 966
Bst4CI	ACNGT	2 cut(s)	853, 985
BstAUI	TGTACA	1 cut(s)	1220
BstC8I	GCNNGC	2 cut(s)	322, 373
BstDEI	CTNAG	8 cut(s)	42, 94, 532, 599, 820, 841, 1037, 1236
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	4 cut(s)	201, 373, 694, 1237
BstFNI	CGCG	4 cut(s)	317, 373, 887, 924
BstHHI	GCGC	3 cut(s)	317, 373, 375
BstKTI	GATC	5 cut(s)	214, 438, 597, 780, 866
BstMAI	GTCTC	2 cut(s)	143, 842
BstMBI	GATC	5 cut(s)	211, 435, 594, 777, 863
BstMWI	GCNNNNNNNGC	7 cut(s)	321, 515, 638, 893, 1033, 1127, 1139
BstNI	CCWGG	2 cut(s)	587, 966
BstSCI	CCNGG	2 cut(s)	585, 964
BstSFI	CTRYAG	2 cut(s)	513, 693
BstUI	CGCG	4 cut(s)	317, 373, 887, 924
BstV1I	GCAGC	8 cut(s)	523, 526, 527, 562, 905, 1011, 1142, 1198
BstV2I	GAAGAC	4 cut(s)	258, 282, 962, 1164
BstX2I	RGATCY	3 cut(s)	594, 777, 863
BstYI	RGATCY	3 cut(s)	594, 777, 863
BstZ17I	GTATAC	1 cut(s)	1093
BsuRI	GGCC	1 cut(s)	1067
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	4 cut(s)	201, 373, 694, 1237
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	3 cut(s)	13, 102, 542
BveI	ACCTGC	1 cut(s)	668
Cac8I	GCNNGC	2 cut(s)	322, 373
CaiI	CAGNNNCTG	2 cut(s)	539, 569
CfoI	GCGC	3 cut(s)	317, 373, 375
Cfr13I	GGNCC	1 cut(s)	1192
Csp6I	GTAC	4 cut(s)	739, 804, 1020, 1221
CviAII	CATG	6 cut(s)	153, 206, 907, 1162, 1177, 1189
CviQI	GTAC	4 cut(s)	739, 804, 1020, 1221
DdeI	CTNAG	8 cut(s)	42, 94, 532, 599, 820, 841, 1037, 1236
DpnI	GATC	5 cut(s)	213, 437, 596, 779, 865
DpnII	GATC	5 cut(s)	211, 435, 594, 777, 863
DraI	TTTAAA	1 cut(s)	25
EciI	GGCGGA	1 cut(s)	321
Ecl136II	GAGCTC	3 cut(s)	472, 603, 1016
Eco130I	CCWWGG	1 cut(s)	205
Eco24I	GRGCYC	3 cut(s)	474, 605, 1018
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	1192
Eco53kI	GAGCTC	3 cut(s)	472, 603, 1016
Eco57I	CTGAAG	2 cut(s)	813, 1020
Eco88I	CYCGRG	1 cut(s)	1005
EcoICRI	GAGCTC	3 cut(s)	472, 603, 1016
EcoRII	CCWGG	2 cut(s)	585, 964
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	205
EcoT38I	GRGCYC	3 cut(s)	474, 605, 1018
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	6 cut(s)	156, 209, 910, 1165, 1180, 1192
FaiI	YATR	9 cut(s)	154, 179, 207, 908, 1093, 1163, 1178, 1185, 1190
FaqI	GGGAC	2 cut(s)	440, 947
FatI	CATG	6 cut(s)	152, 205, 906, 1161, 1176, 1188
