Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008308

Physical Location & Seq

Genomic Coordinates Reverse (-)

20659044 .. 20662303

Gene Structure 3260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G195100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGGACAGGAGGAGCAAAGCTCAGTGGGAGTGGGAGAAGAAGAAGAAGAAACAAGAGAAGTGGTAGAGAAGGAGGAGGTAGAGACATGGAACCAAAGGAAGCAAACCCTTATACTTGAAATCTCCTCAAAGCTCATCCATGGTGATCTGGAGGCCAAGATTGAAGCCGCCAGAGATATCAGAAACTTGGTCAGAAAGTCTTCTTCTTCGTCACCGTCTTCGTCTTCCAAGACCCGGTCAAAGTTGGGCGCGGCTGGTGTGATATCACCTTTGGTGTTGATGCTGTGCTCTCCTAACCCAGATGCACGCCAAGTCTCTCTCCTCGCTCTCCTCAACCTCGCTGTCCGCAATGAACGAAACAAGGTCAAAATTGTGACAGCTGGAGCCGTCCCTCCTCTTGTTGAGCTCCTCAAGTTCCAAAATGGTAGTTTAAGGGATTTAGCCACTGCAGCAATCTTAACACTCTCAGCTGCTGCACTGAACAAGCCAATTATTGCAGATTCTGGAGCTGCACCTCTCCTGGTTGAGATCCTCAGCTCTGGAAGTGTTCAAGGAAAAGTTGATGCTGTGACTGCCCTACACAACCTCTCTACCTGTCAAGAGAACTCAACTGATATTCTGGATGCTACAGCCGTTCCCCCTCTTATCAACCTTCTCAAAGAATGCAAAAAGTATTCCAAGTTTGCCGAAAAAACTACCGCCCTTCTTGAAATCCTATCCAACTCTGAAGAAGGGCGTATTGCAATCTCAAACTCAGATGGTGGGATATTAACCTTAGTAGAAACTGTTGAAGATGGATCTCTTATGAGCACAGAACACGCGGTTGGAGCTTTGCTTTCTATGTGTCAGAGCTGCCGAGATAAATACCGGGAACTCATTCTTAACGAAGGTGCAGTCCCAGGCCTGCTTCGATTGACTGTAGATGGCACAGCTGAAGCTCGGGAGAGAGCTCGTACACTGCTAGATTTGCTTAGAGATTCTCCCCAGCAAAAGCAATTGGCGTCCGCAGTTTTGGAGAGAATTGTATATGACATTGCCACAAGGGTTGATGGAGCTGATAAAGCTGCTGAAACTGCAAAGAGATTACTGCAAGACATGGTTAAAAGAAGCATGGAGCATAGCATGAGCCGCATCCAGCAGAGAGCTGCATCTTGTACACCTTCCAATACGCAGTCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

394

Amino Acids

42.3

Weight (kDa)

