MD13G1179500.v1.1

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013483
Physical Location & Seq
Forward (+)
14959950 .. 14960603
654 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1179500.v1.1.491

Sequence Viewer

Length: 582 bp
ATGGATTTCTTTAAGTCGGTCTTCTCCGACGACCCCCTTCCCTCCGACGATCTGCACCCGGACGCCCAAAACGACGGCGGCCACCCGAACCCGGACTGGGAACCGGACCGCAGTCCGCGTCCGAATTACGGCGCCGGGGCGTGGAGCTTCGGAGGTCTGATCACGACTCTGGCGACGAAGTCCGAGTCTGTCATCCAGAACTACCGCCGCGATCTCGAGGAGTTCGGGTCCGGGTTGAAGAAGGAGACGGCGGTGATCCGGCAGGTGGCTTCGCGCGCCGTCAAGGATCTTCCTGGTTCGCTCGAGGTCGGCGCTTCGGTGGCTCAGGAGTCGCTGGAGACGGTGGGGCAGGCGATCGATGATATCGGAAGCACCGTCTGGAAATCGACGGCGAGGATCATCTCTCACGGTAGGGACGCAATCTTAGTTGATGATGATGTTGAATCTGATAATTTGGATGATAATGTTAGTGGTAATCGTGAGATTGGTGGTGATGATAAGAGATTAAGTAGCAGTGGTAGTGATTTGAGAAAGTACAGTAGGTTTGAAGCTCAGGTGCGTGCGGTTCAGACTGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

194

Amino Acids

20.92

Weight (kDa)

4.57

Isoelectric Point (pI)

