Prupe.1G148100_v2.0.a1

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013483
Physical Location & Seq
Forward (+)
11616106 .. 11617804
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G148100.1

Sequence Viewer

Length: 1323 bp
ATGGATTTCTTCAAGTCCGTCTTCTCCGACGACCCGATTCCCTCCGACGATTCACACACGGACACCCAAAACGACGACGACCCGAACCCGGTACCGGAATCGGACCACAGCCCGCCTCCGAATTCTGGTACCGGGGCGTGGAGCTTCGGAGGTCTGATCACGACTTTGGCCGCGAAATCTGAGTCCGTTATCCAGAACTATCGTCGCGATTTCGAGGAGTTTGGGTCTGGGTTGAGGGAGGAGACGGCGGTGATCCGGCAGGTGGCTTCACGCGCCGTCAAGGACCTTCCGGCTTCTCTCGAGGTCGGTGCGTCGGTGGCTCAGGAGTCGCTGGAGTCGGTGGGTCAGGCAATCGATGACATCGGGAGCACTGTGTGGAAATCGACGTCGGAGATAATTTCTCACGGTAGGGACGTAATCTTAGCTGATGATGTCGAATCTGATAATTTGGATGATAATGTTAATGATAATCGTGAGATTAGTGGTAATAAGCGATTGAGTAGCAGTGGTAGTGATTTGAGAAAGTACAGTAGGTTTGAAGCTCAAGTGCGTGCAATTCAGAGTAATATGAATACTTATTTGGAGGAGCCTGAGGATTTGGAAAGCTTTAGGAGTTGGACATTAGGGTTTGTTCTGGATGAGAAAGCAGAGGAGGTTGAGAATTTGATGAGGGAAAATGGAGTGATTGGTGAGATTTATGGGGAAATTGTGCCTGGTAAGGTTGACAATGAGAGCTTTTGGGTTAGGTACTTTTATAGGGTGCATAAGCTGACGGAAGTTGAGGAGGCGAGAGCTAAGCTTGTGAATCGAGCAATTTCCGGGGAGGAAGAGGATTTGAGTTGGGATTTTGATGATGATGAAGATGTGGAGAAGGAAGAGGGTAATGGTTCGGGTTTGAAGGTTGGCACAAGTGGGACTGTGGAGTTGGAGAAGCAAAAGCAAGCTTCTTTTGAAGTTGCAAGGGGTAGTGATGATGTTGAGAGTGTTGAAATTGCTGCAAGGAAATCGGTGAGTAGTGACTGTGGGGATAAGGCAGAGGCAAAATTTGACGAGAATGGAGTGTCAGAGGGGAAGACGGATGGTGGTGATTCTTGCAAAGAGAGCGATGTTTCGATAGTTTCGAGCCAGCCCTCAATGCCTGAGGAAGAGGATCTTGGGTGGGATGAGATTGAAGATATTGGAAGTGGGGATGAAAACAAAGGGGATGCCCCGGGGAGCAGCACTAACAGAGTTGATTTGCAGAAGCGGCTCAGTACAGCAGAGGAAGAGGAGGATTTGAGCTGGGATATTGAAGATGATGAAGATGCGGCTATTAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

441

Amino Acids

48.3

Weight (kDa)

