Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008308

Physical Location & Seq

Genomic Coordinates Forward (+)

10025002 .. 10027561

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1130000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGGGGAGGAGGAGCAAAGCTCAGTGGGAGTGGAAGAAGAAGAAGAATTGGCAGAGACGGTGGAGGAGGCAGAGACATGGAACCAAAGGAAACAAACCCTTATACTCGAAATCTCCTCAAAGCTCGTCCATGGCGATCTCGAATCCAAGATTGAAGCCGCCAGAGATATCAGAAACTTGGTCAGAAAGTCTTCATCTTCGTCCTCGTCCTCGTCTTCCAAGACTCGCTCGAAGCTGGGCGCGGCGGGCGTGATTCCGCCGCTGGTGTTGATGCTCTGCTCTCCTAATCCGGATGCGCGCCAAGTTTCCCTCCTCGCCCTCCTCAACCTCGCCGTCCGAAACGAACGGAATAAGGTCAAGATTGTGATGGCAGGAGCTGTCCCCCCGCTTGTTGAGCTCCTCAAGTTCCAAAATGGTAGTTTAAGGGATTTAGCAACTGCAGCAATCTTAACACTCTCAGCTGCTGCACTGAACAAGCCAATCATTGCAGATTCTGGAGCTGCACCTCTCCTGGTTGAGATCCTGAGCTCCGGAAGTGTTCAAGGAAAAGTTGATGCCGTGACCGCCTTACACAATCTCTCTACCTGCAAAGAGAACTCAACTGCTATTCTGGATGCTACAGCTGTTCGTCCTCTCATTAACCTTCTCAAAGAATGCAAAAAGTACTCCAAGTTTGCTGAAAAGACTACTGCCCTTCTCGAGATCCTATCCAACTCTGAAGAAGGGTGTACTGCAATCTCAAACTCAGAAGGTGGGATATTAACCTTAGTAGAGACTGTTGAAGATGGGTCCCTAATAAGCACACAACACGCGGTTGGAGCATTGCTCTCCATGTGTCAGAGCTGCCGCGACAAATACAGGGAACTCATTCTTAATGAAGGTGCAGTCCCAGGTCTTCTTCGACTGACAGTAGATGGCACAGCTGAAGCTCGGGAGAGAGCTCGTATGCTGCTAGACTTGCTTAGAGATTCTCCCCAGCAAAAGCAATTGGCCTCCTCCGTTCTGGAGAGAATTGTATACGACATTGCCACTAGGGTCGATGGAGCAGACAAAGCAGCTGAAACTGCAAAAAGGTTACTGGAAGACATGGTTAAAAGAAGCATGGAGCATAGCATGGACCGAATCCAGCAGAGAGCTGCATCTTGTACACCTTCGGATACTCAGTCTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

391

Amino Acids

41.94

Weight (kDa)

