MD16G1180600.v1.1

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0013483
Physical Location & Seq
Forward (+)
15518695 .. 15520376
1682 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1180600.v1.1.491

Sequence Viewer

Length: 1239 bp
ATGAATTTCTTCAACTCGGTCTTCTCCGACGAGCCCCTTCCCTCCGACGATCCGCACTACGACGCCCCAAACGACGGCGTCGACCCTAACCCGGAGTCGGATCCGGAACCGGAACTAAGTTCGCGTCCAAATTCCGGCACCGGGTCATGGAGCTTTGGAGGTCTGATCACGACTCTGGCGACGAAGTCCGGATCCGTTATGAAGAACTACCGCCGGGATCTCGAGGAGTTCGGGTCCGAGTTGAAGAAGGAGACGGCGGTGATCCGGGAGGTGGCTTCGCGCGCCGTCAAGGATCTTCCGGGTTCGCTCGAGGTCGGCGCGTCGGTGGCTCAGGAATCGCTGGAGACGGTGGGCCAGGCGATCGATGATATCGGAAGCACCGTCTGGAAATCGACGACGGAGATCATCTCTCACGGTAGGGACGCAATCTCAGCTGATGATGATGTTGAATCTGATAATTTGGATGATAATGTTAGTGGTAATCGTGAGATTAGTGGTGATAATAAGAGATTGAGTAGCAGTGGTATTGATTTGAGAAAGTACAGTAGGTTTGAAGCTCAGAATTTGATGAGGGAAAATGGAGTGATTGGTGAGATTTATGGGGAGATTGTGCCTGGTAAGGTTGATAGTGAGAGCTTCTGGTCTAGGTACTTTTATCGGGTGCATAAGCTGAAGGAAGCCGAGGAGGCGAGAGCGAAACTCGTGAATCGGGCAATTTCGGGGGCGGAAGAGGATTTGAGTTGGGATTTTGATGATGATGATGATGATAAAGATAAAGATGTAGGGAAGGAAGAGGGTGATGGATCGGATTTGAAGGTTGGTTCGAGTGGGACTGTAGAGTTGGAGAAGCAAAAGCAAGCTTCTTGTGAAGGTGCTGCAATGGAGGGTGACAATGTTGAGAGTGTTGAAGTTGCTGCAAGGGAGTCTGTGAGTAGTGATGGTGGGGATAAGGCAGAGTCGAAATCTGATGGAGTGTCGGAAGGGAAGACGGATGGTGGTGATTCTTGGAAAGAGAGTGATGTTTCGATTGTTTCGAGCCAGCCCTCGATGCCTGAGGAAGAGGATCTTGGGTGGGATGAGATTGAAGATTTAGGAAGCATTGATGAGAACGAAGGGGACGCAACGGGGAGCAGTGCGAATAGAGCGAATTTACATAAGCGGCTCAGTGCAGCAGAGGAAGAGGAGGATTTGAGCTGGGATATCGAAGATGATGAAGAAGATGTCACTATTAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

413

Amino Acids

44.68

Weight (kDa)