FauI	CCCGC	1 cut(s)	313
FblI	GTMKAC	2 cut(s)	1092, 1241
FokI	GGATG	4 cut(s)	188, 380, 701, 1244
FriOI	GRGCYC	3 cut(s)	474, 605, 1018
FspBI	CTAG	2 cut(s)	1028, 1107
GlaI	GCGC	3 cut(s)	316, 372, 374
GsaI	CCCAGC	2 cut(s)	314, 1054
GsuI	CTGGAG	3 cut(s)	468, 591, 1100
HaeIII	GGCC	1 cut(s)	1067
HapII	CCGG	2 cut(s)	365, 606
HhaI	GCGC	3 cut(s)	317, 373, 375
Hin1II	CATG	6 cut(s)	156, 209, 910, 1165, 1180, 1192
Hin6I	GCGC	3 cut(s)	315, 371, 373
HinP1I	GCGC	3 cut(s)	315, 371, 373
HinfI	GANTC	6 cut(s)	218, 298, 328, 566, 1043, 1197
HpaII	CCGG	2 cut(s)	365, 606
Hpy166II	GTNNAC	3 cut(s)	1093, 1223, 1242
Hpy188I	TCNGA	8 cut(s)	45, 248, 260, 413, 793, 823, 915, 1231
Hpy8I	GTNNAC	3 cut(s)	1093, 1223, 1242
HpyAV	CCTTC	9 cut(s)	20, 101, 127, 728, 779, 791, 818, 947, 1236
HpyCH4III	ACNGT	2 cut(s)	853, 985
HpyF10VI	GCNNNNNNNGC	7 cut(s)	321, 515, 638, 893, 1033, 1127, 1139
HpyF3I	CTNAG	8 cut(s)	42, 94, 532, 599, 820, 841, 1037, 1236
Hsp92II	CATG	6 cut(s)	156, 209, 910, 1165, 1180, 1192
HspAI	GCGC	3 cut(s)	315, 371, 373
Kpn2I	TCCGGA	2 cut(s)	364, 605
Kzo9I	GATC	5 cut(s)	211, 435, 594, 777, 863
LmnI	GCTCC	8 cut(s)	85, 449, 477, 572, 608, 893, 1118, 1180
Lsp1109I	GCAGC	8 cut(s)	523, 526, 527, 562, 905, 1011, 1142, 1198
LweI	GCATC	6 cut(s)	336, 358, 619, 679, 1222, 1223
MaeI	CTAG	2 cut(s)	1028, 1107
MaeIII	GTNAC	2 cut(s)	634, 1149
MalI	GATC	5 cut(s)	213, 437, 596, 779, 865
MboI	GATC	5 cut(s)	211, 435, 594, 777, 863
MflI	RGATCY	3 cut(s)	594, 777, 863
MhlI	GDGCHC	3 cut(s)	474, 605, 1018
MluCI	AATT	3 cut(s)	122, 1061, 1086
MlyI	GAGTC	2 cut(s)	292, 560
MmeI	TCCRAC	2 cut(s)	810, 871
MroI	TCCGGA	2 cut(s)	364, 605
MroXI	GAANNNNTTC	2 cut(s)	265, 942
MseI	TTAA	7 cut(s)	24, 497, 524, 836, 948, 1167, 1258
MspA1I	CMGCKG	5 cut(s)	337, 536, 698, 998, 1133
MspI	CCGG	2 cut(s)	365, 606
MspR9I	CCNGG	2 cut(s)	587, 966
Mva1269I	GAATGC	1 cut(s)	734
MvaI	CCWGG	2 cut(s)	587, 966
MvnI	CGCG	4 cut(s)	317, 373, 887, 924
MwoI	GCNNNNNNNGC	7 cut(s)	321, 515, 638, 893, 1033, 1127, 1139
NcoI	CCATGG	1 cut(s)	205
NdeII	GATC	5 cut(s)	211, 435, 594, 777, 863
NlaIII	CATG	6 cut(s)	156, 209, 910, 1165, 1180, 1192
NlaIV	GGNNCC	3 cut(s)	158, 451, 865
NmuCI	GTSAC	1 cut(s)	634
