Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008308

Physical Location & Seq

Genomic Coordinates Reverse (-)

31960765 .. 31963453

Gene Structure 2689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40430.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGGCAAGAGGAGCAGAGCACAGTGGTTGTGGAGGAAGAAGAAGAAGGAGAAGAAAGACATGAAATTTCAGAGTCATGGAGCCAAAGGAAGCAAACCCTAGTCCTAGAAATCTCATCCAAGCTCATCAACGGTGATCTTGACGCCAAAATTGAAGCCGCCAGAGACATCAGAAACTTGGTCAGAAAGTCTTCCTCCTCCTCTTCTTCTTCTTCGGCCAAGACTCGATTAAAGTTGGGAGCTTCAGGTGTGATTCCACCTCTGGTGACGATGCTGGTGTCTCCTAACCCAGATGCTCGCCAGGCTTCTCTTCTGGCCCTTCTCAACCTCGCTGTTCGCAATGATAGAAACAAGGTCAAGATTGTGACAGCTGGAGCTGTTCCTCCTCTTGTTGAGCTCCTCAAGTTCCAAAATGGTAGCTTAAGGGATTTAGCGACTGCAGCAATCTTAACACTCTCGGCTGCTGCATTGAACAAGCCGATTATTGCGGCTTCTGGAGCTGCACCGCTCCTTGTTCAGATCCTCAGCACTGGAAGTGTTCAAGGAAAAGTTGATGCCGTGACTGCCCTTCACAATCTCTCGACCTGCAAAGACAACACAGCTGCAATTCTTGATGCTAAAGCTGTTCCTCCTCTTATAAACCTCCTCAAAGAATGCAAAAAATATTCCAAGTTTGCGGAAAAAACTACAGCCCTTCTTGAAATCCTATCCAACTCAGAAGAAGGGCGTGTTGCAATCTCAGACATGCCGGGTGGGATCTTAACCTTAGTAGAGACTGTTGAAGATGGATCCCTTGTCAGCACAGAACACGCTGTCGGAGCTTTGCTGACTTTATGTCAGAGCTGTCGAGATATATACCGGGAACTCATTCTTAAAGAAGGTGCAGTCCCGGGCCTTCTGCGCTTGACTGTAGATGGCACAGCTGAAGCTCGGGAGAAAGCTCGTAGGCTGCTGGATTTGCTTAGAGATTCTCCCCAAGAAAAGCAGTTGGCATCCTCAGTTCTGGAGAGAATCGTATACGACATTGCCACGAGGGTCGATGGAGCTGATAAAGCTGCTGAAACCGCTAAGAGATTACTGGAAGACATGGTTAAACGAAGCATGGAGCACAGCATGAGCCGCATACAGCAGAGAGCTGCATCTTGTACCCCTAATATTCAGTCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

390

Amino Acids

41.78

Weight (kDa)