5.35

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	153 - 308	9.3e-11	ARMC5
ARM_PUB	PF25598	186 - 332	4.9e-17	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12710
fragaria_vesca	FvH4_6g40430 FvH4_6g40430 FvH4_6g40430 FvH4_6g40430 FvH4_6g40430
malus_domestica	MD09G1130000.v1.1 MD17G1105200.v1.1
prunus_persica	Prupe.3G195100_v2.0.a1 Prupe.3G195100_v2.0.a1 Prupe.3G195100_v2.0.a1
pyrus_communis	pycom09g05310 pycom17g10920
rosa_chinensis	RchiOBHm_Chr2g0155661
rosa_laevigata	RLG00000020852
rosa_multiflora	Rmu_ssc0000430.1_g000004
rosa_roxburghii	Rroxscaffold_2G00093580
rosa_rugosa	Rorug02G0448900
rosa_samantha	Rh2AG515000 Rh2BG525900 Rh2CG499900 Rh2DG534800
rosa_wichuraiana	Rw2G042320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	593
AccI	GTMKAC	2 cut(s)	1017, 1166
AccII	CGCG	4 cut(s)	242, 298, 812, 849
AccIII	TCCGGA	2 cut(s)	289, 530
AciI	CCGC	9 cut(s)	159, 242, 245, 257, 260, 386, 564, 812, 847
AclWI	GGATC	2 cut(s)	514, 697
AcuI	CTGAAG	2 cut(s)	738, 945
AfaI	GTAC	3 cut(s)	665, 730, 1147
AgsI	TTSAA	3 cut(s)	155, 542, 782
AjnI	CCWGG	2 cut(s)	510, 889
Alw21I	GWGCWC	3 cut(s)	399, 530, 943
Alw26I	GTCTC	3 cut(s)	50, 68, 767
AlwI	GGATC	2 cut(s)	514, 697
AlwNI	CAGNNNCTG	3 cut(s)	377, 464, 494
Ama87I	CYCGRG	2 cut(s)	698, 930
Aor13HI	TCCGGA	2 cut(s)	289, 530
AoxI	GGCC	1 cut(s)	990
ApeKI	GCWGC	8 cut(s)	440, 461, 464, 500, 843, 949, 1055, 1136
Asp700I	GAANNNNTTC	2 cut(s)	190, 867
AspLEI	GCGC	3 cut(s)	242, 298, 300
AspS9I	GGNCC	2 cut(s)	789, 1117
AvaI	CYCGRG	2 cut(s)	698, 930
AvaII	GGWCC	2 cut(s)	789, 1117
BanII	GRGCYC	3 cut(s)	399, 530, 943
BbsI	GAAGAC	4 cut(s)	183, 207, 887, 1089
Bbv12I	GWGCWC	3 cut(s)	399, 530, 943
BbvI	GCAGC	8 cut(s)	448, 451, 452, 487, 830, 936, 1067, 1123
BccI	CCATC	4 cut(s)	361, 779, 908, 1034
BceAI	ACGGC	2 cut(s)	317, 542
BciT130I	CCWGG	2 cut(s)	512, 891
BciVI	GTATCC	1 cut(s)	1150
BcoDI	GTCTC	3 cut(s)	50, 68, 767
BfaI	CTAG	2 cut(s)	953, 1032
BfmI	CTRYAG	2 cut(s)	438, 618
BfuAI	ACCTGC	1 cut(s)	593
BfuI	GTATCC	1 cut(s)	1150
BmcAI	AGTACT	1 cut(s)	665
Bme1390I	CCNGG	2 cut(s)	512, 891
Bme18I	GGWCC	2 cut(s)	789, 1117
BmeT110I	CYCGRG	2 cut(s)	698, 930
BmgT120I	GGNCC	2 cut(s)	789, 1117
BmiI	GGNNCC	3 cut(s)	83, 790, 791
BmrFI	CCNGG	2 cut(s)	512, 891
BmsI	GCATC	5 cut(s)	261, 283, 544, 604, 1148
BpiI	GAAGAC	4 cut(s)	183, 207, 887, 1089
BplI	GAGNNNNNCTC	3 cut(s)	37, 810, 842
BpmI	CTGGAG	2 cut(s)	516, 1025
Bpu10I	CCTNAGC	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	386
BsaAI	YACGTR	1 cut(s)	1170
BsaJI	CCNNGG	2 cut(s)	130, 889
BsaWI	WCCGGW	2 cut(s)	289, 530
Bse1I	ACTGG	1 cut(s)	1083
Bse3DI	GCAATG	3 cut(s)	483, 821, 1023
BseAI	TCCGGA	2 cut(s)	289, 530
BseBI	CCWGG	2 cut(s)	512, 891
BseDI	CCNNGG	2 cut(s)	130, 889
BseGI	GGATG	2 cut(s)	298, 619
BseMI	GCAATG	3 cut(s)	483, 821, 1023