29.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13110
fragaria_vesca FvH4_4g14080
malus_domestica MD13G1179500.v1.1 MD16G1180600.v1.1
prunus_persica Prupe.1G148100_v2.0.a1
pyrus_communis pycom16g15160 pycom16g15170
rosa_chinensis RchiOBHm_Chr4g0419271
rosa_laevigata RLG00000007820
rosa_multiflora Rmu_co8252943.1_g000001 Rmu_sc0004932.1_g000005
rosa_roxburghii Rroxscaffold_5G00362260
rosa_rugosa Rorug04G0158000
rosa_samantha Rh4AG219700 Rh4BG221200 Rh4CG232500 Rh4DG218700
rosa_wichuraiana Rw4G018790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 253
Acc36I ACCTGC 1 cut(s) 253
AccB1I GGYRCC 1 cut(s) 131
AccII CGCG 4 cut(s) 118, 210, 274, 276
AciI CCGC 7 cut(s) 78, 109, 116, 205, 208, 251, 563
AclWI GGATC 3 cut(s) 250, 294, 404
AcoI YGGCCR 1 cut(s) 79
AcyI GRCGYC 2 cut(s) 63, 132
AfaI GTAC 1 cut(s) 536
AfiI CCNNNNNNNGG 5 cut(s) 91, 97, 128, 141, 265
AgsI TTSAA 3 cut(s) 238, 443, 548
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 2 cut(s) 147, 551
AluI AGCT 2 cut(s) 147, 551
Alw26I GTCTC 2 cut(s) 239, 332
AlwI GGATC 3 cut(s) 250, 294, 404
Ama87I CYCGRG 2 cut(s) 215, 302
AoxI GGCC 1 cut(s) 79
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspLEI GCGC 4 cut(s) 134, 276, 278, 314
AspS9I GGNCC 2 cut(s) 106, 228
AsuC2I CCSGG 4 cut(s) 59, 92, 136, 232
AsuHPI GGTGA 2 cut(s) 265, 503
AvaI CYCGRG 2 cut(s) 215, 302
AvaII GGWCC 2 cut(s) 106, 228
BanI GGYRCC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 13
BceAI ACGGC 5 cut(s) 91, 145, 263, 264, 405
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 159
BcnI CCSGG 4 cut(s) 59, 92, 136, 232
BcoDI GTCTC 2 cut(s) 239, 332
BfoI RGCGCY 2 cut(s) 135, 315
BfuAI ACCTGC 1 cut(s) 253
BisI GCNGC 2 cut(s) 79, 208
BlsI GCNGC 2 cut(s) 80, 209
Bme1390I CCNGG 5 cut(s) 59, 92, 136, 232, 294
Bme18I GGWCC 2 cut(s) 106, 228
BmeT110I CYCGRG 2 cut(s) 215, 302
BmgT120I GGNCC 2 cut(s) 106, 228
BmiI GGNNCC 3 cut(s) 102, 133, 229
BmrFI CCNGG 5 cut(s) 59, 92, 136, 232, 294
BmrI ACTGGG 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 106
BoxI GACNNNNGTC 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 13
BpmI CTGGAG 1 cut(s) 356
Bpu10I CCTNAGC 2 cut(s) 324, 552
BpuMI CCSGG 4 cut(s) 59, 92, 136, 232
Bsa29I ATCGAT 1 cut(s) 357
BsaHI GRCGYC 2 cut(s) 63, 132
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 103
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 5 cut(s) 91, 97, 128, 141, 265
Bse1I ACTGG 2 cut(s) 101, 577
BseBI CCWGG 1 cut(s) 294
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 2 cut(s) 192, 463
BseLI CCNNNNNNNGG 5 cut(s) 91, 97, 128, 141, 265
BseMII CTCAG 2 cut(s) 338, 566
BseNI ACTGG 2 cut(s) 101, 577
BsePI GCGCGC 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 233
BsgI GTGCAG 1 cut(s) 38
Bsh1236I CGCG 4 cut(s) 118, 210, 274, 276
Bsh1285I CGRYCG 1 cut(s) 357
BshFI GGCC 1 cut(s) 81
BshNI GGYRCC 1 cut(s) 131
BshVI ATCGAT 1 cut(s) 357
BsiEI CGRYCG 1 cut(s) 357
BsiHKCI CYCGRG 2 cut(s) 215, 302
BsiSI CCGG 6 cut(s) 59, 92, 104, 135, 231, 259
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 5 cut(s) 91, 97, 128, 141, 265