5.54

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12710
fragaria_vesca	FvH4_6g40430 FvH4_6g40430 FvH4_6g40430 FvH4_6g40430 FvH4_6g40430
malus_domestica	MD09G1130000.v1.1 MD17G1105200.v1.1
prunus_persica	Prupe.3G195100_v2.0.a1 Prupe.3G195100_v2.0.a1 Prupe.3G195100_v2.0.a1
pyrus_communis	pycom09g05310 pycom17g10920
rosa_chinensis	RchiOBHm_Chr2g0155661
rosa_laevigata	RLG00000020852
rosa_multiflora	Rmu_ssc0000430.1_g000004
rosa_roxburghii	Rroxscaffold_2G00093580
rosa_rugosa	Rorug02G0448900
rosa_samantha	Rh2AG515000 Rh2BG525900 Rh2CG499900 Rh2DG534800
rosa_wichuraiana	Rw2G042320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1175
AccII	CGCG	2 cut(s)	251, 821
AciI	CCGC	7 cut(s)	168, 251, 346, 699, 821, 1005, 1129
AclWI	GGATC	2 cut(s)	523, 805
AcuI	CTGAAG	2 cut(s)	747, 954
AcyI	GRCGYC	1 cut(s)	1001
AfaI	GTAC	2 cut(s)	955, 1156
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	5 cut(s)	119, 164, 551, 710, 791
AjnI	CCWGG	2 cut(s)	519, 898
AjuI	GAANNNNNNNTTGG	2 cut(s)	807, 839
Alw21I	GWGCWC	4 cut(s)	290, 408, 812, 952
Alw26I	GTCTC	2 cut(s)	77, 319
AlwI	GGATC	2 cut(s)	523, 805
AlwNI	CAGNNNCTG	2 cut(s)	473, 503
Ama87I	CYCGRG	1 cut(s)	939
AoxI	GGCC	2 cut(s)	153, 901
ApeKI	GCWGC	7 cut(s)	449, 470, 473, 509, 852, 1064, 1145
ArsI	GACNNNNNNTTYG	2 cut(s)	879, 911
Asp700I	GAANNNNTTC	2 cut(s)	199, 876
AspLEI	GCGC	1 cut(s)	251
AsuC2I	CCSGG	2 cut(s)	235, 869
AsuHPI	GGTGA	3 cut(s)	155, 204, 258
AvaI	CYCGRG	1 cut(s)	939
BanII	GRGCYC	2 cut(s)	408, 952
BbsI	GAAGAC	3 cut(s)	192, 210, 216
Bbv12I	GWGCWC	4 cut(s)	290, 408, 812, 952
BbvCI	CCTCAGC	1 cut(s)	533
BbvI	GCAGC	7 cut(s)	457, 460, 461, 496, 839, 1051, 1132
BccI	CCATC	4 cut(s)	752, 788, 917, 1043
BceAI	ACGGC	2 cut(s)	371, 617
BciT130I	CCWGG	2 cut(s)	521, 900
BcnI	CCSGG	2 cut(s)	235, 869
BcoDI	GTCTC	2 cut(s)	77, 319
BfaI	CTAG	1 cut(s)	962
BfmI	CTRYAG	3 cut(s)	447, 627, 918
Bme1390I	CCNGG	4 cut(s)	235, 521, 869, 900
BmeT110I	CYCGRG	1 cut(s)	939
BmiI	GGNNCC	2 cut(s)	92, 385
BmrFI	CCNGG	4 cut(s)	235, 521, 869, 900
BmsI	GCATC	6 cut(s)	270, 292, 553, 613, 1140, 1157
BpiI	GAAGAC	3 cut(s)	192, 210, 216
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	3 cut(s)	170, 402, 525
Bpu10I	CCTNAGC	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	395
BpuMI	CCSGG	2 cut(s)	235, 869
BsaHI	GRCGYC	1 cut(s)	1001
BsaJI	CCNNGG	2 cut(s)	139, 898
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse3DI	GCAATG	2 cut(s)	355, 1032