BseMII	CTCAG	4 cut(s)	36, 471, 515, 759
BseNI	ACTGG	1 cut(s)	1083
BsePI	GCGCGC	1 cut(s)	296
BseRI	GAGGAG	8 cut(s)	23, 26, 80, 106, 302, 311, 389, 985
BseXI	GCAGC	8 cut(s)	448, 451, 452, 487, 830, 936, 1067, 1123
BseYI	CCCAGC	2 cut(s)	235, 975
BsgI	GTGCAG	3 cut(s)	450, 486, 903
Bsh1236I	CGCG	4 cut(s)	242, 298, 812, 849
BshFI	GGCC	1 cut(s)	992
BsiHKAI	GWGCWC	3 cut(s)	399, 530, 943
BsiHKCI	CYCGRG	2 cut(s)	698, 930
BsiSI	CCGG	2 cut(s)	290, 531
BslFI	GGGAC	3 cut(s)	365, 775, 872
BsmAI	GTCTC	3 cut(s)	50, 68, 767
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	3 cut(s)	365, 775, 872
BsmI	GAATGC	1 cut(s)	659
BsnI	GGCC	1 cut(s)	992
BsoBI	CYCGRG	2 cut(s)	698, 930
Bsp1286I	GDGCHC	3 cut(s)	399, 530, 943
Bsp13I	TCCGGA	2 cut(s)	289, 530
Bsp1407I	TGTACA	1 cut(s)	1145
Bsp143I	GATC	3 cut(s)	136, 519, 702
Bsp19I	CCATGG	1 cut(s)	130
BspACI	CCGC	9 cut(s)	159, 242, 245, 257, 260, 386, 564, 812, 847
BspANI	GGCC	1 cut(s)	992
BspCNI	CTCAG	4 cut(s)	35, 470, 516, 758
BspEI	TCCGGA	2 cut(s)	289, 530
BspFNI	CGCG	4 cut(s)	242, 298, 812, 849
BspLI	GGNNCC	3 cut(s)	83, 790, 791
BspMAI	CTGCAG	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	593
BspPI	GGATC	2 cut(s)	514, 697
BsrDI	GCAATG	3 cut(s)	483, 821, 1023
BsrGI	TGTACA	1 cut(s)	1145
BsrI	ACTGG	1 cut(s)	1083
BssECI	CCNNGG	2 cut(s)	130, 889
BssHII	GCGCGC	1 cut(s)	296
BssMI	GATC	3 cut(s)	136, 519, 702
BssNAI	GTATAC	1 cut(s)	1018
BssT1I	CCWWGG	1 cut(s)	130
Bst1107I	GTATAC	1 cut(s)	1018
Bst2UI	CCWGG	2 cut(s)	512, 891
Bst4CI	ACNGT	3 cut(s)	61, 778, 910
BstAUI	TGTACA	1 cut(s)	1145
BstBAI	YACGTR	1 cut(s)	1170
BstC8I	GCNNGC	2 cut(s)	247, 298
BstDEI	CTNAG	7 cut(s)	22, 457, 524, 745, 766, 962, 1161
BstDSI	CCRYGG	1 cut(s)	130
BstF5I	GGATG	2 cut(s)	298, 619
BstFNI	CGCG	4 cut(s)	242, 298, 812, 849
BstHHI	GCGC	3 cut(s)	242, 298, 300
BstKTI	GATC	3 cut(s)	139, 522, 705
BstMAI	GTCTC	3 cut(s)	50, 68, 767
BstMBI	GATC	3 cut(s)	136, 519, 702
BstMWI	GCNNNNNNNGC	8 cut(s)	246, 394, 440, 563, 818, 958, 1052, 1064
BstNI	CCWGG	2 cut(s)	512, 891
BstSCI	CCNGG	2 cut(s)	510, 889
BstSFI	CTRYAG	2 cut(s)	438, 618
BstSNI	TACGTA	1 cut(s)	1170
BstUI	CGCG	4 cut(s)	242, 298, 812, 849
BstV1I	GCAGC	8 cut(s)	448, 451, 452, 487, 830, 936, 1067, 1123
BstV2I	GAAGAC	4 cut(s)	183, 207, 887, 1089
BstX2I	RGATCY	2 cut(s)	519, 702
BstYI	RGATCY	2 cut(s)	519, 702
BstZ17I	GTATAC	1 cut(s)	1018
BsuI	GTATCC	1 cut(s)	1150
BsuRI	GGCC	1 cut(s)	992
BtgI	CCRYGG	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	298, 619
BtsIMutI	CAGTG	2 cut(s)	30, 467
BveI	ACCTGC	1 cut(s)	593
Cac8I	GCNNGC	2 cut(s)	247, 298
CaiI	CAGNNNCTG	3 cut(s)	377, 464, 494
CfoI	GCGC	3 cut(s)	242, 298, 300
Cfr13I	GGNCC	2 cut(s)	789, 1117
Csp6I	GTAC	3 cut(s)	664, 729, 1146
CviAII	CATG	6 cut(s)	78, 131, 832, 1087, 1102, 1114
CviQI	GTAC	3 cut(s)	664, 729, 1146
