Rmu_sc0004932.1_g000005

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004932.1
OG0013483
Physical Location & Seq
Reverse (-)
14976 .. 15482
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004932.1_g000005.1.cds

Sequence Viewer

Length: 507 bp
atggatttcttcaagtccgtcttctccgacgatcccgatccctccgacgacgactctaactcactcgcccaaaacgacgccgtcgccgcgagccccgaaccggagcaaagtccgcaaccgaactccggcaccggcgcgtggagcttcgggggtctgatgacgaccctggcgacgaggtccgagtcggtgctgcagacctaccgccgcgatctcgcggagctcgggtccgggctgaagaaggagacggcggtgatccgggaggtggcgtcacgcgccgtgaaggagctccctgctaagctggatgtcggcgcgtcggtggcgcaggtgtcgctggagtcggtcgggcaggcgatcgacgacatcggaagcagcgtgtggaagtcgacggcggagatcatctctcacggtagggaagctatggctgatgatattgaatctgattataattctgaaactaatgctagtgagaggagattgagtagcagtggtagtgatttgaggaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

168

Amino Acids

17.9

Weight (kDa)

4.39

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13110
fragaria_vesca FvH4_4g14080
malus_domestica MD13G1179500.v1.1 MD16G1180600.v1.1
prunus_persica Prupe.1G148100_v2.0.a1
pyrus_communis pycom16g15160 pycom16g15170
rosa_chinensis RchiOBHm_Chr4g0419271
rosa_laevigata RLG00000007820
rosa_multiflora Rmu_co8252943.1_g000001 Rmu_sc0004932.1_g000005
rosa_roxburghii Rroxscaffold_5G00362260
rosa_rugosa Rorug04G0158000
rosa_samantha Rh4AG219700 Rh4BG221200 Rh4CG232500 Rh4DG218700
rosa_wichuraiana Rw4G018790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AarI CACCTGC 1 cut(s) 313
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 383
AccII CGCG 6 cut(s) 89, 137, 207, 215, 273, 311
AciI CCGC 7 cut(s) 87, 113, 202, 205, 215, 248, 389
AclWI GGATC 3 cut(s) 26, 32, 247
AcuI CTGAAG 1 cut(s) 254
AcyI GRCGYC 2 cut(s) 78, 266
AfiI CCNNNNNNNGG 4 cut(s) 100, 125, 138, 262
AgsI TTSAA 2 cut(s) 13, 434
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 5 cut(s) 144, 220, 286, 298, 416
AluI AGCT 5 cut(s) 144, 220, 286, 298, 416
Alw21I GWGCWC 2 cut(s) 222, 288
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 3 cut(s) 26, 32, 247
Ama87I CYCGRG 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 190, 369
AspLEI GCGC 4 cut(s) 137, 275, 311, 322
AspS9I GGNCC 2 cut(s) 177, 225
AsuC2I CCSGG 2 cut(s) 229, 257
AsuHPI GGTGA 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 2 cut(s) 177, 225
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 3 cut(s) 95, 222, 288
BbsI GAAGAC 1 cut(s) 13
Bbv12I GWGCWC 2 cut(s) 222, 288
BbvI GCAGC 2 cut(s) 177, 381
BceAI ACGGC 4 cut(s) 65, 260, 261, 402
BciT130I CCWGG 1 cut(s) 167
BcnI CCSGG 2 cut(s) 229, 257
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 1 cut(s) 462
BfmI CTRYAG 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 4 cut(s) 87, 191, 205, 370
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 4 cut(s) 88, 192, 206, 371
Bme1390I CCNGG 3 cut(s) 167, 229, 257
Bme18I GGWCC 2 cut(s) 177, 225
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 177, 225
BmiI GGNNCC 2 cut(s) 130, 226
BmrFI CCNGG 3 cut(s) 167, 229, 257
BpiI GAAGAC 1 cut(s) 13
BplI GAGNNNNNCTC 2 cut(s) 383, 415
BpmI CTGGAG 1 cut(s) 353
Bpu1102I GCTNAGC 1 cut(s) 294
BpuMI CCSGG 2 cut(s) 229, 257
BsaBI GATNNNNATC 1 cut(s) 36
