Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008308

Physical Location & Seq

Genomic Coordinates Forward (+)

14929926 .. 14932613

Gene Structure 2688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00093580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGGGCAAGAGGAGCAGAGCACTGTAGGTGTGGAAGAAGAAGAAGAAGAAGAAAGACATGAAATTTCAGAGTCATGGAGCCAAAGGAAGCAAACCCTAATACTCGAAATCTCATCCAAGCTCATCAATGGTGATCTTGAGGCCAAAATTGAAGCCGCCAGAGACATCAGAAACTTGGTCAGGAAGTCTTCTTCTTCCTCCTCCTCCTCTTCTTCTTCTGCGGCCAAGACTCGATTAAAGTTGGGAGCTTCAGGTGTGATTCCACCTTTGGTGACTATGCTGGTCTCTCCTAACCCAGATGCTCGCCAAGCTTCTCTTCTAGCTCTTCTCAACCTCGCTGTTCGCAATGACCGAAACAAAGTCAAGATTGTGACAGCTGGAGCTGTTCCTCCTCTTGTTGAGCTCCTCAAGTTCCAAAATGGTAGTTTAAGGGATTTAGCCACTGCAGCAATCTTAACACTGTCAGCTGTTGCATTGAACAAGCCGATTATTGCGGCTTCTGGAGCTGCACCGCTCCTTGTTCAGATCCTCAGCTCCGGAAGTGTTCAAGGAAAGGTTGATGCCGTGACTGCCCTACACAACCTCTCTACCTGCAAAGACAATGCGACTCCAATTCTTGATGCTACAGCTGTTTCTCCTCTTATAAATCTCCTCAAAGAATGCAAAAAGTATTCCAAGTTTGCTGAAAAAACTTCTGCCCTTCTCGAAATCCTATCCAACTCAGAAGAAGGGCGTGTTGCAATCTCAAATGTAGAGGGTGGGATCTTAACATTAGTAGAGACTATTGAAGATGGATCCCTTGTCAGCACAGAACATGCTGTTGGAGCTTTGCTCACTCTATGTCAGAGCTGTCGAGATAAATACCGGGAACTCATTCTTAAAGAAGGTGCAGTCCCGGGCCTTTTGCGGTTGACTGTAGATGGCACAGCTGAAGCTCGGGAGAAAGCTCGTGTACTTCTGGATTTGCTTAGAGATTCTCCCCAGGAAAAGCATTTGGCGTCGTCAGTTCTGGAGAGAATTGTATACGACATTGCCACGAGGGTCGATGGAGCTGATAAAGCTGCTGAAACTGCAAAGAGGTTACTGGAAGACATGGTTAAACGAAGCATGGAGCACAGCATGAGCCGCATACAGCAGAGAGCTGCGTCTTGTACACCTTCTAATATTCAGTCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

392

Amino Acids

42.01

Weight (kDa)

