AT4G13110

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013483
Physical Location & Seq
Forward (+)
7641378 .. 7642707
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13110.1

Sequence Viewer

Length: 951 bp
ATGGATCATCAACATAGCTCCGATTCACCTATGCATGAATCCACAACTTCTTCTTCTTCTTCTTCATGGAGTTTCGGCAATCTAATCAAAACCCTATCGACAAAATCCGAATCTGTAATCGGATCCTACCGTCGCGATTTGGTCGAATTCGGATCCGAATTGAAGAAAGAAACCTCAATAATCCGACGAGTAGCTTCAAGATTACCTGATTCTCTCGAAATTGGCGCCTCCGTCGCTTCGGAATCTCTCGAATCGGTAGGTCAAGTTATCGACGATATCGGCGCCACCGTGTGGAAATCAACGGCTAAGATTATTTCTCGTGGTAAGGAATCTTTAGAACCGAATCGTGACCGTACAAATCAGGTTTTGTCGTTGAAACCTTATCGTCGTTTTGAGATGATGTTACTTGCGTTACAATCTGATAAAGGCACGTTTGTTAGAGAACCTGATGATTTAAGTGATTTTGAGAATTGGAGTTTAGGGTTGAAGTTAGAGGAGAAAAGGAATGAGATTGTTGAGTTGATTAATGGGAACAAAGGTGTTAAAGAGATCTATGAGGAGATTGTTCCTGTTGAAGTTGATGCTGAGACTTTTTGGAGAAGGTATTATTATAAAGTTTATAAGCTTGAGCAAGTAGAGGAAGCTAGGGTTAAGCTTGTGAAGAGAGCTATTTCTGGTGAAGAAGATGAGGATTTAAGCTGGGATCTTGATGATGAGAAGGAGAAGGTAGAGAGCAGAGATGTTTCGTCTAAGGATAGTGATTATTCGGTGATTTCGACACAGCCATCGTTACTTGGTAGTGAAGATCTTGGGTGGGATAAGATGGAAGAAGATATCAGAAGCAATGAGGAGAGATTGGATTGGCGAAGACGGGCCGGTGTAGCGGTGGAGGAAGAAGAGGATTTATCTTGGGATATTGAAGATGAAGATGATGACTCTGTTCAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

316

Amino Acids

36.24

Weight (kDa)

4.54

Isoelectric Point (pI)