4.16

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13110
fragaria_vesca FvH4_4g14080
malus_domestica MD13G1179500.v1.1 MD16G1180600.v1.1
prunus_persica Prupe.1G148100_v2.0.a1
pyrus_communis pycom16g15160 pycom16g15170
rosa_chinensis RchiOBHm_Chr4g0419271
rosa_laevigata RLG00000007820
rosa_multiflora Rmu_co8252943.1_g000001 Rmu_sc0004932.1_g000005
rosa_roxburghii Rroxscaffold_5G00362260
rosa_rugosa Rorug04G0158000
rosa_samantha Rh4AG219700 Rh4BG221200 Rh4CG232500 Rh4DG218700
rosa_wichuraiana Rw4G018790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 250
AatII GACGTC 1 cut(s) 389
Acc36I ACCTGC 1 cut(s) 250
Acc65I GGTACC 2 cut(s) 91, 128
AccB1I GGYRCC 2 cut(s) 91, 128
AccII CGCG 3 cut(s) 173, 207, 273
AciI CCGC 5 cut(s) 113, 171, 248, 1246, 1307
AclWI GGATC 2 cut(s) 247, 1158
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 3 cut(s) 121, 661, 1043
AcyI GRCGYC 1 cut(s) 386
AdeI CACNNNGTG 1 cut(s) 375
AfaI GTAC 5 cut(s) 93, 130, 527, 749, 1255
AfiI CCNNNNNNNGG 5 cut(s) 88, 94, 125, 138, 262
AgsI TTSAA 7 cut(s) 13, 539, 898, 953, 989, 1172, 1292
AjnI CCWGG 1 cut(s) 712
AjuI GAANNNNNNNTTGG 4 cut(s) 563, 595, 1137, 1169
Alw21I GWGCWC 1 cut(s) 371
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 2 cut(s) 247, 1158
Ama87I CYCGRG 2 cut(s) 299, 1210
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 2 cut(s) 995, 1218
ApoI RAATTY 3 cut(s) 121, 661, 1043
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
Asp718I GGTACC 2 cut(s) 91, 128
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 2 cut(s) 103, 283
AsuC2I CCSGG 5 cut(s) 89, 133, 820, 1211, 1212
AsuHPI GGTGA 4 cut(s) 262, 701, 1021, 1097
AvaI CYCGRG 2 cut(s) 299, 1210
AvaII GGWCC 2 cut(s) 103, 283
AxyI CCTNAGG 2 cut(s) 591, 1140
BanI GGYRCC 2 cut(s) 91, 128
BbsI GAAGAC 2 cut(s) 13, 1079
Bbv12I GWGCWC 1 cut(s) 371
BbvI GCAGC 2 cut(s) 982, 1230
BccI CCATC 1 cut(s) 1073
BceAI ACGGC 2 cut(s) 260, 261
BcgI CGANNNNNNTGC 4 cut(s) 290, 324, 987, 1021
BciT130I CCWGG 1 cut(s) 714
BclI TGATCA 1 cut(s) 156
BcnI CCSGG 5 cut(s) 89, 133, 820, 1211, 1212
BcoDI GTCTC 1 cut(s) 236
BfuAI ACCTGC 1 cut(s) 250
BisI GCNGC 5 cut(s) 171, 996, 1219, 1247, 1308
BlpI GCTNAGC 1 cut(s) 795
BlsI GCNGC 5 cut(s) 172, 997, 1220, 1248, 1309
Bme1390I CCNGG 6 cut(s) 89, 133, 714, 820, 1211, 1212
Bme18I GGWCC 2 cut(s) 103, 283
BmeT110I CYCGRG 2 cut(s) 299, 1210
BmgT120I GGNCC 2 cut(s) 103, 283
BmiI GGNNCC 3 cut(s) 93, 130, 588
BmrFI CCNGG 6 cut(s) 89, 133, 714, 820, 1211, 1212
BmsI GCATC 2 cut(s) 1195, 1294
BpiI GAAGAC 2 cut(s) 13, 1079
BpmI CTGGAG 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 321
Bpu1102I GCTNAGC 1 cut(s) 795
BpuEI CTTGAG 1 cut(s) 528
BpuMI CCSGG 5 cut(s) 89, 133, 820, 1211, 1212
Bsa29I ATCGAT 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 386