6.21

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	15 - 182	2.3e-09	ARMC5
ARM_PUB	PF25598	17 - 231	1.7e-19	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12710
fragaria_vesca	FvH4_6g40430 FvH4_6g40430 FvH4_6g40430 FvH4_6g40430 FvH4_6g40430
malus_domestica	MD09G1130000.v1.1 MD17G1105200.v1.1
prunus_persica	Prupe.3G195100_v2.0.a1 Prupe.3G195100_v2.0.a1 Prupe.3G195100_v2.0.a1
pyrus_communis	pycom09g05310 pycom17g10920
rosa_chinensis	RchiOBHm_Chr2g0155661
rosa_laevigata	RLG00000020852
rosa_multiflora	Rmu_ssc0000430.1_g000004
rosa_roxburghii	Rroxscaffold_2G00093580
rosa_rugosa	Rorug02G0448900
rosa_samantha	Rh2AG515000 Rh2BG525900 Rh2CG499900 Rh2DG534800
rosa_wichuraiana	Rw2G042320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	638
Acc36I	ACCTGC	1 cut(s)	593
AccBSI	CCGCTC	1 cut(s)	508
AccI	GTMKAC	2 cut(s)	1017, 1163
AciI	CCGC	6 cut(s)	159, 488, 506, 677, 1065, 1120
AclWI	GGATC	4 cut(s)	514, 764, 783, 796
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	66
AcuI	CTGAAG	2 cut(s)	228, 945
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	1147
AflII	CTTAAG	1 cut(s)	421
AgsI	TTSAA	5 cut(s)	155, 472, 542, 701, 782
AhdI	GACNNNNNGTC	1 cut(s)	834
AjnI	CCWGG	1 cut(s)	300
Alw21I	GWGCWC	3 cut(s)	23, 399, 1110
Alw26I	GTCTC	3 cut(s)	159, 285, 767
AlwI	GGATC	4 cut(s)	514, 764, 783, 796
Ama87I	CYCGRG	2 cut(s)	889, 930
AoxI	GGCC	3 cut(s)	216, 315, 892
ApeKI	GCWGC	8 cut(s)	440, 461, 464, 500, 602, 949, 1055, 1136
ApoI	RAATTY	1 cut(s)	66
Asp700I	GAANNNNTTC	2 cut(s)	190, 867
AspLEI	GCGC	1 cut(s)	903
AspS9I	GGNCC	2 cut(s)	316, 892
AsuC2I	CCSGG	4 cut(s)	750, 860, 890, 891
AsuHPI	GGTGA	2 cut(s)	146, 277
AvaI	CYCGRG	2 cut(s)	889, 930
BamHI	GGATCC	1 cut(s)	788
BanII	GRGCYC	1 cut(s)	399
BauI	CACGAG	1 cut(s)	1030
BbsI	GAAGAC	2 cut(s)	183, 1089
Bbv12I	GWGCWC	3 cut(s)	23, 399, 1110
BbvCI	CCTCAGC	1 cut(s)	524
BbvI	GCAGC	8 cut(s)	448, 451, 452, 487, 589, 936, 1042, 1123
BccI	CCATC	3 cut(s)	779, 908, 1034
BceAI	ACGGC	1 cut(s)	542
BciT130I	CCWGG	1 cut(s)	302
BcnI	CCSGG	4 cut(s)	750, 860, 890, 891
BcoDI	GTCTC	3 cut(s)	159, 285, 767
BfaI	CTAG	2 cut(s)	101, 107
BfmI	CTRYAG	3 cut(s)	438, 687, 909
BfrI	CTTAAG	1 cut(s)	421
BfuAI	ACCTGC	1 cut(s)	593
Bme1390I	CCNGG	5 cut(s)	302, 750, 860, 890, 891
BmeRI	GACNNNNNGTC	1 cut(s)	834
BmeT110I	CYCGRG	2 cut(s)	889, 930
BmgT120I	GGNCC	2 cut(s)	316, 892
BmiI	GGNNCC	2 cut(s)	83, 790
BmrFI	CCNGG	5 cut(s)	302, 750, 860, 890, 891
BmsI	GCATC	6 cut(s)	261, 283, 544, 604, 1001, 1148
BpiI	GAAGAC	2 cut(s)	183, 1089