BsmAI GTCTC 2 cut(s) 239, 332
BsmBI CGTCTC 2 cut(s) 239, 332
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 1 cut(s) 81
BsoBI CYCGRG 2 cut(s) 215, 302
Bsp143I GATC 7 cut(s) 49, 159, 211, 255, 286, 354, 396
BspACI CCGC 7 cut(s) 78, 109, 116, 205, 208, 251, 563
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 337, 565
BspDI ATCGAT 1 cut(s) 357
BspFNI CGCG 4 cut(s) 118, 210, 274, 276
BspLI GGNNCC 3 cut(s) 102, 133, 229
BspMI ACCTGC 1 cut(s) 253
BspPI GGATC 3 cut(s) 250, 294, 404
BspT107I GGYRCC 1 cut(s) 131
BsrI ACTGG 2 cut(s) 101, 577
BssECI CCNNGG 1 cut(s) 135
BssHII GCGCGC 1 cut(s) 274
BssMI GATC 7 cut(s) 49, 159, 211, 255, 286, 354, 396
BssNI GRCGYC 2 cut(s) 63, 132
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 4 cut(s) 343, 376, 410, 539
BstACI GRCGYC 2 cut(s) 63, 132
BstC8I GCNNGC 3 cut(s) 276, 351, 561
BstDEI CTNAG 3 cut(s) 324, 424, 552
BstF5I GGATG 2 cut(s) 192, 463
BstFNI CGCG 4 cut(s) 118, 210, 274, 276
BstH2I RGCGCY 2 cut(s) 135, 315
BstHHI GCGC 4 cut(s) 134, 276, 278, 314
BstKTI GATC 7 cut(s) 52, 162, 214, 258, 289, 357, 399
BstMAI GTCTC 2 cut(s) 239, 332
BstMBI GATC 7 cut(s) 49, 159, 211, 255, 286, 354, 396
BstMCI CGRYCG 1 cut(s) 357
BstMWI GCNNNNNNNGC 2 cut(s) 275, 320
BstNI CCWGG 1 cut(s) 294
BstPAI GACNNNNGTC 1 cut(s) 111
BstSCI CCNGG 5 cut(s) 57, 90, 134, 230, 292
BstUI CGCG 4 cut(s) 118, 210, 274, 276
BstV2I GAAGAC 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
Bsu15I ATCGAT 1 cut(s) 357
BsuRI GGCC 1 cut(s) 81
BsuTUI ATCGAT 1 cut(s) 357
BtsCI GGATG 2 cut(s) 192, 463
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 1 cut(s) 520
BveI ACCTGC 1 cut(s) 253
Cac8I GCNNGC 3 cut(s) 276, 351, 561
CfoI GCGC 4 cut(s) 134, 276, 278, 314
Cfr13I GGNCC 2 cut(s) 106, 228
ClaI ATCGAT 1 cut(s) 357
CpoI CGGWCCG 1 cut(s) 106
CseI GACGC 3 cut(s) 71, 107, 425
Csp6I GTAC 1 cut(s) 535
CspI CGGWCCG 1 cut(s) 106
CviJI RGCY 5 cut(s) 81, 147, 269, 323, 551
CviKI_1 RGCY 5 cut(s) 81, 147, 269, 323, 551
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 3 cut(s) 324, 424, 552
DinI GGCGCC 1 cut(s) 133
DpnI GATC 7 cut(s) 51, 161, 213, 257, 288, 356, 398
DpnII GATC 7 cut(s) 49, 159, 211, 255, 286, 354, 396
EaeI YGGCCR 1 cut(s) 79
Eco32I GATATC 1 cut(s) 364
Eco47I GGWCC 2 cut(s) 106, 228
Eco88I CYCGRG 2 cut(s) 215, 302
EcoRII CCWGG 1 cut(s) 292
EcoRV GATATC 1 cut(s) 364
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
Esp3I CGTCTC 2 cut(s) 239, 332
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 428
FbaI TGATCA 1 cut(s) 159
Fnu4HI GCNGC 2 cut(s) 79, 208
FokI GGATG 2 cut(s) 179, 470
Fsp4HI GCNGC 2 cut(s) 79, 208
GlaI GCGC 4 cut(s) 133, 275, 277, 313
GluI GCNGC 2 cut(s) 79, 208
GsuI CTGGAG 1 cut(s) 356
HaeII RGCGCY 2 cut(s) 135, 315
HaeIII GGCC 1 cut(s) 81
HapII CCGG 6 cut(s) 59, 92, 104, 135, 231, 259
HgaI GACGC 3 cut(s) 71, 107, 425
HhaI GCGC 4 cut(s) 134, 276, 278, 314
Hin1I GRCGYC 2 cut(s) 63, 132
Hin6I GCGC 4 cut(s) 132, 274, 276, 312
HinP1I GCGC 4 cut(s) 132, 274, 276, 312
HinfI GANTC 4 cut(s) 166, 185, 329, 443
HpaII CCGG 6 cut(s) 59, 92, 104, 135, 231, 259