BsaHI GRCGYC 2 cut(s) 78, 266
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 6 cut(s) 209, 239, 251, 281, 463, 493
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 125, 138, 262
Bse118I RCCGGY 1 cut(s) 131
Bse8I GATNNNNATC 1 cut(s) 36
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 4 cut(s) 100, 125, 138, 262
BseRI GAGGAG 1 cut(s) 484
BseXI GCAGC 2 cut(s) 177, 381
Bsh1236I CGCG 6 cut(s) 89, 137, 207, 215, 273, 311
Bsh1285I CGRYCG 2 cut(s) 342, 354
BshNI GGYRCC 1 cut(s) 128
BsiEI CGRYCG 2 cut(s) 342, 354
BsiHKAI GWGCWC 2 cut(s) 222, 288
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 5 cut(s) 101, 126, 132, 228, 256
BslI CCNNNNNNNGG 4 cut(s) 100, 125, 138, 262
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 3 cut(s) 95, 222, 288
Bsp143I GATC 6 cut(s) 31, 37, 208, 252, 351, 393
Bsp1720I GCTNAGC 1 cut(s) 294
BspACI CCGC 7 cut(s) 87, 113, 202, 205, 215, 248, 389
BspFNI CGCG 6 cut(s) 89, 137, 207, 215, 273, 311
BspLI GGNNCC 2 cut(s) 130, 226
BspMAI CTGCAG 1 cut(s) 195
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 3 cut(s) 26, 32, 247
BspT107I GGYRCC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 6 cut(s) 31, 37, 208, 252, 351, 393
BssNI GRCGYC 2 cut(s) 78, 266
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 407
BstACI GRCGYC 2 cut(s) 78, 266
BstC8I GCNNGC 2 cut(s) 91, 348
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 6 cut(s) 89, 137, 207, 215, 273, 311
BstHHI GCGC 4 cut(s) 137, 275, 311, 322
BstKTI GATC 6 cut(s) 34, 40, 211, 255, 354, 396
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 6 cut(s) 31, 37, 208, 252, 351, 393
BstMCI CGRYCG 2 cut(s) 342, 354
BstMWI GCNNNNNNNGC 6 cut(s) 86, 112, 141, 272, 317, 328
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 3 cut(s) 165, 227, 255
BstSFI CTRYAG 1 cut(s) 191
BstUI CGCG 6 cut(s) 89, 137, 207, 215, 273, 311
BstV1I GCAGC 2 cut(s) 177, 381
BstV2I GAAGAC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 1 cut(s) 490
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 91, 348
CfoI GCGC 4 cut(s) 137, 275, 311, 322
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 177, 225
CseI GACGC 3 cut(s) 86, 255, 300
CviJI RGCY 8 cut(s) 93, 144, 220, 232, 286, 298, 416, 422
CviKI_1 RGCY 8 cut(s) 93, 144, 220, 232, 286, 298, 416, 422
DdeI CTNAG 1 cut(s) 294
DpnI GATC 6 cut(s) 33, 39, 210, 254, 353, 395
DpnII GATC 6 cut(s) 31, 37, 208, 252, 351, 393
EciI GGCGGA 1 cut(s) 404
Ecl136II GAGCTC 2 cut(s) 220, 286
Eco24I GRGCYC 3 cut(s) 95, 222, 288
Eco47I GGWCC 2 cut(s) 177, 225
Eco53kI GAGCTC 2 cut(s) 220, 286
Eco57I CTGAAG 1 cut(s) 254
Eco88I CYCGRG 1 cut(s) 221
EcoICRI GAGCTC 2 cut(s) 220, 286
EcoRII CCWGG 1 cut(s) 165
EcoT38I GRGCYC 3 cut(s) 95, 222, 288
Esp3I CGTCTC 1 cut(s) 236
FaiI YATR 2 cut(s) 419, 444
FalI AAGNNNNNCTT 1 cut(s) 37
FblI GTMKAC 1 cut(s) 383
Fnu4HI GCNGC 4 cut(s) 87, 191, 205, 370
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 3 cut(s) 95, 222, 288
Fsp4HI GCNGC 4 cut(s) 87, 191, 205, 370
FspBI CTAG 1 cut(s) 462
GlaI GCGC 4 cut(s) 136, 274, 310, 321
GluI GCNGC 4 cut(s) 87, 191, 205, 370
GsuI CTGGAG 1 cut(s) 353
HapII CCGG 5 cut(s) 101, 126, 132, 228, 256
HgaI GACGC 3 cut(s) 86, 255, 300