BpmI	CTGGAG	3 cut(s)	393, 516, 1025
Bpu10I	CCTNAGC	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	386
BpuMI	CCSGG	4 cut(s)	750, 860, 890, 891
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	889
Bse1I	ACTGG	2 cut(s)	535, 1083
Bse3DI	GCAATG	2 cut(s)	346, 1023
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	889
BseGI	GGATG	2 cut(s)	116, 992
BseMI	GCAATG	2 cut(s)	346, 1023
BseMII	CTCAG	4 cut(s)	538, 729, 753, 1011
BseNI	ACTGG	2 cut(s)	535, 1083
BseRI	GAGGAG	7 cut(s)	26, 187, 190, 375, 389, 621, 635
BseXI	GCAGC	8 cut(s)	448, 451, 452, 487, 589, 936, 1042, 1123
BsgI	GTGCAG	2 cut(s)	486, 903
BshFI	GGCC	3 cut(s)	218, 317, 894
BsiHKAI	GWGCWC	3 cut(s)	23, 399, 1110
BsiHKCI	CYCGRG	2 cut(s)	889, 930
BsiSI	CCGG	3 cut(s)	749, 859, 890
BslFI	GGGAC	1 cut(s)	872
BsmAI	GTCTC	3 cut(s)	159, 285, 767
BsmFI	GGGAC	1 cut(s)	872
BsmI	GAATGC	1 cut(s)	659
BsnI	GGCC	3 cut(s)	218, 317, 894
BsoBI	CYCGRG	2 cut(s)	889, 930
Bsp1286I	GDGCHC	3 cut(s)	23, 399, 1110
Bsp143I	GATC	4 cut(s)	136, 519, 756, 788
BspACI	CCGC	6 cut(s)	159, 488, 506, 677, 1065, 1120
BspANI	GGCC	3 cut(s)	218, 317, 894
BspCNI	CTCAG	4 cut(s)	537, 728, 752, 1010
BspLI	GGNNCC	2 cut(s)	83, 790
BspMAI	CTGCAG	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	593
BspPI	GGATC	4 cut(s)	514, 764, 783, 796
BspTI	CTTAAG	1 cut(s)	421
BsrBI	CCGCTC	1 cut(s)	508
BsrDI	GCAATG	2 cut(s)	346, 1023
BsrI	ACTGG	2 cut(s)	535, 1083
BssECI	CCNNGG	1 cut(s)	889
BssMI	GATC	4 cut(s)	136, 519, 756, 788
BssNAI	GTATAC	1 cut(s)	1018
BssNI	GRCGYC	1 cut(s)	144
BssSI	CACGAG	1 cut(s)	1030
Bst1107I	GTATAC	1 cut(s)	1018
Bst2BI	CACGAG	1 cut(s)	1030
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	4 cut(s)	25, 134, 778, 910
Bst6I	CTCTTC	2 cut(s)	208, 315
BstACI	GRCGYC	1 cut(s)	144
BstAFI	CTTAAG	1 cut(s)	421
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	7 cut(s)	524, 715, 739, 766, 962, 997, 1068
BstF5I	GGATG	2 cut(s)	116, 992
BstHHI	GCGC	1 cut(s)	903
BstKTI	GATC	4 cut(s)	139, 522, 759, 791
BstMAI	GTCTC	3 cut(s)	159, 285, 767
BstMBI	GATC	4 cut(s)	136, 519, 756, 788
BstNI	CCWGG	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	748
BstSCI	CCNGG	5 cut(s)	300, 748, 858, 888, 889
BstSFI	CTRYAG	3 cut(s)	438, 687, 909
BstV1I	GCAGC	8 cut(s)	448, 451, 452, 487, 589, 936, 1042, 1123
BstV2I	GAAGAC	2 cut(s)	183, 1089
BstX2I	RGATCY	3 cut(s)	519, 756, 788
BstYI	RGATCY	3 cut(s)	519, 756, 788
BstZ17I	GTATAC	1 cut(s)	1018
BsuRI	GGCC	3 cut(s)	218, 317, 894
BtsCI	GGATG	2 cut(s)	116, 992