BseBI	CCWGG	2 cut(s)	521, 900
BseDI	CCNNGG	2 cut(s)	139, 898
BseGI	GGATG	3 cut(s)	135, 628, 1131
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	2 cut(s)	355, 1032
BseMII	CTCAG	4 cut(s)	36, 480, 547, 768
BseRI	GAGGAG	7 cut(s)	26, 89, 115, 311, 320, 384, 398
BseXI	GCAGC	7 cut(s)	457, 460, 461, 496, 839, 1051, 1132
BseYI	CCCAGC	1 cut(s)	984
BsgI	GTGCAG	3 cut(s)	459, 495, 912
Bsh1236I	CGCG	2 cut(s)	251, 821
BshFI	GGCC	2 cut(s)	155, 903
BsiHKAI	GWGCWC	4 cut(s)	290, 408, 812, 952
BsiHKCI	CYCGRG	1 cut(s)	939
BsiSI	CCGG	2 cut(s)	235, 868
BslFI	GGGAC	3 cut(s)	18, 374, 881
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	2 cut(s)	77, 319
BsmFI	GGGAC	3 cut(s)	18, 374, 881
BsmI	GAATGC	1 cut(s)	668
BsnI	GGCC	2 cut(s)	155, 903
BsoBI	CYCGRG	1 cut(s)	939
Bsp1286I	GDGCHC	4 cut(s)	290, 408, 812, 952
Bsp1407I	TGTACA	1 cut(s)	1154
Bsp143I	GATC	3 cut(s)	145, 528, 797
Bsp19I	CCATGG	1 cut(s)	139
BspACI	CCGC	7 cut(s)	168, 251, 346, 699, 821, 1005, 1129
BspANI	GGCC	2 cut(s)	155, 903
BspCNI	CTCAG	4 cut(s)	35, 479, 546, 767
BspFNI	CGCG	2 cut(s)	251, 821
BspLI	GGNNCC	2 cut(s)	92, 385
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	2 cut(s)	523, 805
BsrDI	GCAATG	2 cut(s)	355, 1032
BsrGI	TGTACA	1 cut(s)	1154
BssECI	CCNNGG	2 cut(s)	139, 898
BssMI	GATC	3 cut(s)	145, 528, 797
BssNI	GRCGYC	1 cut(s)	1001
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	521, 900
Bst4CI	ACNGT	3 cut(s)	216, 787, 919
BstACI	GRCGYC	1 cut(s)	1001
BstAUI	TGTACA	1 cut(s)	1154
BstC8I	GCNNGC	2 cut(s)	307, 905
BstDEI	CTNAG	6 cut(s)	22, 466, 533, 754, 775, 971
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	3 cut(s)	135, 628, 1131
BstFNI	CGCG	2 cut(s)	251, 821
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	3 cut(s)	148, 531, 800
BstMAI	GTCTC	2 cut(s)	77, 319
BstMBI	GATC	3 cut(s)	145, 528, 797
BstMWI	GCNNNNNNNGC	7 cut(s)	449, 572, 827, 967, 1061, 1073, 1128
BstNI	CCWGG	2 cut(s)	521, 900
BstSCI	CCNGG	4 cut(s)	233, 519, 867, 898
BstSFI	CTRYAG	3 cut(s)	447, 627, 918
BstUI	CGCG	2 cut(s)	251, 821
BstV1I	GCAGC	7 cut(s)	457, 460, 461, 496, 839, 1051, 1132
BstV2I	GAAGAC	3 cut(s)	192, 210, 216
BstX2I	RGATCY	2 cut(s)	528, 797
BstYI	RGATCY	2 cut(s)	528, 797
BsuRI	GGCC	2 cut(s)	155, 903
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	3 cut(s)	135, 628, 1131
BtsI	GCAGTG	2 cut(s)	444, 956
BtsIMutI	CAGTG	4 cut(s)	30, 444, 476, 956
Cac8I	GCNNGC	2 cut(s)	307, 905
CaiI	CAGNNNCTG	2 cut(s)	473, 503
CfoI	GCGC	1 cut(s)	251