58.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 158 - 214 5.6e-16 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13110
fragaria_vesca FvH4_4g14080
malus_domestica MD13G1179500.v1.1 MD16G1180600.v1.1
prunus_persica Prupe.1G148100_v2.0.a1
pyrus_communis pycom16g15160 pycom16g15170
rosa_chinensis RchiOBHm_Chr4g0419271
rosa_laevigata RLG00000007820
rosa_multiflora Rmu_co8252943.1_g000001 Rmu_sc0004932.1_g000005
rosa_roxburghii Rroxscaffold_5G00362260
rosa_rugosa Rorug04G0158000
rosa_samantha Rh4AG219700 Rh4BG221200 Rh4CG232500 Rh4DG218700
rosa_wichuraiana Rw4G018790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 612, 621
AccB1I GGYRCC 2 cut(s) 224, 281
AccB7I CCANNNNNTGG 1 cut(s) 291
AccII CGCG 1 cut(s) 135
AciI CCGC 1 cut(s) 884
AclWI GGATC 6 cut(s) 12, 117, 130, 147, 160, 711
AcsI RAATTY 1 cut(s) 146
AcyI GRCGYC 2 cut(s) 225, 282
AdeI CACNNNGTG 1 cut(s) 291
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 7 cut(s) 163, 198, 376, 487, 575, 920, 944
AluBI AGCT 7 cut(s) 18, 194, 625, 644, 655, 668, 699
AluI AGCT 7 cut(s) 18, 194, 625, 644, 655, 668, 699
Alw26I GTCTC 1 cut(s) 581
AlwI GGATC 6 cut(s) 12, 117, 130, 147, 160, 711
AoxI GGCC 1 cut(s) 873
ApoI RAATTY 1 cut(s) 146
AseI ATTAAT 1 cut(s) 525
AspLEI GCGC 2 cut(s) 227, 284
AspS9I GGNCC 1 cut(s) 873
AsuHPI GGTGA 3 cut(s) 18, 689, 781
BamHI GGATCC 2 cut(s) 122, 152
BanI GGYRCC 2 cut(s) 224, 281
BauI CACGAG 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 874
BccI CCATC 2 cut(s) 793, 817
BceAI ACGGC 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 581
BfaI CTAG 1 cut(s) 645
BfoI RGCGCY 2 cut(s) 228, 285
BglII AGATCT 2 cut(s) 549, 805
BmgT120I GGNCC 1 cut(s) 873
BmiI GGNNCC 4 cut(s) 124, 154, 226, 283
BmsI GCATC 1 cut(s) 571
BpiI GAAGAC 1 cut(s) 874
BpuEI CTTGAG 1 cut(s) 647
BsaHI GRCGYC 2 cut(s) 225, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse118I RCCGGY 1 cut(s) 875
Bse3DI GCAATG 1 cut(s) 850
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMI GCAATG 1 cut(s) 850
BseMII CTCAG 1 cut(s) 576
BseRI GAGGAG 3 cut(s) 509, 572, 863
BseYI CCCAGC 1 cut(s) 699
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 1 cut(s) 875
BshNI GGYRCC 2 cut(s) 224, 281
BsiSI CCGG 1 cut(s) 876
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 581
BsnI GGCC 1 cut(s) 875
Bsp143I GATC 6 cut(s) 4, 122, 152, 549, 703, 805
Bsp68I TCGCGA 1 cut(s) 135
BspACI CCGC 1 cut(s) 884
BspANI GGCC 1 cut(s) 875
BspCNI CTCAG 1 cut(s) 577
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 4 cut(s) 124, 154, 226, 283
BspPI GGATC 6 cut(s) 12, 117, 130, 147, 160, 711
BspT107I GGYRCC 2 cut(s) 224, 281
BsrDI GCAATG 1 cut(s) 850
BsrFI RCCGGY 1 cut(s) 875
BssAI RCCGGY 1 cut(s) 875
BssMI GATC 6 cut(s) 4, 122, 152, 549, 703, 805
BssNI GRCGYC 2 cut(s) 225, 282
BssSI CACGAG 1 cut(s) 318
Bst2BI CACGAG 1 cut(s) 318
Bst4CI ACNGT 3 cut(s) 131, 289, 353
Bst6I CTCTTC 2 cut(s) 656, 891
BstACI GRCGYC 2 cut(s) 225, 282
BstDEI CTNAG 3 cut(s) 306, 585, 750
BstFNI CGCG 1 cut(s) 135
BstH2I RGCGCY 2 cut(s) 228, 285
BstHHI GCGC 2 cut(s) 227, 284
BstKTI GATC 6 cut(s) 7, 125, 155, 552, 706, 808
BstMAI GTCTC 1 cut(s) 581
BstMBI GATC 6 cut(s) 4, 122, 152, 549, 703, 805
BstMWI GCNNNNNNNGC 2 cut(s) 233, 881
BstUI CGCG 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 874
BstX2I RGATCY 5 cut(s) 122, 152, 549, 703, 805
BstYI RGATCY 5 cut(s) 122, 152, 549, 703, 805
BsuRI GGCC 1 cut(s) 875
BtuMI TCGCGA 1 cut(s) 135
CfoI GCGC 2 cut(s) 227, 284
Cfr10I RCCGGY 1 cut(s) 875
Cfr13I GGNCC 1 cut(s) 873
Csp6I GTAC 1 cut(s) 354
CviAII CATG 2 cut(s) 35, 66
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 3 cut(s) 306, 585, 750
DinI GGCGCC 2 cut(s) 226, 283
DpnI GATC 6 cut(s) 6, 124, 154, 551, 705, 807
DpnII GATC 6 cut(s) 4, 122, 152, 549, 703, 805