BsaJI CCNNGG 5 cut(s) 132, 819, 1209, 1210, 1211
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 94, 125, 138, 262
Bse21I CCTNAGG 2 cut(s) 591, 1140
BseBI CCWGG 1 cut(s) 714
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 5 cut(s) 132, 819, 1209, 1210, 1211
BseGI GGATG 6 cut(s) 457, 643, 1084, 1168, 1195, 1210
BseLI CCNNNNNNNGG 5 cut(s) 88, 94, 125, 138, 262
BseMII CTCAG 5 cut(s) 171, 335, 582, 1131, 1264
BseRI GAGGAG 6 cut(s) 230, 254, 599, 665, 797, 1283
BseXI GCAGC 2 cut(s) 982, 1230
BseYI CCCAGC 1 cut(s) 1281
Bsh1236I CGCG 3 cut(s) 173, 207, 273
BshFI GGCC 1 cut(s) 170
BshNI GGYRCC 2 cut(s) 91, 128
BshVI ATCGAT 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 371
BsiHKCI CYCGRG 2 cut(s) 299, 1210
BsiSI CCGG 7 cut(s) 89, 95, 132, 256, 290, 819, 1211
BslFI GGGAC 2 cut(s) 425, 928
BslI CCNNNNNNNGG 5 cut(s) 88, 94, 125, 138, 262
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
BsmFI GGGAC 2 cut(s) 425, 928
BsnI GGCC 1 cut(s) 170
BsoBI CYCGRG 2 cut(s) 299, 1210
Bsp1286I GDGCHC 1 cut(s) 371
Bsp143I GATC 3 cut(s) 156, 252, 1150
Bsp1720I GCTNAGC 1 cut(s) 795
Bsp68I TCGCGA 1 cut(s) 207
BspACI CCGC 5 cut(s) 113, 171, 248, 1246, 1307
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 5 cut(s) 172, 334, 583, 1132, 1263
BspDI ATCGAT 1 cut(s) 354
BspFNI CGCG 3 cut(s) 173, 207, 273
BspHI TCATGA 1 cut(s) 1319
BspLI GGNNCC 3 cut(s) 93, 130, 588
BspMI ACCTGC 1 cut(s) 250
BspPI GGATC 2 cut(s) 247, 1158
BspT107I GGYRCC 2 cut(s) 91, 128
BssECI CCNNGG 5 cut(s) 132, 819, 1209, 1210, 1211
BssMI GATC 3 cut(s) 156, 252, 1150
BssNI GRCGYC 1 cut(s) 386
Bst2UI CCWGG 1 cut(s) 714
Bst4CI ACNGT 5 cut(s) 373, 407, 530, 919, 1022
Bst6I CTCTTC 4 cut(s) 822, 870, 1140, 1260
BstACI GRCGYC 1 cut(s) 386
BstC8I GCNNGC 4 cut(s) 113, 552, 942, 1127
BstDEI CTNAG 7 cut(s) 180, 321, 421, 591, 795, 1140, 1250
BstF5I GGATG 6 cut(s) 457, 643, 1084, 1168, 1195, 1210
BstFNI CGCG 3 cut(s) 173, 207, 273
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 3 cut(s) 159, 255, 1153
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 3 cut(s) 156, 252, 1150
BstMWI GCNNNNNNNGC 5 cut(s) 272, 317, 1101, 1135, 1246
BstNI CCWGG 1 cut(s) 714
BstSCI CCNGG 6 cut(s) 87, 131, 712, 818, 1209, 1210
BstUI CGCG 3 cut(s) 173, 207, 273
BstV1I GCAGC 2 cut(s) 982, 1230
BstV2I GAAGAC 2 cut(s) 13, 1079
BstX2I RGATCY 1 cut(s) 1150
BstYI RGATCY 1 cut(s) 1150
Bsu15I ATCGAT 1 cut(s) 354
Bsu36I CCTNAGG 2 cut(s) 591, 1140
BsuRI GGCC 1 cut(s) 170
BsuTUI ATCGAT 1 cut(s) 354
BtgZI GCGATG 1 cut(s) 1119
BtsCI GGATG 6 cut(s) 457, 643, 1084, 1168, 1195, 1210
BtsI GCAGTG 1 cut(s) 511
BtsIMutI CAGTG 2 cut(s) 369, 511
BtuMI TCGCGA 1 cut(s) 207
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 4 cut(s) 113, 552, 942, 1127