CseI	GACGC	1 cut(s)	990
Csp6I	GTAC	2 cut(s)	954, 1155
CspCI	CAANNNNNGTGG	4 cut(s)	42, 77, 1027, 1062
CviAII	CATG	5 cut(s)	87, 140, 1096, 1111, 1123
CviQI	GTAC	2 cut(s)	954, 1155
DdeI	CTNAG	6 cut(s)	22, 466, 533, 754, 775, 971
DpnI	GATC	3 cut(s)	147, 530, 799
DpnII	GATC	3 cut(s)	145, 528, 797
Ecl136II	GAGCTC	2 cut(s)	406, 950
Eco130I	CCWWGG	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	903
Eco24I	GRGCYC	2 cut(s)	408, 952
Eco32I	GATATC	2 cut(s)	178, 264
Eco53kI	GAGCTC	2 cut(s)	406, 950
Eco57I	CTGAAG	2 cut(s)	747, 954
Eco88I	CYCGRG	1 cut(s)	939
EcoICRI	GAGCTC	2 cut(s)	406, 950
EcoRII	CCWGG	2 cut(s)	519, 898
EcoRV	GATATC	2 cut(s)	178, 264
EcoT14I	CCWWGG	1 cut(s)	139
EcoT38I	GRGCYC	2 cut(s)	408, 952
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	5 cut(s)	90, 143, 1099, 1114, 1126
FaqI	GGGAC	3 cut(s)	18, 374, 881
FatI	CATG	5 cut(s)	86, 139, 1095, 1110, 1122
FblI	GTMKAC	1 cut(s)	1175
FokI	GGATG	3 cut(s)	122, 635, 1118
FriOI	GRGCYC	2 cut(s)	408, 952
FspBI	CTAG	1 cut(s)	962
GlaI	GCGC	1 cut(s)	250
GsaI	CCCAGC	1 cut(s)	988
GsuI	CTGGAG	3 cut(s)	170, 402, 525
HaeIII	GGCC	2 cut(s)	155, 903
HapII	CCGG	2 cut(s)	235, 868
HgaI	GACGC	1 cut(s)	990
HhaI	GCGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	1001
Hin1II	CATG	5 cut(s)	90, 143, 1099, 1114, 1126
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HinfI	GANTC	2 cut(s)	500, 977
HpaII	CCGG	2 cut(s)	235, 868
HphI	GGTGA	3 cut(s)	155, 204, 258
Hpy166II	GTNNAC	3 cut(s)	956, 1157, 1176
Hpy188I	TCNGA	5 cut(s)	182, 194, 727, 757, 849
Hpy188III	TCNNGA	7 cut(s)	149, 504, 540, 599, 620, 707, 941
Hpy8I	GTNNAC	3 cut(s)	956, 1157, 1176
HpyAV	CCTTC	6 cut(s)	64, 662, 713, 725, 881, 1170
HpyCH4III	ACNGT	3 cut(s)	216, 787, 919
HpyF10VI	GCNNNNNNNGC	7 cut(s)	449, 572, 827, 967, 1061, 1073, 1128
HpyF3I	CTNAG	6 cut(s)	22, 466, 533, 754, 775, 971
Hsp92I	GRCGYC	1 cut(s)	1001
Hsp92II	CATG	5 cut(s)	90, 143, 1099, 1114, 1126
HspAI	GCGC	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	145, 528, 797
LmnI	GCTCC	7 cut(s)	13, 383, 411, 506, 827, 1052, 1114
Lsp1109I	GCAGC	7 cut(s)	457, 460, 461, 496, 839, 1051, 1132
LweI	GCATC	6 cut(s)	270, 292, 553, 613, 1140, 1157
MaeI	CTAG	1 cut(s)	962
MaeIII	GTNAC	3 cut(s)	210, 373, 568
MalI	GATC	3 cut(s)	147, 530, 799
MboI	GATC	3 cut(s)	145, 528, 797
MfeI	CAATTG	1 cut(s)	995
MflI	RGATCY	2 cut(s)	528, 797
MhlI	GDGCHC	4 cut(s)	290, 408, 812, 952
MluCI	AATT	4 cut(s)	369, 489, 995, 1020
MmeI	TCCRAC	2 cut(s)	744, 805