HhaI GCGC 4 cut(s) 137, 275, 311, 322
Hin1I GRCGYC 2 cut(s) 78, 266
Hin6I GCGC 4 cut(s) 135, 273, 309, 320
HinP1I GCGC 4 cut(s) 135, 273, 309, 320
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 4 cut(s) 53, 182, 335, 434
HpaII CCGG 5 cut(s) 101, 126, 132, 228, 256
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 384
Hpy188I TCNGA 7 cut(s) 28, 46, 156, 181, 365, 439, 451
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 1 cut(s) 384
Hpy99I CGWCG 9 cut(s) 32, 50, 53, 80, 86, 175, 316, 359, 388
HpyAV CCTTC 2 cut(s) 232, 274
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4V TGCA 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 6 cut(s) 86, 112, 141, 272, 317, 328
HpyF3I CTNAG 1 cut(s) 294
Hsp92I GRCGYC 2 cut(s) 78, 266
HspAI GCGC 4 cut(s) 135, 273, 309, 320
Kzo9I GATC 6 cut(s) 31, 37, 208, 252, 351, 393
LmnI GCTCC 5 cut(s) 103, 141, 217, 283, 291
Lsp1109I GCAGC 2 cut(s) 177, 381
MaeI CTAG 1 cut(s) 462
MaeIII GTNAC 1 cut(s) 267
MalI GATC 6 cut(s) 33, 39, 210, 254, 353, 395
MboI GATC 6 cut(s) 31, 37, 208, 252, 351, 393
MboII GAAGA 2 cut(s) 13, 247
MhlI GDGCHC 3 cut(s) 95, 222, 288
MluCI AATT 1 cut(s) 445
MlyI GAGTC 3 cut(s) 47, 191, 344
MmeI TCCRAC 2 cut(s) 51, 69
MnlI CCTC 6 cut(s) 52, 168, 253, 462, 492, 495
MspI CCGG 5 cut(s) 101, 126, 132, 228, 256
MspR9I CCNGG 3 cut(s) 167, 229, 257
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 6 cut(s) 89, 137, 207, 215, 273, 311
MwoI GCNNNNNNNGC 6 cut(s) 86, 112, 141, 272, 317, 328
NciI CCSGG 2 cut(s) 229, 257
NdeII GATC 6 cut(s) 31, 37, 208, 252, 351, 393
NlaIV GGNNCC 2 cut(s) 130, 226
NmuCI GTSAC 1 cut(s) 267
PaqCI CACCTGC 1 cut(s) 313
PcsI WCGNNNNNNNCGW 3 cut(s) 72, 167, 369
PfeI GAWTC 1 cut(s) 434
PflFI GACNNNGTC 2 cut(s) 80, 175
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 4 cut(s) 88, 192, 206, 371
Ple19I CGATCG 1 cut(s) 354
PleI GAGTC 3 cut(s) 47, 190, 343
PpsI GAGTC 3 cut(s) 47, 190, 343
PsiI TTATAA 1 cut(s) 444
Psp124BI GAGCTC 2 cut(s) 222, 288
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 130, 226
PspPI GGNCC 2 cut(s) 177, 225
PstI CTGCAG 1 cut(s) 195
PsyI GACNNNGTC 2 cut(s) 80, 175
PvuI CGATCG 1 cut(s) 354
SacI GAGCTC 2 cut(s) 222, 288
SalI GTCGAC 1 cut(s) 382
SatI GCNGC 4 cut(s) 87, 191, 205, 370
Sau3AI GATC 6 cut(s) 31, 37, 208, 252, 351, 393
Sau96I GGNCC 2 cut(s) 177, 225
SchI GAGTC 3 cut(s) 47, 191, 344
ScrFI CCNGG 3 cut(s) 167, 229, 257
SduI GDGCHC 3 cut(s) 95, 222, 288
SfcI CTRYAG 1 cut(s) 191
SgrAI CRCCGGYG 1 cut(s) 131
SinI GGWCC 2 cut(s) 177, 225
Sse9I AATT 1 cut(s) 445
SsiI CCGC 7 cut(s) 87, 113, 202, 205, 215, 248, 389
SspMI CTAG 1 cut(s) 462
SstI GAGCTC 2 cut(s) 222, 288
StyD4I CCNGG 3 cut(s) 165, 227, 255
TaaI ACNGT 1 cut(s) 407
TaqI TCGA 2 cut(s) 354, 383
TaqII GACCGA 1 cut(s) 328
TasI AATT 1 cut(s) 445
TauI GCSGC 2 cut(s) 89, 207
TfiI GAWTC 1 cut(s) 434
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 1 cut(s) 267
TseI GCWGC 2 cut(s) 190, 369
Tsp45I GTSAC 1 cut(s) 267
TspGWI ACGGA 1 cut(s) 7
TspRI CASTG 1 cut(s) 490
Tth111I GACNNNGTC 2 cut(s) 80, 175
VpaK11BI GGWCC 2 cut(s) 177, 225
XmiI GTMKAC 1 cut(s) 383
XspI CTAG 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.