DdeI	CTNAG	7 cut(s)	22, 457, 524, 745, 766, 962, 1161
DpnI	GATC	3 cut(s)	138, 521, 704
DpnII	GATC	3 cut(s)	136, 519, 702
EciI	GGCGGA	1 cut(s)	246
Ecl136II	GAGCTC	3 cut(s)	397, 528, 941
Eco105I	TACGTA	1 cut(s)	1170
Eco130I	CCWWGG	1 cut(s)	130
Eco24I	GRGCYC	3 cut(s)	399, 530, 943
Eco32I	GATATC	1 cut(s)	169
Eco47I	GGWCC	2 cut(s)	789, 1117
Eco53kI	GAGCTC	3 cut(s)	397, 528, 941
Eco57I	CTGAAG	2 cut(s)	738, 945
Eco88I	CYCGRG	2 cut(s)	698, 930
EcoICRI	GAGCTC	3 cut(s)	397, 528, 941
EcoO109I	RGGNCCY	1 cut(s)	789
EcoRII	CCWGG	2 cut(s)	510, 889
EcoRV	GATATC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	130
EcoT38I	GRGCYC	3 cut(s)	399, 530, 943
ErhI	CCWWGG	1 cut(s)	130
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	6 cut(s)	81, 134, 835, 1090, 1105, 1117
FaqI	GGGAC	3 cut(s)	365, 775, 872
FatI	CATG	6 cut(s)	77, 130, 831, 1086, 1101, 1113
FauI	CCCGC	2 cut(s)	238, 393
FblI	GTMKAC	2 cut(s)	1017, 1166
FokI	GGATG	2 cut(s)	305, 626
FriOI	GRGCYC	3 cut(s)	399, 530, 943
FspBI	CTAG	2 cut(s)	953, 1032
GlaI	GCGC	3 cut(s)	241, 297, 299
GsaI	CCCAGC	2 cut(s)	239, 979
GsuI	CTGGAG	2 cut(s)	516, 1025
HaeIII	GGCC	1 cut(s)	992
HapII	CCGG	2 cut(s)	290, 531
HhaI	GCGC	3 cut(s)	242, 298, 300
Hin1II	CATG	6 cut(s)	81, 134, 835, 1090, 1105, 1117
Hin6I	GCGC	3 cut(s)	240, 296, 298
HinP1I	GCGC	3 cut(s)	240, 296, 298
HinfI	GANTC	6 cut(s)	143, 223, 253, 491, 968, 1122
HpaII	CCGG	2 cut(s)	290, 531
Hpy166II	GTNNAC	4 cut(s)	729, 1018, 1148, 1167
Hpy188I	TCNGA	7 cut(s)	173, 185, 338, 718, 748, 840, 1156
Hpy8I	GTNNAC	4 cut(s)	729, 1018, 1148, 1167
HpyAV	CCTTC	6 cut(s)	653, 704, 716, 743, 872, 1161
HpyCH4III	ACNGT	3 cut(s)	61, 778, 910
HpyCH4IV	ACGT	1 cut(s)	1169
HpyF10VI	GCNNNNNNNGC	8 cut(s)	246, 394, 440, 563, 818, 958, 1052, 1064
HpyF3I	CTNAG	7 cut(s)	22, 457, 524, 745, 766, 962, 1161
HpySE526I	ACGT	1 cut(s)	1169
Hsp92II	CATG	6 cut(s)	81, 134, 835, 1090, 1105, 1117
HspAI	GCGC	3 cut(s)	240, 296, 298
KflI	GGGWCCC	1 cut(s)	789
Kpn2I	TCCGGA	2 cut(s)	289, 530
Kzo9I	GATC	3 cut(s)	136, 519, 702
LmnI	GCTCC	8 cut(s)	13, 374, 402, 497, 533, 818, 1043, 1105
Lsp1109I	GCAGC	8 cut(s)	448, 451, 452, 487, 830, 936, 1067, 1123
LweI	GCATC	5 cut(s)	261, 283, 544, 604, 1148
MaeI	CTAG	2 cut(s)	953, 1032
MaeII	ACGT	1 cut(s)	1169
MaeIII	GTNAC	2 cut(s)	559, 1074
MalI	GATC	3 cut(s)	138, 521, 704
MboI	GATC	3 cut(s)	136, 519, 702
MfeI	CAATTG	1 cut(s)	986
MflI	RGATCY	2 cut(s)	519, 702
MhlI	GDGCHC	3 cut(s)	399, 530, 943
MluCI	AATT	3 cut(s)	47, 986, 1011
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	2 cut(s)	735, 796
MroI	TCCGGA	2 cut(s)	289, 530
MroXI	GAANNNNTTC	2 cut(s)	190, 867
MseI	TTAA	6 cut(s)	422, 449, 639, 761, 873, 1092
MspA1I	CMGCKG	5 cut(s)	262, 461, 623, 923, 1058
MspI	CCGG	2 cut(s)	290, 531
MspR9I	CCNGG	2 cut(s)	512, 891
MunI	CAATTG	1 cut(s)	986