CciI TCATGA 1 cut(s) 1319
CfoI GCGC 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 103, 283
Cfr9I CCCGGG 1 cut(s) 1210
ClaI ATCGAT 1 cut(s) 354
CseI GACGC 1 cut(s) 300
Csp6I GTAC 5 cut(s) 92, 129, 526, 748, 1254
CviAII CATG 1 cut(s) 1320
CviQI GTAC 5 cut(s) 92, 129, 526, 748, 1254
DdeI CTNAG 7 cut(s) 180, 321, 421, 591, 795, 1140, 1250
DpnI GATC 3 cut(s) 158, 254, 1152
DpnII GATC 3 cut(s) 156, 252, 1150
DraIII CACNNNGTG 1 cut(s) 375
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 4 cut(s) 822, 870, 1140, 1260
EarI CTCTTC 4 cut(s) 822, 870, 1140, 1260
Eco47I GGWCC 2 cut(s) 103, 283
Eco81I CCTNAGG 2 cut(s) 591, 1140
Eco88I CYCGRG 2 cut(s) 299, 1210
EcoO109I RGGNCCY 1 cut(s) 283
EcoRI GAATTC 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 712
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 1 cut(s) 1323
FaiI YATR 5 cut(s) 569, 699, 756, 765, 1321
FalI AAGNNNNNCTT 3 cut(s) 37, 1137, 1169
FaqI GGGAC 2 cut(s) 425, 928
FatI CATG 1 cut(s) 1319
FauI CCCGC 1 cut(s) 120
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 5 cut(s) 171, 996, 1219, 1247, 1308
FokI GGATG 6 cut(s) 464, 650, 1091, 1175, 1202, 1217
Fsp4HI GCNGC 5 cut(s) 171, 996, 1219, 1247, 1308
GlaI GCGC 1 cut(s) 274
GluI GCNGC 5 cut(s) 171, 996, 1219, 1247, 1308
GsaI CCCAGC 1 cut(s) 1285
GsuI CTGGAG 1 cut(s) 353
HaeIII GGCC 1 cut(s) 170
HapII CCGG 7 cut(s) 89, 95, 132, 256, 290, 819, 1211
HgaI GACGC 1 cut(s) 300
HhaI GCGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 386
Hin1II CATG 1 cut(s) 1323
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HincII GTYRAC 1 cut(s) 724
HindII GTYRAC 1 cut(s) 724
HindIII AAGCTT 3 cut(s) 604, 797, 942
HinfI GANTC 9 cut(s) 37, 50, 98, 182, 326, 335, 437, 805, 1088
HpaII CCGG 7 cut(s) 89, 95, 132, 256, 290, 819, 1211
HphI GGTGA 4 cut(s) 262, 701, 1021, 1097
Hpy166II GTNNAC 1 cut(s) 724
Hpy188III TCNNGA 9 cut(s) 160, 193, 206, 299, 323, 364, 473, 635, 1320
Hpy8I GTNNAC 1 cut(s) 724
Hpy99I CGWCG 8 cut(s) 32, 50, 77, 80, 207, 316, 388, 391
HpyAV CCTTC 3 cut(s) 296, 865, 892
HpyCH4III ACNGT 5 cut(s) 373, 407, 530, 919, 1022
HpyCH4IV ACGT 2 cut(s) 386, 414
HpyCH4V TGCA 6 cut(s) 554, 763, 959, 998, 1095, 1240
HpyF10VI GCNNNNNNNGC 5 cut(s) 272, 317, 1101, 1135, 1246
HpyF3I CTNAG 7 cut(s) 180, 321, 421, 591, 795, 1140, 1250
HpySE526I ACGT 2 cut(s) 386, 414
Hsp92I GRCGYC 1 cut(s) 386
Hsp92II CATG 1 cut(s) 1323
HspAI GCGC 1 cut(s) 273
KpnI GGTACC 2 cut(s) 95, 132
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 3 cut(s) 156, 252, 1150
LmnI GCTCC 4 cut(s) 141, 366, 586, 1215
Lsp1109I GCAGC 2 cut(s) 982, 1230
LweI GCATC 2 cut(s) 1195, 1294
MaeII ACGT 2 cut(s) 386, 414
MaeIII GTNAC 1 cut(s) 1016
MalI GATC 3 cut(s) 158, 254, 1152
MboI GATC 3 cut(s) 156, 252, 1150
MflI RGATCY 1 cut(s) 1150