6.08

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	160 - 310	3.1e-08	ARMC5
ARM_PUB	PF25598	173 - 332	4.4e-17	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12710
fragaria_vesca	FvH4_6g40430 FvH4_6g40430 FvH4_6g40430 FvH4_6g40430 FvH4_6g40430
malus_domestica	MD09G1130000.v1.1 MD17G1105200.v1.1
prunus_persica	Prupe.3G195100_v2.0.a1 Prupe.3G195100_v2.0.a1 Prupe.3G195100_v2.0.a1
pyrus_communis	pycom09g05310 pycom17g10920
rosa_chinensis	RchiOBHm_Chr2g0155661
rosa_laevigata	RLG00000020852
rosa_multiflora	Rmu_ssc0000430.1_g000004
rosa_roxburghii	Rroxscaffold_2G00093580
rosa_rugosa	Rorug02G0448900
rosa_samantha	Rh2AG515000 Rh2BG525900 Rh2CG499900 Rh2DG534800
rosa_wichuraiana	Rw2G042320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	599
AccBSI	CCGCTC	1 cut(s)	514
AccI	GTMKAC	2 cut(s)	1023, 1172
AccIII	TCCGGA	1 cut(s)	536
AciI	CCGC	6 cut(s)	156, 221, 494, 512, 907, 1126
AclWI	GGATC	4 cut(s)	520, 770, 789, 802
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	63
AcuI	CTGAAG	2 cut(s)	234, 951
AcyI	GRCGYC	1 cut(s)	998
AfaI	GTAC	2 cut(s)	954, 1153
AgsI	TTSAA	4 cut(s)	152, 478, 548, 788
AjnI	CCWGG	1 cut(s)	981
AjuI	GAANNNNNNNTTGG	4 cut(s)	300, 332, 804, 836
Alw21I	GWGCWC	3 cut(s)	23, 405, 1116
Alw26I	GTCTC	3 cut(s)	156, 289, 773
AlwI	GGATC	4 cut(s)	520, 770, 789, 802
Ama87I	CYCGRG	2 cut(s)	895, 936
Aor13HI	TCCGGA	1 cut(s)	536
AoxI	GGCC	3 cut(s)	141, 222, 898
ApeKI	GCWGC	4 cut(s)	446, 506, 1061, 1142
ApoI	RAATTY	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	873
AspS9I	GGNCC	1 cut(s)	898
AsuC2I	CCSGG	3 cut(s)	866, 896, 897
AsuHPI	GGTGA	2 cut(s)	143, 283
AvaI	CYCGRG	2 cut(s)	895, 936
BamHI	GGATCC	1 cut(s)	794
BanII	GRGCYC	1 cut(s)	405
BauI	CACGAG	2 cut(s)	948, 1036
BbsI	GAAGAC	2 cut(s)	180, 1095
Bbv12I	GWGCWC	3 cut(s)	23, 405, 1116
BbvCI	CCTCAGC	1 cut(s)	530
BbvI	GCAGC	4 cut(s)	458, 493, 1048, 1129
BccI	CCATC	3 cut(s)	785, 914, 1040
BceAI	ACGGC	1 cut(s)	548
BciT130I	CCWGG	1 cut(s)	983
BcnI	CCSGG	3 cut(s)	866, 896, 897
BcoDI	GTCTC	3 cut(s)	156, 289, 773
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	4 cut(s)	24, 444, 624, 915
BfuAI	ACCTGC	1 cut(s)	599
BisI	GCNGC	8 cut(s)	156, 222, 447, 495, 507, 1062, 1126, 1143
BlsI	GCNGC	8 cut(s)	157, 223, 448, 496, 508, 1063, 1127, 1144
Bme1390I	CCNGG	4 cut(s)	866, 896, 897, 983
BmeT110I	CYCGRG	2 cut(s)	895, 936
BmgT120I	GGNCC	1 cut(s)	898
BmiI	GGNNCC	2 cut(s)	80, 796
BmrFI	CCNGG	4 cut(s)	866, 896, 897, 983
BmsI	GCATC	3 cut(s)	289, 550, 610
BpiI	GAAGAC	2 cut(s)	180, 1095
BplI	GAGNNNNNCTC	2 cut(s)	816, 848
BpmI	CTGGAG	3 cut(s)	399, 522, 1031
Bpu10I	CCTNAGC	1 cut(s)	530
BpuEI	CTTGAG	2 cut(s)	158, 392
BpuMI	CCSGG	3 cut(s)	866, 896, 897