BtsIMutI	CAGTG	2 cut(s)	30, 528
BveI	ACCTGC	1 cut(s)	593
Cac8I	GCNNGC	1 cut(s)	298
CfoI	GCGC	1 cut(s)	903
Cfr13I	GGNCC	2 cut(s)	316, 892
Cfr9I	CCCGGG	1 cut(s)	889
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	1146
CviAII	CATG	7 cut(s)	62, 78, 745, 1087, 1102, 1114, 1167
CviQI	GTAC	1 cut(s)	1146
DdeI	CTNAG	7 cut(s)	524, 715, 739, 766, 962, 997, 1068
DpnI	GATC	4 cut(s)	138, 521, 758, 790
DpnII	GATC	4 cut(s)	136, 519, 756, 788
DriI	GACNNNNNGTC	1 cut(s)	834
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	208, 315
Eam1105I	GACNNNNNGTC	1 cut(s)	834
EarI	CTCTTC	2 cut(s)	208, 315
Ecl136II	GAGCTC	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	399
Eco53kI	GAGCTC	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	228, 945
Eco88I	CYCGRG	2 cut(s)	889, 930
EcoICRI	GAGCTC	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	399
FaeI	CATG	7 cut(s)	65, 81, 748, 1090, 1105, 1117, 1170
FaqI	GGGAC	1 cut(s)	872
FatI	CATG	7 cut(s)	61, 77, 744, 1086, 1101, 1113, 1166
FblI	GTMKAC	2 cut(s)	1017, 1163
FokI	GGATG	2 cut(s)	103, 979
FriOI	GRGCYC	1 cut(s)	399
FspBI	CTAG	2 cut(s)	101, 107
GlaI	GCGC	1 cut(s)	902
GsuI	CTGGAG	3 cut(s)	393, 516, 1025
HaeIII	GGCC	3 cut(s)	218, 317, 894
HapII	CCGG	3 cut(s)	749, 859, 890
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	903
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	7 cut(s)	65, 81, 748, 1090, 1105, 1117, 1170
Hin6I	GCGC	1 cut(s)	901
HinP1I	GCGC	1 cut(s)	901
HinfI	GANTC	5 cut(s)	74, 223, 253, 968, 1011
HpaII	CCGG	3 cut(s)	749, 859, 890
HphI	GGTGA	2 cut(s)	146, 277
Hpy166II	GTNNAC	2 cut(s)	1018, 1164
Hpy188I	TCNGA	8 cut(s)	73, 173, 185, 519, 718, 742, 818, 840
Hpy188III	TCNNGA	9 cut(s)	140, 358, 495, 580, 611, 698, 848, 932, 1004
Hpy8I	GTNNAC	2 cut(s)	1018, 1164
HpyAV	CCTTC	7 cut(s)	41, 329, 578, 704, 716, 872, 905
HpyCH4III	ACNGT	4 cut(s)	25, 134, 778, 910
HpyCH4V	TGCA	9 cut(s)	440, 467, 503, 588, 605, 657, 734, 884, 1139
HpyF3I	CTNAG	7 cut(s)	524, 715, 739, 766, 962, 997, 1068
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	7 cut(s)	65, 81, 748, 1090, 1105, 1117, 1170
HspAI	GCGC	1 cut(s)	901
Kzo9I	GATC	4 cut(s)	136, 519, 756, 788
Lsp1109I	GCAGC	8 cut(s)	448, 451, 452, 487, 589, 936, 1042, 1123
LweI	GCATC	6 cut(s)	261, 283, 544, 604, 1001, 1148
MaeI	CTAG	2 cut(s)	101, 107
MaeIII	GTNAC	3 cut(s)	265, 364, 559
MalI	GATC	4 cut(s)	138, 521, 758, 790
MbiI	CCGCTC	1 cut(s)	508
MboI	GATC	4 cut(s)	136, 519, 756, 788
MflI	RGATCY	3 cut(s)	519, 756, 788
MhlI	GDGCHC	3 cut(s)	23, 399, 1110