HphI GGTGA 2 cut(s) 265, 503
Hpy188I TCNGA 9 cut(s) 28, 46, 123, 152, 159, 184, 368, 448, 570
Hpy188III TCNNGA 6 cut(s) 163, 196, 215, 326, 379, 479
Hpy99I CGWCG 5 cut(s) 32, 50, 77, 178, 391
HpyAV CCTTC 2 cut(s) 47, 235
HpyCH4III ACNGT 4 cut(s) 343, 376, 410, 539
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 320
HpyF3I CTNAG 3 cut(s) 324, 424, 552
Hsp92I GRCGYC 2 cut(s) 63, 132
HspAI GCGC 4 cut(s) 132, 274, 276, 312
KasI GGCGCC 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 7 cut(s) 49, 159, 211, 255, 286, 354, 396
LmnI GCTCC 1 cut(s) 144
MalI GATC 7 cut(s) 51, 161, 213, 257, 288, 356, 398
MboI GATC 7 cut(s) 49, 159, 211, 255, 286, 354, 396
MboII GAAGA 3 cut(s) 13, 250, 281
MflI RGATCY 1 cut(s) 286
MluCI AATT 3 cut(s) 124, 451, 577
Mly113I GGCGCC 1 cut(s) 132
MlyI GAGTC 3 cut(s) 160, 194, 338
MmeI TCCRAC 2 cut(s) 51, 69
MnlI CCTC 5 cut(s) 52, 146, 211, 298, 387
MseI TTAA 2 cut(s) 12, 506
MspI CCGG 6 cut(s) 59, 92, 104, 135, 231, 259
MspR9I CCNGG 5 cut(s) 59, 92, 136, 232, 294
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 4 cut(s) 118, 210, 274, 276
MwoI GCNNNNNNNGC 2 cut(s) 275, 320
NarI GGCGCC 1 cut(s) 132
NciI CCSGG 4 cut(s) 59, 92, 136, 232
NdeII GATC 7 cut(s) 49, 159, 211, 255, 286, 354, 396
NlaIV GGNNCC 3 cut(s) 102, 133, 229
PaeR7I CTCGAG 2 cut(s) 215, 302
PaqCI CACCTGC 1 cut(s) 253
PauI GCGCGC 1 cut(s) 274
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 170, 372
PfeI GAWTC 1 cut(s) 443
PflFI GACNNNGTC 1 cut(s) 178
PkrI GCNGC 2 cut(s) 80, 209
Ple19I CGATCG 1 cut(s) 357
PleI GAGTC 3 cut(s) 160, 193, 337
PluTI GGCGCC 1 cut(s) 135
PpsI GAGTC 3 cut(s) 160, 193, 337
PshAI GACNNNNGTC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 3 cut(s) 102, 133, 229
PspPI GGNCC 2 cut(s) 106, 228
PspXI VCTCGAGB 1 cut(s) 302
PsuI RGATCY 1 cut(s) 286
PsyI GACNNNGTC 1 cut(s) 178
PteI GCGCGC 1 cut(s) 274
PvuI CGATCG 1 cut(s) 357
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
Rsr2I CGGWCCG 1 cut(s) 106
RsrII CGGWCCG 1 cut(s) 106
SaqAI TTAA 2 cut(s) 12, 506
SatI GCNGC 2 cut(s) 79, 208
Sau3AI GATC 7 cut(s) 49, 159, 211, 255, 286, 354, 396
Sau96I GGNCC 2 cut(s) 106, 228
SchI GAGTC 3 cut(s) 160, 194, 338
ScrFI CCNGG 5 cut(s) 59, 92, 136, 232, 294
SetI ASST 7 cut(s) 149, 157, 267, 309, 545, 553, 558
SfoI GGCGCC 1 cut(s) 133
Sfr274I CTCGAG 2 cut(s) 215, 302
SinI GGWCC 2 cut(s) 106, 228
SlaI CTCGAG 2 cut(s) 215, 302
SmlI CTYRAG 2 cut(s) 215, 302
SmoI CTYRAG 2 cut(s) 215, 302
Sse9I AATT 3 cut(s) 124, 451, 577
SsiI CCGC 7 cut(s) 78, 109, 116, 205, 208, 251, 563
SspDI GGCGCC 1 cut(s) 131
StyD4I CCNGG 5 cut(s) 57, 90, 134, 230, 292
TaaI ACNGT 4 cut(s) 343, 376, 410, 539
TaqI TCGA 4 cut(s) 216, 303, 357, 386
TaqII GACCGA 1 cut(s) 7
TasI AATT 3 cut(s) 124, 451, 577
TatI WGTACW 1 cut(s) 534
TauI GCSGC 2 cut(s) 81, 210
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 2 cut(s) 12, 506
Tru9I TTAA 2 cut(s) 12, 506
TscAI CASTG 1 cut(s) 520
TspRI CASTG 1 cut(s) 520
Tth111I GACNNNGTC 1 cut(s) 178
VpaK11BI GGWCC 2 cut(s) 106, 228
XhoI CTCGAG 2 cut(s) 215, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.