PauI	GCGCGC	1 cut(s)	371
PctI	GAATGC	1 cut(s)	734
PdmI	GAANNNNTTC	2 cut(s)	265, 942
PfeI	GAWTC	4 cut(s)	218, 328, 1043, 1197
Pfl23II	CGTACG	1 cut(s)	1019
PleI	GAGTC	2 cut(s)	292, 560
PpsI	GAGTC	2 cut(s)	292, 560
Psp124BI	GAGCTC	3 cut(s)	474, 605, 1018
Psp6I	CCWGG	2 cut(s)	585, 964
PspFI	CCCAGC	2 cut(s)	310, 1050
PspGI	CCWGG	2 cut(s)	585, 964
PspLI	CGTACG	1 cut(s)	1019
PspN4I	GGNNCC	3 cut(s)	158, 451, 865
PspPI	GGNCC	1 cut(s)	1192
PstI	CTGCAG	1 cut(s)	517
PstNI	CAGNNNCTG	2 cut(s)	539, 569
PsuI	RGATCY	3 cut(s)	594, 777, 863
PteI	GCGCGC	1 cut(s)	371
PvuII	CAGCTG	4 cut(s)	536, 698, 998, 1133
RsaI	GTAC	4 cut(s)	740, 805, 1021, 1222
RsaNI	GTAC	4 cut(s)	739, 804, 1020, 1221
SacI	GAGCTC	3 cut(s)	474, 605, 1018
SaqAI	TTAA	7 cut(s)	24, 497, 524, 836, 948, 1167, 1258
Sau3AI	GATC	5 cut(s)	211, 435, 594, 777, 863
Sau96I	GGNCC	1 cut(s)	1192
ScaI	AGTACT	1 cut(s)	740
SchI	GAGTC	2 cut(s)	292, 560
ScrFI	CCNGG	2 cut(s)	587, 966
SduI	GDGCHC	3 cut(s)	474, 605, 1018
SfaNI	GCATC	6 cut(s)	336, 358, 619, 679, 1222, 1223
SfcI	CTRYAG	2 cut(s)	513, 693
SinI	GGWCC	1 cut(s)	1192
SmlI	CTYRAG	2 cut(s)	476, 773
SmoI	CTYRAG	2 cut(s)	476, 773
Sse9I	AATT	3 cut(s)	122, 1061, 1086
SsiI	CCGC	8 cut(s)	234, 317, 320, 332, 335, 639, 887, 922
SspMI	CTAG	2 cut(s)	1028, 1107
SstI	GAGCTC	3 cut(s)	474, 605, 1018
StyD4I	CCNGG	2 cut(s)	585, 964
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	853, 985
TaqI	TCGA	5 cut(s)	183, 216, 305, 976, 1113
TaqII	GACCGA	1 cut(s)	1209
TasI	AATT	3 cut(s)	122, 1061, 1086
TatI	WGTACW	2 cut(s)	738, 1220
TauI	GCSGC	4 cut(s)	236, 320, 337, 924
TfiI	GAWTC	4 cut(s)	218, 328, 1043, 1197
Tru1I	TTAA	7 cut(s)	24, 497, 524, 836, 948, 1167, 1258
Tru9I	TTAA	7 cut(s)	24, 497, 524, 836, 948, 1167, 1258
TscAI	CASTG	3 cut(s)	20, 102, 549
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	8 cut(s)	515, 536, 539, 575, 918, 1024, 1130, 1211
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	2 cut(s)	258, 966
TspGWI	ACGGA	2 cut(s)	436, 1063
TspRI	CASTG	3 cut(s)	20, 102, 549
VpaK11BI	GGWCC	1 cut(s)	1192
XmiI	GTMKAC	2 cut(s)	1092, 1241
XmnI	GAANNNNTTC	2 cut(s)	265, 942
XspI	CTAG	2 cut(s)	1028, 1107
ZrmI	AGTACT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.