MluCI	AATT	3 cut(s)	66, 150, 606
MlyI	GAGTC	2 cut(s)	83, 217
MmeI	TCCRAC	2 cut(s)	735, 796
MroXI	GAANNNNTTC	2 cut(s)	190, 867
MseI	TTAA	6 cut(s)	230, 422, 449, 761, 873, 1092
MspA1I	CMGCKG	3 cut(s)	371, 602, 923
MspCI	CTTAAG	1 cut(s)	421
MspI	CCGG	3 cut(s)	749, 859, 890
MspR9I	CCNGG	5 cut(s)	302, 750, 860, 890, 891
Mva1269I	GAATGC	1 cut(s)	659
MvaI	CCWGG	1 cut(s)	302
NciI	CCSGG	4 cut(s)	750, 860, 890, 891
NdeII	GATC	4 cut(s)	136, 519, 756, 788
NlaIII	CATG	7 cut(s)	65, 81, 748, 1090, 1105, 1117, 1170
NlaIV	GGNNCC	2 cut(s)	83, 790
NmeAIII	GCCGAG	1 cut(s)	437
NmuCI	GTSAC	3 cut(s)	265, 364, 559
NspI	RCATGY	1 cut(s)	748
PctI	GAATGC	1 cut(s)	659
PdmI	GAANNNNTTC	2 cut(s)	190, 867
PfeI	GAWTC	3 cut(s)	253, 968, 1011
PleI	GAGTC	2 cut(s)	82, 217
PpsI	GAGTC	2 cut(s)	82, 217
PsiI	TTATAA	1 cut(s)	638
Psp124BI	GAGCTC	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	83, 790
PspPI	GGNCC	2 cut(s)	316, 892
PstI	CTGCAG	1 cut(s)	442
PsuI	RGATCY	3 cut(s)	519, 756, 788
PvuII	CAGCTG	3 cut(s)	371, 602, 923
RsaI	GTAC	1 cut(s)	1147
RsaNI	GTAC	1 cut(s)	1146
SacI	GAGCTC	1 cut(s)	399
SaqAI	TTAA	6 cut(s)	230, 422, 449, 761, 873, 1092
Sau3AI	GATC	4 cut(s)	136, 519, 756, 788
Sau96I	GGNCC	2 cut(s)	316, 892
SchI	GAGTC	2 cut(s)	83, 217
ScrFI	CCNGG	5 cut(s)	302, 750, 860, 890, 891
SduI	GDGCHC	3 cut(s)	23, 399, 1110
SfaNI	GCATC	6 cut(s)	261, 283, 544, 604, 1001, 1148
SfcI	CTRYAG	3 cut(s)	438, 687, 909
SmaI	CCCGGG	1 cut(s)	891
SmlI	CTYRAG	2 cut(s)	401, 421
SmoI	CTYRAG	2 cut(s)	401, 421
Sse9I	AATT	3 cut(s)	66, 150, 606
SsiI	CCGC	6 cut(s)	159, 488, 506, 677, 1065, 1120
SspI	AATATT	2 cut(s)	665, 1156
SspMI	CTAG	2 cut(s)	101, 107
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	5 cut(s)	300, 748, 858, 888, 889
TaaI	ACNGT	4 cut(s)	25, 134, 778, 910
TaqI	TCGA	4 cut(s)	226, 581, 847, 1038
TasI	AATT	3 cut(s)	66, 150, 606
TauI	GCSGC	3 cut(s)	161, 491, 1122
TfiI	GAWTC	3 cut(s)	253, 968, 1011
Tru1I	TTAA	6 cut(s)	230, 422, 449, 761, 873, 1092
Tru9I	TTAA	6 cut(s)	230, 422, 449, 761, 873, 1092
TscAI	CASTG	2 cut(s)	30, 535
TseFI	GTSAC	3 cut(s)	265, 364, 559
TseI	GCWGC	8 cut(s)	440, 461, 464, 500, 602, 949, 1055, 1136
Tsp45I	GTSAC	3 cut(s)	265, 364, 559
TspDTI	ATGAA	1 cut(s)	78
TspMI	CCCGGG	1 cut(s)	889
TspRI	CASTG	2 cut(s)	30, 535
Vha464I	CTTAAG	1 cut(s)	421
XapI	RAATTY	1 cut(s)	66
XceI	RCATGY	1 cut(s)	748
XmaI	CCCGGG	1 cut(s)	889
XmiI	GTMKAC	2 cut(s)	1017, 1163
XmnI	GAANNNNTTC	2 cut(s)	190, 867
XspI	CTAG	2 cut(s)	101, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.