BsaHI	GRCGYC	1 cut(s)	998
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	2 cut(s)	895, 981
BsaWI	WCCGGW	1 cut(s)	536
Bse1I	ACTGG	1 cut(s)	1089
Bse3DI	GCAATG	2 cut(s)	352, 1029
BseAI	TCCGGA	1 cut(s)	536
BseBI	CCWGG	1 cut(s)	983
BseDI	CCNNGG	2 cut(s)	895, 981
BseGI	GGATG	1 cut(s)	113
BseMI	GCAATG	2 cut(s)	352, 1029
BseMII	CTCAG	2 cut(s)	544, 735
BseNI	ACTGG	1 cut(s)	1089
BseRI	GAGGAG	8 cut(s)	26, 190, 193, 196, 381, 395, 627, 641
BseXI	GCAGC	4 cut(s)	458, 493, 1048, 1129
BsgI	GTGCAG	2 cut(s)	492, 909
BshFI	GGCC	3 cut(s)	143, 224, 900
BsiHKAI	GWGCWC	3 cut(s)	23, 405, 1116
BsiHKCI	CYCGRG	2 cut(s)	895, 936
BsiSI	CCGG	3 cut(s)	537, 865, 896
BslFI	GGGAC	1 cut(s)	878
BsmAI	GTCTC	3 cut(s)	156, 289, 773
BsmFI	GGGAC	1 cut(s)	878
BsmI	GAATGC	1 cut(s)	665
BsnI	GGCC	3 cut(s)	143, 224, 900
Bso31I	GGTCTC	1 cut(s)	289
BsoBI	CYCGRG	2 cut(s)	895, 936
Bsp1286I	GDGCHC	3 cut(s)	23, 405, 1116
Bsp13I	TCCGGA	1 cut(s)	536
Bsp1407I	TGTACA	1 cut(s)	1151
Bsp143I	GATC	4 cut(s)	133, 525, 762, 794
BspACI	CCGC	6 cut(s)	156, 221, 494, 512, 907, 1126
BspANI	GGCC	3 cut(s)	143, 224, 900
BspCNI	CTCAG	2 cut(s)	543, 734
BspEI	TCCGGA	1 cut(s)	536
BspLI	GGNNCC	2 cut(s)	80, 796
BspMAI	CTGCAG	1 cut(s)	448
BspMI	ACCTGC	1 cut(s)	599
BspPI	GGATC	4 cut(s)	520, 770, 789, 802
BspQI	GCTCTTC	1 cut(s)	330
BspTNI	GGTCTC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	514
BsrDI	GCAATG	2 cut(s)	352, 1029
BsrGI	TGTACA	1 cut(s)	1151
BsrI	ACTGG	1 cut(s)	1089
BssECI	CCNNGG	2 cut(s)	895, 981
BssMI	GATC	4 cut(s)	133, 525, 762, 794
BssNAI	GTATAC	1 cut(s)	1024
BssNI	GRCGYC	1 cut(s)	998
BssSI	CACGAG	2 cut(s)	948, 1036
Bst1107I	GTATAC	1 cut(s)	1024
Bst2BI	CACGAG	2 cut(s)	948, 1036
Bst2UI	CCWGG	1 cut(s)	983
Bst4CI	ACNGT	3 cut(s)	25, 462, 916
Bst6I	CTCTTC	3 cut(s)	214, 321, 330
BstACI	GRCGYC	1 cut(s)	998
BstAUI	TGTACA	1 cut(s)	1151
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	3 cut(s)	530, 721, 968
BstF5I	GGATG	1 cut(s)	113
BstKTI	GATC	4 cut(s)	136, 528, 765, 797
BstMAI	GTCTC	3 cut(s)	156, 289, 773
BstMBI	GATC	4 cut(s)	133, 525, 762, 794
BstMWI	GCNNNNNNNGC	9 cut(s)	13, 308, 446, 503, 569, 824, 1058, 1070, 1125
BstNI	CCWGG	1 cut(s)	983
BstNSI	RCATGY	1 cut(s)	818
BstSCI	CCNGG	4 cut(s)	864, 894, 895, 981
BstSFI	CTRYAG	4 cut(s)	24, 444, 624, 915
BstV1I	GCAGC	4 cut(s)	458, 493, 1048, 1129
BstV2I	GAAGAC	2 cut(s)	180, 1095
BstX2I	RGATCY	3 cut(s)	525, 762, 794
BstYI	RGATCY	3 cut(s)	525, 762, 794
BstZ17I	GTATAC	1 cut(s)	1024
BsuRI	GGCC	3 cut(s)	143, 224, 900
BtsCI	GGATG	1 cut(s)	113
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	3 cut(s)	21, 441, 458
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	898
Cfr9I	CCCGGG	1 cut(s)	895