4.17

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 186 - 229 3.2e-12 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13110
fragaria_vesca FvH4_4g14080
malus_domestica MD13G1179500.v1.1 MD16G1180600.v1.1
prunus_persica Prupe.1G148100_v2.0.a1
pyrus_communis pycom16g15160 pycom16g15170
rosa_chinensis RchiOBHm_Chr4g0419271
rosa_laevigata RLG00000007820
rosa_multiflora Rmu_co8252943.1_g000001 Rmu_sc0004932.1_g000005
rosa_roxburghii Rroxscaffold_5G00362260
rosa_rugosa Rorug04G0158000
rosa_samantha Rh4AG219700 Rh4BG221200 Rh4CG232500 Rh4DG218700
rosa_wichuraiana Rw4G018790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AccI GTMKAC 1 cut(s) 81
AccII CGCG 4 cut(s) 124, 280, 282, 320
AccIII TCCGGA 2 cut(s) 103, 188
AciI CCGC 5 cut(s) 53, 211, 257, 725, 1159
AcsI RAATTY 4 cut(s) 4, 130, 562, 1147
AcuI CTGAAG 1 cut(s) 692
AcyI GRCGYC 2 cut(s) 63, 78
AfaI GTAC 2 cut(s) 542, 650
AfiI CCNNNNNNNGG 7 cut(s) 74, 91, 97, 134, 141, 147, 271
AgsI TTSAA 7 cut(s) 13, 244, 449, 554, 814, 908, 1085
AjnI CCWGG 2 cut(s) 354, 613
AjuI GAANNNNNNNTTGG 2 cut(s) 1050, 1082
AluBI AGCT 7 cut(s) 153, 434, 557, 636, 670, 860, 1194
AluI AGCT 7 cut(s) 153, 434, 557, 636, 670, 860, 1194
Alw26I GTCTC 2 cut(s) 245, 338
Ama87I CYCGRG 2 cut(s) 221, 308
Aor13HI TCCGGA 2 cut(s) 103, 188
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 3 cut(s) 875, 914, 1169
ApoI RAATTY 4 cut(s) 4, 130, 562, 1147
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 3 cut(s) 282, 284, 320
AspS9I GGNCC 2 cut(s) 234, 352
AsuC2I CCSGG 5 cut(s) 92, 142, 215, 266, 300
AsuHPI GGTGA 6 cut(s) 271, 509, 602, 809, 899, 1010
AvaI CYCGRG 2 cut(s) 221, 308
AvaII GGWCC 1 cut(s) 234
AxyI CCTNAGG 1 cut(s) 1053
BamHI GGATCC 2 cut(s) 100, 191
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 36
BauI CACGAG 1 cut(s) 701
BbsI GAAGAC 2 cut(s) 13, 992
BbvI GCAGC 3 cut(s) 862, 901, 1181
BccI CCATC 4 cut(s) 794, 932, 962, 986
BceAI ACGGC 3 cut(s) 91, 269, 270
BciT130I CCWGG 2 cut(s) 356, 615
BclI TGATCA 1 cut(s) 165
BcnI CCSGG 5 cut(s) 92, 142, 215, 266, 300
BcoDI GTCTC 2 cut(s) 245, 338
BfaI CTAG 1 cut(s) 645
BfmI CTRYAG 1 cut(s) 834
BglI GCCNNNNNGGC 1 cut(s) 686
BisI GCNGC 4 cut(s) 876, 915, 1160, 1170
BlsI GCNGC 4 cut(s) 877, 916, 1161, 1171
Bme1390I CCNGG 7 cut(s) 92, 142, 215, 266, 300, 356, 615
Bme18I GGWCC 1 cut(s) 234
BmeT110I CYCGRG 2 cut(s) 221, 308
BmgT120I GGNCC 2 cut(s) 234, 352
BmiI GGNNCC 5 cut(s) 102, 108, 139, 193, 235
BmrFI CCNGG 7 cut(s) 92, 142, 215, 266, 300, 356, 615
BmsI GCATC 1 cut(s) 1038
BpiI GAAGAC 2 cut(s) 13, 992
BplI GAGNNNNNCTC 4 cut(s) 392, 424, 684, 716
BpmI CTGGAG 1 cut(s) 362
Bpu10I CCTNAGC 1 cut(s) 330
BpuMI CCSGG 5 cut(s) 92, 142, 215, 266, 300
Bsa29I ATCGAT 1 cut(s) 363
BsaHI GRCGYC 2 cut(s) 63, 78
BsaJI CCNNGG 1 cut(s) 681