MhlI GDGCHC 1 cut(s) 371
MluCI AATT 9 cut(s) 121, 396, 445, 555, 661, 705, 813, 990, 1043
MlyI GAGTC 3 cut(s) 191, 335, 344
MmeI TCCRAC 5 cut(s) 51, 69, 369, 596, 906
MseI TTAA 2 cut(s) 462, 1314
MspI CCGG 7 cut(s) 89, 95, 132, 256, 290, 819, 1211
MspR9I CCNGG 6 cut(s) 89, 133, 714, 820, 1211, 1212
MvaI CCWGG 1 cut(s) 714
MvnI CGCG 3 cut(s) 173, 207, 273
MwoI GCNNNNNNNGC 5 cut(s) 272, 317, 1101, 1135, 1246
NciI CCSGG 5 cut(s) 89, 133, 820, 1211, 1212
NdeII GATC 3 cut(s) 156, 252, 1150
NlaIII CATG 1 cut(s) 1323
NlaIV GGNNCC 3 cut(s) 93, 130, 588
NmuCI GTSAC 1 cut(s) 1016
NruI TCGCGA 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 299
PagI TCATGA 1 cut(s) 1319
PaqCI CACCTGC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 2 cut(s) 411, 1118
PfeI GAWTC 6 cut(s) 37, 50, 98, 437, 805, 1088
PkrI GCNGC 5 cut(s) 172, 997, 1220, 1248, 1309
PleI GAGTC 3 cut(s) 190, 334, 343
PpsI GAGTC 3 cut(s) 190, 334, 343
PpuMI RGGWCCY 1 cut(s) 283
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 712
PspFI CCCAGC 1 cut(s) 1281
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 3 cut(s) 93, 130, 588
PspPI GGNCC 2 cut(s) 103, 283
PspPPI RGGWCCY 1 cut(s) 283
PsuI RGATCY 1 cut(s) 1150
RruI TCGCGA 1 cut(s) 207
RsaI GTAC 5 cut(s) 93, 130, 527, 749, 1255
RsaNI GTAC 5 cut(s) 92, 129, 526, 748, 1254
SaqAI TTAA 2 cut(s) 462, 1314
SatI GCNGC 5 cut(s) 171, 996, 1219, 1247, 1308
Sau3AI GATC 3 cut(s) 156, 252, 1150
Sau96I GGNCC 2 cut(s) 103, 283
SchI GAGTC 3 cut(s) 191, 335, 344
ScrFI CCNGG 6 cut(s) 89, 133, 714, 820, 1211, 1212
SduI GDGCHC 1 cut(s) 371
SfaNI GCATC 2 cut(s) 1195, 1294
Sfr274I CTCGAG 1 cut(s) 299
SinI GGWCC 2 cut(s) 103, 283
SlaI CTCGAG 1 cut(s) 299
SmaI CCCGGG 1 cut(s) 1212
SmlI CTYRAG 2 cut(s) 299, 543
SmoI CTYRAG 2 cut(s) 299, 543
Sse9I AATT 9 cut(s) 121, 396, 445, 555, 661, 705, 813, 990, 1043
SsiI CCGC 5 cut(s) 113, 171, 248, 1246, 1307
StyD4I CCNGG 6 cut(s) 87, 131, 712, 818, 1209, 1210
TaaI ACNGT 5 cut(s) 373, 407, 530, 919, 1022
TaiI ACGT 2 cut(s) 389, 417
TaqI TCGA 8 cut(s) 213, 300, 354, 383, 435, 808, 1112, 1121
TasI AATT 9 cut(s) 121, 396, 445, 555, 661, 705, 813, 990, 1043
TatI WGTACW 2 cut(s) 525, 1253
TauI GCSGC 3 cut(s) 173, 1249, 1310
TfiI GAWTC 6 cut(s) 37, 50, 98, 437, 805, 1088
Tru1I TTAA 2 cut(s) 462, 1314
Tru9I TTAA 2 cut(s) 462, 1314
TscAI CASTG 2 cut(s) 376, 511
TseFI GTSAC 1 cut(s) 1016
TseI GCWGC 2 cut(s) 995, 1218
Tsp45I GTSAC 1 cut(s) 1016
TspDTI ATGAA 4 cut(s) 584, 873, 1206, 1314
TspGWI ACGGA 5 cut(s) 7, 74, 175, 788, 1091
TspMI CCCGGG 1 cut(s) 1210
TspRI CASTG 2 cut(s) 376, 511
VpaK11BI GGWCC 2 cut(s) 103, 283
XapI RAATTY 3 cut(s) 121, 661, 1043
XhoI CTCGAG 1 cut(s) 299
XmaI CCCGGG 1 cut(s) 1210
ZraI GACGTC 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.