CseI	GACGC	2 cut(s)	987, 1134
Csp6I	GTAC	2 cut(s)	953, 1152
CviAII	CATG	7 cut(s)	59, 75, 815, 1093, 1108, 1120, 1176
CviQI	GTAC	2 cut(s)	953, 1152
DdeI	CTNAG	3 cut(s)	530, 721, 968
DpnI	GATC	4 cut(s)	135, 527, 764, 796
DpnII	GATC	4 cut(s)	133, 525, 762, 794
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	3 cut(s)	214, 321, 330
EarI	CTCTTC	3 cut(s)	214, 321, 330
Ecl136II	GAGCTC	1 cut(s)	403
Eco24I	GRGCYC	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	403
Eco57I	CTGAAG	2 cut(s)	234, 951
Eco88I	CYCGRG	2 cut(s)	895, 936
EcoICRI	GAGCTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	981
EcoT38I	GRGCYC	1 cut(s)	405
FaeI	CATG	7 cut(s)	62, 78, 818, 1096, 1111, 1123, 1179
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	1 cut(s)	878
FatI	CATG	7 cut(s)	58, 74, 814, 1092, 1107, 1119, 1175
FblI	GTMKAC	2 cut(s)	1023, 1172
Fnu4HI	GCNGC	8 cut(s)	156, 222, 447, 495, 507, 1062, 1126, 1143
FokI	GGATG	1 cut(s)	100
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	8 cut(s)	156, 222, 447, 495, 507, 1062, 1126, 1143
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	8 cut(s)	156, 222, 447, 495, 507, 1062, 1126, 1143
GsuI	CTGGAG	3 cut(s)	399, 522, 1031
HaeIII	GGCC	3 cut(s)	143, 224, 900
HapII	CCGG	3 cut(s)	537, 865, 896
HgaI	GACGC	2 cut(s)	987, 1134
Hin1I	GRCGYC	1 cut(s)	998
Hin1II	CATG	7 cut(s)	62, 78, 818, 1096, 1111, 1123, 1179
HincII	GTYRAC	1 cut(s)	912
HindII	GTYRAC	1 cut(s)	912
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	5 cut(s)	71, 229, 259, 607, 974
HpaII	CCGG	3 cut(s)	537, 865, 896
HphI	GGTGA	2 cut(s)	143, 283
Hpy166II	GTNNAC	5 cut(s)	912, 953, 1024, 1154, 1173
Hpy188I	TCNGA	5 cut(s)	70, 170, 525, 724, 846
Hpy8I	GTNNAC	5 cut(s)	912, 953, 1024, 1154, 1173
Hpy99I	CGWCG	1 cut(s)	1003
HpyAV	CCTTC	4 cut(s)	710, 722, 878, 1167
HpyCH4III	ACNGT	3 cut(s)	25, 462, 916
HpyCH4V	TGCA	8 cut(s)	446, 473, 509, 594, 663, 740, 890, 1073
HpyF10VI	GCNNNNNNNGC	9 cut(s)	13, 308, 446, 503, 569, 824, 1058, 1070, 1125
HpyF3I	CTNAG	3 cut(s)	530, 721, 968
Hsp92I	GRCGYC	1 cut(s)	998
Hsp92II	CATG	7 cut(s)	62, 78, 818, 1096, 1111, 1123, 1179
Kpn2I	TCCGGA	1 cut(s)	536
Kzo9I	GATC	4 cut(s)	133, 525, 762, 794
LguI	GCTCTTC	1 cut(s)	330
Lsp1109I	GCAGC	4 cut(s)	458, 493, 1048, 1129
LweI	GCATC	3 cut(s)	289, 550, 610
MaeI	CTAG	1 cut(s)	320
MaeIII	GTNAC	4 cut(s)	271, 370, 565, 1080
MalI	GATC	4 cut(s)	135, 527, 764, 796
MbiI	CCGCTC	1 cut(s)	514
MboI	GATC	4 cut(s)	133, 525, 762, 794
MflI	RGATCY	3 cut(s)	525, 762, 794
MhlI	GDGCHC	3 cut(s)	23, 405, 1116
MluCI	AATT	4 cut(s)	63, 147, 612, 1017
MlyI	GAGTC	3 cut(s)	80, 223, 601
MmeI	TCCRAC	2 cut(s)	741, 802
MroI	TCCGGA	1 cut(s)	536
MroXI	GAANNNNTTC	1 cut(s)	873