BsaWI WCCGGW 3 cut(s) 103, 109, 188
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 7 cut(s) 74, 91, 97, 134, 141, 147, 271
Bse21I CCTNAGG 1 cut(s) 1053
Bse3DI GCAATG 1 cut(s) 885
BseAI TCCGGA 2 cut(s) 103, 188
BseBI CCWGG 2 cut(s) 356, 615
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 681
BseGI GGATG 3 cut(s) 469, 997, 1081
BseLI CCNNNNNNNGG 7 cut(s) 74, 91, 97, 134, 141, 147, 271
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 5 cut(s) 344, 444, 572, 1044, 1177
BsePI GCGCGC 1 cut(s) 280
BseRI GAGGAG 3 cut(s) 239, 698, 1196
BseXI GCAGC 3 cut(s) 862, 901, 1181
BseYI CCCAGC 1 cut(s) 1194
BsgI GTGCAG 1 cut(s) 1188
Bsh1236I CGCG 4 cut(s) 124, 280, 282, 320
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 1 cut(s) 354
BshNI GGYRCC 1 cut(s) 137
BshVI ATCGAT 1 cut(s) 363
BsiEI CGRYCG 1 cut(s) 363
BsiHKCI CYCGRG 2 cut(s) 221, 308
BsiSI CCGG 9 cut(s) 92, 104, 110, 135, 141, 189, 214, 265, 299
BslFI GGGAC 3 cut(s) 434, 844, 1130
BslI CCNNNNNNNGG 7 cut(s) 74, 91, 97, 134, 141, 147, 271
BsmAI GTCTC 2 cut(s) 245, 338
BsmBI CGTCTC 2 cut(s) 245, 338
BsmFI GGGAC 3 cut(s) 434, 844, 1130
BsnI GGCC 1 cut(s) 354
BsoBI CYCGRG 2 cut(s) 221, 308
Bsp1286I GDGCHC 1 cut(s) 36
Bsp13I TCCGGA 2 cut(s) 103, 188
BspACI CCGC 5 cut(s) 53, 211, 257, 725, 1159
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 5 cut(s) 343, 443, 571, 1045, 1176
BspDI ATCGAT 1 cut(s) 363
BspEI TCCGGA 2 cut(s) 103, 188
BspFNI CGCG 4 cut(s) 124, 280, 282, 320
BspHI TCATGA 1 cut(s) 1235
BspLI GGNNCC 5 cut(s) 102, 108, 139, 193, 235
BspT107I GGYRCC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 885
BssECI CCNNGG 1 cut(s) 681
BssHII GCGCGC 1 cut(s) 280
BssNI GRCGYC 2 cut(s) 63, 78
BssSI CACGAG 1 cut(s) 701
Bst2BI CACGAG 1 cut(s) 701
Bst2UI CCWGG 2 cut(s) 356, 615
Bst4CI ACNGT 5 cut(s) 349, 382, 416, 545, 835
Bst6I CTCTTC 4 cut(s) 723, 786, 1053, 1173
BstACI GRCGYC 2 cut(s) 63, 78
BstC8I GCNNGC 3 cut(s) 282, 858, 1040
BstDEI CTNAG 6 cut(s) 116, 330, 430, 558, 1053, 1163
BstF5I GGATG 3 cut(s) 469, 997, 1081
BstFNI CGCG 4 cut(s) 124, 280, 282, 320
BstHHI GCGC 3 cut(s) 282, 284, 320
BstMAI GTCTC 2 cut(s) 245, 338
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 6 cut(s) 281, 326, 431, 686, 1048, 1142
BstNI CCWGG 2 cut(s) 356, 615
BstSCI CCNGG 7 cut(s) 90, 140, 213, 264, 298, 354, 613
BstSFI CTRYAG 1 cut(s) 834
BstUI CGCG 4 cut(s) 124, 280, 282, 320
BstV1I GCAGC 3 cut(s) 862, 901, 1181
BstV2I GAAGAC 2 cut(s) 13, 992
BstX2I RGATCY 5 cut(s) 100, 191, 217, 292, 1063
BstYI RGATCY 5 cut(s) 100, 191, 217, 292, 1063
Bsu15I ATCGAT 1 cut(s) 363
Bsu36I CCTNAGG 1 cut(s) 1053
BsuRI GGCC 1 cut(s) 354
BsuTUI ATCGAT 1 cut(s) 363
BtsCI GGATG 3 cut(s) 469, 997, 1081
BtsI GCAGTG 2 cut(s) 526, 1138
BtsIMutI CAGTG 3 cut(s) 526, 1138, 1171
Cac8I GCNNGC 3 cut(s) 282, 858, 1040