MroXI	GAANNNNTTC	2 cut(s)	199, 876
MseI	TTAA	5 cut(s)	431, 458, 770, 882, 1101
MspA1I	CMGCKG	3 cut(s)	380, 470, 932
MspI	CCGG	2 cut(s)	235, 868
MspR9I	CCNGG	4 cut(s)	235, 521, 869, 900
MunI	CAATTG	1 cut(s)	995
Mva1269I	GAATGC	1 cut(s)	668
MvaI	CCWGG	2 cut(s)	521, 900
MvnI	CGCG	2 cut(s)	251, 821
MwoI	GCNNNNNNNGC	7 cut(s)	449, 572, 827, 967, 1061, 1073, 1128
NciI	CCSGG	2 cut(s)	235, 869
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	3 cut(s)	145, 528, 797
NlaIII	CATG	5 cut(s)	90, 143, 1099, 1114, 1126
NlaIV	GGNNCC	2 cut(s)	92, 385
NmeAIII	GCCGAG	1 cut(s)	881
NmuCI	GTSAC	3 cut(s)	210, 373, 568
PceI	AGGCCT	1 cut(s)	903
PctI	GAATGC	1 cut(s)	668
PdmI	GAANNNNTTC	2 cut(s)	199, 876
PfeI	GAWTC	2 cut(s)	500, 977
PflFI	GACNNNGTC	1 cut(s)	235
Psp124BI	GAGCTC	2 cut(s)	408, 952
Psp6I	CCWGG	2 cut(s)	519, 898
PspFI	CCCAGC	1 cut(s)	984
PspGI	CCWGG	2 cut(s)	519, 898
PspN4I	GGNNCC	2 cut(s)	92, 385
PstI	CTGCAG	1 cut(s)	451
PstNI	CAGNNNCTG	2 cut(s)	473, 503
PsuI	RGATCY	2 cut(s)	528, 797
PsyI	GACNNNGTC	1 cut(s)	235
PvuII	CAGCTG	3 cut(s)	380, 470, 932
RsaI	GTAC	2 cut(s)	955, 1156
RsaNI	GTAC	2 cut(s)	954, 1155
SacI	GAGCTC	2 cut(s)	408, 952
SaqAI	TTAA	5 cut(s)	431, 458, 770, 882, 1101
Sau3AI	GATC	3 cut(s)	145, 528, 797
ScrFI	CCNGG	4 cut(s)	235, 521, 869, 900
SduI	GDGCHC	4 cut(s)	290, 408, 812, 952
SfaNI	GCATC	6 cut(s)	270, 292, 553, 613, 1140, 1157
SfcI	CTRYAG	3 cut(s)	447, 627, 918
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	4 cut(s)	369, 489, 995, 1020
SseBI	AGGCCT	1 cut(s)	903
SsiI	CCGC	7 cut(s)	168, 251, 346, 699, 821, 1005, 1129
SspMI	CTAG	1 cut(s)	962
SstI	GAGCTC	2 cut(s)	408, 952
StuI	AGGCCT	1 cut(s)	903
StyD4I	CCNGG	4 cut(s)	233, 519, 867, 898
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	3 cut(s)	216, 787, 919
TaqI	TCGA	1 cut(s)	910
TasI	AATT	4 cut(s)	369, 489, 995, 1020
TatI	WGTACW	1 cut(s)	1154
TauI	GCSGC	3 cut(s)	170, 254, 1131
TfiI	GAWTC	2 cut(s)	500, 977
Tru1I	TTAA	5 cut(s)	431, 458, 770, 882, 1101
Tru9I	TTAA	5 cut(s)	431, 458, 770, 882, 1101
TscAI	CASTG	4 cut(s)	30, 451, 483, 963
TseFI	GTSAC	3 cut(s)	210, 373, 568
TseI	GCWGC	7 cut(s)	449, 470, 473, 509, 852, 1064, 1145
Tsp45I	GTSAC	3 cut(s)	210, 373, 568
TspDTI	ATGAA	1 cut(s)	366
TspRI	CASTG	4 cut(s)	30, 451, 483, 963
Tth111I	GACNNNGTC	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	1175
XmnI	GAANNNNTTC	2 cut(s)	199, 876
XspI	CTAG	1 cut(s)	962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.