MseI	TTAA	6 cut(s)	236, 428, 455, 767, 879, 1098
MspA1I	CMGCKG	4 cut(s)	377, 467, 629, 929
MspI	CCGG	3 cut(s)	537, 865, 896
MspR9I	CCNGG	4 cut(s)	866, 896, 897, 983
Mva1269I	GAATGC	1 cut(s)	665
MvaI	CCWGG	1 cut(s)	983
MwoI	GCNNNNNNNGC	9 cut(s)	13, 308, 446, 503, 569, 824, 1058, 1070, 1125
NciI	CCSGG	3 cut(s)	866, 896, 897
NdeII	GATC	4 cut(s)	133, 525, 762, 794
NlaIII	CATG	7 cut(s)	62, 78, 818, 1096, 1111, 1123, 1179
NlaIV	GGNNCC	2 cut(s)	80, 796
NmuCI	GTSAC	3 cut(s)	271, 370, 565
NspI	RCATGY	1 cut(s)	818
PciSI	GCTCTTC	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	349
PctI	GAATGC	1 cut(s)	665
PdmI	GAANNNNTTC	1 cut(s)	873
PfeI	GAWTC	2 cut(s)	259, 974
PkrI	GCNGC	8 cut(s)	157, 223, 448, 496, 508, 1063, 1127, 1144
PleI	GAGTC	3 cut(s)	79, 223, 601
PpsI	GAGTC	3 cut(s)	79, 223, 601
PsiI	TTATAA	1 cut(s)	644
Psp124BI	GAGCTC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	981
PspGI	CCWGG	1 cut(s)	981
PspN4I	GGNNCC	2 cut(s)	80, 796
PspPI	GGNCC	1 cut(s)	898
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	3 cut(s)	525, 762, 794
PvuII	CAGCTG	4 cut(s)	377, 467, 629, 929
RsaI	GTAC	2 cut(s)	954, 1153
RsaNI	GTAC	2 cut(s)	953, 1152
SacI	GAGCTC	1 cut(s)	405
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	6 cut(s)	236, 428, 455, 767, 879, 1098
SatI	GCNGC	8 cut(s)	156, 222, 447, 495, 507, 1062, 1126, 1143
Sau3AI	GATC	4 cut(s)	133, 525, 762, 794
Sau96I	GGNCC	1 cut(s)	898
SchI	GAGTC	3 cut(s)	80, 223, 601
ScrFI	CCNGG	4 cut(s)	866, 896, 897, 983
SduI	GDGCHC	3 cut(s)	23, 405, 1116
SfaNI	GCATC	3 cut(s)	289, 550, 610
SfcI	CTRYAG	4 cut(s)	24, 444, 624, 915
SmaI	CCCGGG	1 cut(s)	897
SmlI	CTYRAG	2 cut(s)	137, 407
SmoI	CTYRAG	2 cut(s)	137, 407
Sse9I	AATT	4 cut(s)	63, 147, 612, 1017
SsiI	CCGC	6 cut(s)	156, 221, 494, 512, 907, 1126
SspI	AATATT	1 cut(s)	1165
SspMI	CTAG	1 cut(s)	320
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	4 cut(s)	864, 894, 895, 981
TaaI	ACNGT	3 cut(s)	25, 462, 916
TaqI	TCGA	5 cut(s)	105, 232, 705, 853, 1044
TaqII	GACCGA	1 cut(s)	366
TasI	AATT	4 cut(s)	63, 147, 612, 1017
TatI	WGTACW	2 cut(s)	952, 1151
TauI	GCSGC	4 cut(s)	158, 224, 497, 1128
TfiI	GAWTC	2 cut(s)	259, 974
Tru1I	TTAA	6 cut(s)	236, 428, 455, 767, 879, 1098
Tru9I	TTAA	6 cut(s)	236, 428, 455, 767, 879, 1098
TscAI	CASTG	3 cut(s)	28, 448, 465
TseFI	GTSAC	3 cut(s)	271, 370, 565
TseI	GCWGC	4 cut(s)	446, 506, 1061, 1142
Tsp45I	GTSAC	3 cut(s)	271, 370, 565
TspDTI	ATGAA	1 cut(s)	75
TspMI	CCCGGG	1 cut(s)	895
TspRI	CASTG	3 cut(s)	28, 448, 465
XapI	RAATTY	1 cut(s)	63
XceI	RCATGY	1 cut(s)	818
XmaI	CCCGGG	1 cut(s)	895
XmiI	GTMKAC	2 cut(s)	1023, 1172
XmnI	GAANNNNTTC	1 cut(s)	873
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.