CciI TCATGA 1 cut(s) 1235
CfoI GCGC 3 cut(s) 282, 284, 320
Cfr13I GGNCC 2 cut(s) 234, 352
ClaI ATCGAT 1 cut(s) 363
CseI GACGC 6 cut(s) 67, 71, 113, 309, 431, 1127
Csp6I GTAC 2 cut(s) 541, 649
CviAII CATG 2 cut(s) 147, 1236
CviQI GTAC 2 cut(s) 541, 649
DdeI CTNAG 6 cut(s) 116, 330, 430, 558, 1053, 1163
Eam1104I CTCTTC 4 cut(s) 723, 786, 1053, 1173
EarI CTCTTC 4 cut(s) 723, 786, 1053, 1173
EciI GGCGGA 1 cut(s) 740
Eco24I GRGCYC 1 cut(s) 36
Eco32I GATATC 2 cut(s) 370, 1201
Eco47I GGWCC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 692
Eco81I CCTNAGG 1 cut(s) 1053
Eco88I CYCGRG 2 cut(s) 221, 308
EcoRII CCWGG 2 cut(s) 354, 613
EcoRV GATATC 2 cut(s) 370, 1201
EcoT38I GRGCYC 1 cut(s) 36
Esp3I CGTCTC 2 cut(s) 245, 338
FaeI CATG 2 cut(s) 150, 1239
FaiI YATR 6 cut(s) 148, 200, 600, 666, 1155, 1237
FalI AAGNNNNNCTT 2 cut(s) 1050, 1082
FaqI GGGAC 3 cut(s) 434, 844, 1130
FatI CATG 2 cut(s) 146, 1235
FbaI TGATCA 1 cut(s) 165
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 4 cut(s) 876, 915, 1160, 1170
FokI GGATG 3 cut(s) 476, 1004, 1088
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 4 cut(s) 876, 915, 1160, 1170
FspBI CTAG 1 cut(s) 645
GlaI GCGC 3 cut(s) 281, 283, 319
GluI GCNGC 4 cut(s) 876, 915, 1160, 1170
GsaI CCCAGC 1 cut(s) 1198
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 1 cut(s) 354
HapII CCGG 9 cut(s) 92, 104, 110, 135, 141, 189, 214, 265, 299
HgaI GACGC 6 cut(s) 67, 71, 113, 309, 431, 1127
HhaI GCGC 3 cut(s) 282, 284, 320
Hin1I GRCGYC 2 cut(s) 63, 78
Hin1II CATG 2 cut(s) 150, 1239
Hin6I GCGC 3 cut(s) 280, 282, 318
HinP1I GCGC 3 cut(s) 280, 282, 318
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 858
HinfI GANTC 8 cut(s) 95, 172, 335, 449, 706, 923, 956, 1001
HpaII CCGG 9 cut(s) 92, 104, 110, 135, 141, 189, 214, 265, 299
HphI GGTGA 6 cut(s) 271, 509, 602, 809, 899, 1010
Hpy166II GTNNAC 1 cut(s) 82
Hpy188III TCNNGA 9 cut(s) 104, 169, 189, 221, 332, 385, 485, 703, 1236
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 9 cut(s) 32, 50, 65, 77, 83, 184, 325, 397, 400
HpyAV CCTTC 8 cut(s) 47, 241, 667, 781, 808, 863, 974, 1106
HpyCH4III ACNGT 5 cut(s) 349, 382, 416, 545, 835
HpyCH4V TGCA 4 cut(s) 664, 878, 917, 1169
HpyF10VI GCNNNNNNNGC 6 cut(s) 281, 326, 431, 686, 1048, 1142
HpyF3I CTNAG 6 cut(s) 116, 330, 430, 558, 1053, 1163
Hsp92I GRCGYC 2 cut(s) 63, 78
Hsp92II CATG 2 cut(s) 150, 1239
HspAI GCGC 3 cut(s) 280, 282, 318
Kpn2I TCCGGA 2 cut(s) 103, 188
Ksp22I TGATCA 1 cut(s) 165
LmnI GCTCC 2 cut(s) 150, 1128
Lsp1109I GCAGC 3 cut(s) 862, 901, 1181
LweI GCATC 1 cut(s) 1038
MaeI CTAG 1 cut(s) 645
MaeIII GTNAC 2 cut(s) 887, 1222
MflI RGATCY 5 cut(s) 100, 191, 217, 292, 1063
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 6 cut(s) 4, 130, 457, 562, 714, 1147
MlyI GAGTC 4 cut(s) 104, 166, 932, 965