Mva1269I	GAATGC	1 cut(s)	659
MvaI	CCWGG	2 cut(s)	512, 891
MvnI	CGCG	4 cut(s)	242, 298, 812, 849
MwoI	GCNNNNNNNGC	8 cut(s)	246, 394, 440, 563, 818, 958, 1052, 1064
NcoI	CCATGG	1 cut(s)	130
NdeII	GATC	3 cut(s)	136, 519, 702
NlaIII	CATG	6 cut(s)	81, 134, 835, 1090, 1105, 1117
NlaIV	GGNNCC	3 cut(s)	83, 790, 791
NmuCI	GTSAC	1 cut(s)	559
PaeR7I	CTCGAG	1 cut(s)	698
PauI	GCGCGC	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	1 cut(s)	659
PdmI	GAANNNNTTC	2 cut(s)	190, 867
PfeI	GAWTC	5 cut(s)	143, 253, 491, 968, 1122
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Ppu21I	YACGTR	1 cut(s)	1170
PpuMI	RGGWCCY	1 cut(s)	789
Psp124BI	GAGCTC	3 cut(s)	399, 530, 943
Psp5II	RGGWCCY	1 cut(s)	789
Psp6I	CCWGG	2 cut(s)	510, 889
PspFI	CCCAGC	2 cut(s)	235, 975
PspGI	CCWGG	2 cut(s)	510, 889
PspN4I	GGNNCC	3 cut(s)	83, 790, 791
PspPI	GGNCC	2 cut(s)	789, 1117
PspPPI	RGGWCCY	1 cut(s)	789
PstI	CTGCAG	1 cut(s)	442
PstNI	CAGNNNCTG	3 cut(s)	377, 464, 494
PsuI	RGATCY	2 cut(s)	519, 702
PteI	GCGCGC	1 cut(s)	296
PvuII	CAGCTG	4 cut(s)	461, 623, 923, 1058
RsaI	GTAC	3 cut(s)	665, 730, 1147
RsaNI	GTAC	3 cut(s)	664, 729, 1146
SacI	GAGCTC	3 cut(s)	399, 530, 943
SaqAI	TTAA	6 cut(s)	422, 449, 639, 761, 873, 1092
Sau3AI	GATC	3 cut(s)	136, 519, 702
Sau96I	GGNCC	2 cut(s)	789, 1117
ScaI	AGTACT	1 cut(s)	665
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	512, 891
SduI	GDGCHC	3 cut(s)	399, 530, 943
SfaNI	GCATC	5 cut(s)	261, 283, 544, 604, 1148
SfcI	CTRYAG	2 cut(s)	438, 618
Sfr274I	CTCGAG	1 cut(s)	698
SinI	GGWCC	2 cut(s)	789, 1117
SlaI	CTCGAG	1 cut(s)	698
SmlI	CTYRAG	2 cut(s)	401, 698
SmoI	CTYRAG	2 cut(s)	401, 698
SnaBI	TACGTA	1 cut(s)	1170
Sse9I	AATT	3 cut(s)	47, 986, 1011
SsiI	CCGC	9 cut(s)	159, 242, 245, 257, 260, 386, 564, 812, 847
SspMI	CTAG	2 cut(s)	953, 1032
SstI	GAGCTC	3 cut(s)	399, 530, 943
StyD4I	CCNGG	2 cut(s)	510, 889
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	3 cut(s)	61, 778, 910
TaiI	ACGT	1 cut(s)	1172
TaqI	TCGA	6 cut(s)	108, 141, 230, 699, 901, 1038
TaqII	GACCGA	1 cut(s)	1134
TasI	AATT	3 cut(s)	47, 986, 1011
TatI	WGTACW	3 cut(s)	663, 728, 1145
TauI	GCSGC	4 cut(s)	161, 245, 262, 849
TfiI	GAWTC	5 cut(s)	143, 253, 491, 968, 1122
Tru1I	TTAA	6 cut(s)	422, 449, 639, 761, 873, 1092
Tru9I	TTAA	6 cut(s)	422, 449, 639, 761, 873, 1092
TscAI	CASTG	2 cut(s)	30, 474
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	8 cut(s)	440, 461, 464, 500, 843, 949, 1055, 1136
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	2 cut(s)	183, 891
TspGWI	ACGGA	2 cut(s)	361, 988
TspRI	CASTG	2 cut(s)	30, 474
VpaK11BI	GGWCC	2 cut(s)	789, 1117
XhoI	CTCGAG	1 cut(s)	698
XmiI	GTMKAC	2 cut(s)	1017, 1166
XmnI	GAANNNNTTC	2 cut(s)	190, 867
XspI	CTAG	2 cut(s)	953, 1032
ZrmI	AGTACT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.