DraIII CACNNNGTG 1 cut(s) 291
Eam1104I CTCTTC 2 cut(s) 656, 891
EarI CTCTTC 2 cut(s) 656, 891
Eco32I GATATC 2 cut(s) 277, 835
EcoRI GAATTC 1 cut(s) 146
EcoRV GATATC 2 cut(s) 277, 835
EcoT22I ATGCAT 1 cut(s) 36
EgeI GGCGCC 2 cut(s) 226, 283
EheI GGCGCC 2 cut(s) 226, 283
FaeI CATG 2 cut(s) 38, 69
FaiI YATR 7 cut(s) 15, 32, 36, 67, 555, 612, 621
FatI CATG 2 cut(s) 34, 65
FspBI CTAG 1 cut(s) 645
GlaI GCGC 2 cut(s) 226, 283
GsaI CCCAGC 1 cut(s) 703
HaeII RGCGCY 2 cut(s) 228, 285
HaeIII GGCC 1 cut(s) 875
HapII CCGG 1 cut(s) 876
HhaI GCGC 2 cut(s) 227, 284
Hin1I GRCGYC 2 cut(s) 225, 282
Hin1II CATG 2 cut(s) 38, 69
Hin6I GCGC 2 cut(s) 225, 282
HinP1I GCGC 2 cut(s) 225, 282
HindIII AAGCTT 2 cut(s) 623, 653
HinfI GANTC 9 cut(s) 23, 38, 110, 209, 242, 251, 329, 343, 935
HpaII CCGG 1 cut(s) 876
HphI GGTGA 3 cut(s) 18, 689, 781
Hpy188I TCNGA 9 cut(s) 22, 109, 122, 152, 157, 185, 241, 421, 839
Hpy188III TCNNGA 6 cut(s) 134, 198, 215, 248, 347, 707
Hpy99I CGWCG 5 cut(s) 135, 189, 236, 275, 390
HpyAV CCTTC 3 cut(s) 594, 712, 718
HpyCH4III ACNGT 3 cut(s) 131, 289, 353
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 881
HpyF3I CTNAG 3 cut(s) 306, 585, 750
HpySE526I ACGT 1 cut(s) 431
Hsp92I GRCGYC 2 cut(s) 225, 282
Hsp92II CATG 2 cut(s) 38, 69
HspAI GCGC 2 cut(s) 225, 282
KasI GGCGCC 2 cut(s) 224, 281
Kzo9I GATC 6 cut(s) 4, 122, 152, 549, 703, 805
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 7 cut(s) 219, 347, 459, 582, 660, 685, 889
LweI GCATC 1 cut(s) 571
MaeI CTAG 1 cut(s) 645
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 4 cut(s) 347, 402, 411, 789
MalI GATC 6 cut(s) 6, 124, 154, 551, 705, 807
MboI GATC 6 cut(s) 4, 122, 152, 549, 703, 805
MflI RGATCY 5 cut(s) 122, 152, 549, 703, 805
MluCI AATT 4 cut(s) 146, 158, 219, 469
Mly113I GGCGCC 2 cut(s) 225, 282
MlyI GAGTC 1 cut(s) 929
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 9 cut(s) 184, 238, 487, 550, 631, 682, 841, 883, 892
Mph1103I ATGCAT 1 cut(s) 36
MseI TTAA 5 cut(s) 455, 525, 543, 651, 695
MspI CCGG 1 cut(s) 876
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 233, 881
NarI GGCGCC 2 cut(s) 225, 282
NdeII GATC 6 cut(s) 4, 122, 152, 549, 703, 805
NlaIII CATG 2 cut(s) 38, 69
NlaIV GGNNCC 4 cut(s) 124, 154, 226, 283
NmuCI GTSAC 1 cut(s) 347
NruI TCGCGA 1 cut(s) 135
NsiI ATGCAT 1 cut(s) 36
PcsI WCGNNNNNNNCGW 2 cut(s) 285, 773
PfeI GAWTC 8 cut(s) 23, 38, 110, 209, 242, 251, 329, 343
PflMI CCANNNNNTGG 1 cut(s) 291
PleI GAGTC 1 cut(s) 929
PluTI GGCGCC 2 cut(s) 228, 285
PpsI GAGTC 1 cut(s) 929
PshBI ATTAAT 1 cut(s) 525
PsiI TTATAA 2 cut(s) 612, 621
PspFI CCCAGC 1 cut(s) 699
PspN4I GGNNCC 4 cut(s) 124, 154, 226, 283
PspPI GGNCC 1 cut(s) 873
PsuI RGATCY 5 cut(s) 122, 152, 549, 703, 805
RruI TCGCGA 1 cut(s) 135
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SaqAI TTAA 5 cut(s) 455, 525, 543, 651, 695
Sau3AI GATC 6 cut(s) 4, 122, 152, 549, 703, 805
Sau96I GGNCC 1 cut(s) 873
SchI GAGTC 1 cut(s) 929
SfaNI GCATC 1 cut(s) 571
SfoI GGCGCC 2 cut(s) 226, 283
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
Sse9I AATT 4 cut(s) 146, 158, 219, 469
SsiI CCGC 1 cut(s) 884
SspDI GGCGCC 2 cut(s) 224, 281
SspMI CTAG 1 cut(s) 645
TaaI ACNGT 3 cut(s) 131, 289, 353
TaiI ACGT 1 cut(s) 434
TaqI TCGA 6 cut(s) 98, 144, 216, 249, 270, 776
TasI AATT 4 cut(s) 146, 158, 219, 469
TfiI GAWTC 8 cut(s) 23, 38, 110, 209, 242, 251, 329, 343
Tru1I TTAA 5 cut(s) 455, 525, 543, 651, 695
Tru9I TTAA 5 cut(s) 455, 525, 543, 651, 695
TseFI GTSAC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 3 cut(s) 51, 54, 939
TspGWI ACGGA 1 cut(s) 220
Van91I CCANNNNNTGG 1 cut(s) 291
VspI ATTAAT 1 cut(s) 525
XapI RAATTY 1 cut(s) 146
XspI CTAG 1 cut(s) 645
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.