MmeI TCCRAC 5 cut(s) 51, 69, 78, 822, 957
MroI TCCGGA 2 cut(s) 103, 188
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 1230
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 9 cut(s) 92, 104, 110, 135, 141, 189, 214, 265, 299
MspR9I CCNGG 7 cut(s) 92, 142, 215, 266, 300, 356, 615
MvaI CCWGG 2 cut(s) 356, 615
MvnI CGCG 4 cut(s) 124, 280, 282, 320
MwoI GCNNNNNNNGC 6 cut(s) 281, 326, 431, 686, 1048, 1142
NciI CCSGG 5 cut(s) 92, 142, 215, 266, 300
NlaIII CATG 2 cut(s) 150, 1239
NlaIV GGNNCC 5 cut(s) 102, 108, 139, 193, 235
NmeAIII GCCGAG 1 cut(s) 706
NmuCI GTSAC 2 cut(s) 887, 1222
PaeR7I CTCGAG 2 cut(s) 221, 308
PagI TCATGA 1 cut(s) 1235
PauI GCGCGC 1 cut(s) 280
PcsI WCGNNNNNNNCGW 5 cut(s) 69, 78, 176, 378, 1031
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 4 cut(s) 335, 449, 706, 1001
PflFI GACNNNGTC 2 cut(s) 77, 184
PfoI TCCNGGA 1 cut(s) 264
PkrI GCNGC 4 cut(s) 877, 916, 1161, 1171
Ple19I CGATCG 1 cut(s) 363
PleI GAGTC 4 cut(s) 103, 166, 931, 964
PpsI GAGTC 4 cut(s) 103, 166, 931, 964
Psp6I CCWGG 2 cut(s) 354, 613
PspFI CCCAGC 1 cut(s) 1194
PspGI CCWGG 2 cut(s) 354, 613
PspN4I GGNNCC 5 cut(s) 102, 108, 139, 193, 235
PspPI GGNCC 2 cut(s) 234, 352
PspXI VCTCGAGB 1 cut(s) 308
PsuI RGATCY 5 cut(s) 100, 191, 217, 292, 1063
PsyI GACNNNGTC 2 cut(s) 77, 184
PteI GCGCGC 1 cut(s) 280
PvuI CGATCG 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 2 cut(s) 542, 650
RsaNI GTAC 2 cut(s) 541, 649
SalI GTCGAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 1230
SatI GCNGC 4 cut(s) 876, 915, 1160, 1170
Sau96I GGNCC 2 cut(s) 234, 352
SchI GAGTC 4 cut(s) 104, 166, 932, 965
ScrFI CCNGG 7 cut(s) 92, 142, 215, 266, 300, 356, 615
SduI GDGCHC 1 cut(s) 36
SfaNI GCATC 1 cut(s) 1038
SfcI CTRYAG 1 cut(s) 834
Sfr274I CTCGAG 2 cut(s) 221, 308
SinI GGWCC 1 cut(s) 234
SlaI CTCGAG 2 cut(s) 221, 308
SmlI CTYRAG 2 cut(s) 221, 308
SmoI CTYRAG 2 cut(s) 221, 308
Sse9I AATT 6 cut(s) 4, 130, 457, 562, 714, 1147
SsiI CCGC 5 cut(s) 53, 211, 257, 725, 1159
SspMI CTAG 1 cut(s) 645
StyD4I CCNGG 7 cut(s) 90, 140, 213, 264, 298, 354, 613
TaaI ACNGT 5 cut(s) 349, 382, 416, 545, 835
TaqII GACCGA 1 cut(s) 7
TasI AATT 6 cut(s) 4, 130, 457, 562, 714, 1147
TatI WGTACW 1 cut(s) 540
TauI GCSGC 1 cut(s) 1162
TfiI GAWTC 4 cut(s) 335, 449, 706, 1001
Tru1I TTAA 1 cut(s) 1230
Tru9I TTAA 1 cut(s) 1230
TscAI CASTG 3 cut(s) 526, 1138, 1171
TseFI GTSAC 2 cut(s) 887, 1222
TseI GCWGC 3 cut(s) 875, 914, 1169
Tsp45I GTSAC 2 cut(s) 887, 1222
TspDTI ATGAA 3 cut(s) 17, 215, 1227
TspGWI ACGGA 3 cut(s) 184, 413, 1004
TspRI CASTG 3 cut(s) 526, 1138, 1171
Tth111I GACNNNGTC 2 cut(s) 77, 184
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 4 cut(s) 4, 130, 562, 1147
XhoI CTCGAG 2 cut(s) 221, 308
XmiI GTMKAC 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.