Rroxscaffold_5G00362260

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013483
Physical Location & Seq
Reverse (-)
43161400 .. 43163142
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00362260.1

Sequence Viewer

Length: 1260 bp
ATGGATTTCTTCAAGTCGGTCTTCTCCGACGATCCCGATCCCTCCGACGACGACTCTAACTCACTCACCCAAAACGACGCCGTGGCGGCGAGCCACGACCCGGAGCAAAGTCCGCAACCGAACTCCGGTACCGGGGCGTGGAGCTTCGGGGGTCTGATGACGACCCTGGCGACGAGGTCCGAGTCGGTGCTGCAGACCTACCGCCGCGATCTCGCGGAGCTCGGGTCCGGGCTGAAGAAGGAGACGGCGGTGATCCGGGAGGTGGCGTCACGTGCCGTGAAGGAGCTCCCTGCTAAGCTGGATGTGGGCGCGTCGGTGGCGCAGGTGTCGCTGGAGTCGGTCGGGCAGGCGATCGACGACATCGGAAGCAGCGTGTGGAAGTCGACGGCGGAGATCATCTCTCACGGTAGGGAAGCTTTGGCTGATGATATTGAATCTGATTATAATTCTGAAAATAATGCTAGTGAGAGGAGATTGAGTAGCAGTGGTAGTGATTTGAGGAGGTATAGTAGGTTTGAAGTTCAGGTTAAGGCAATTCAGAGTAATATGTATACTTACTTGGAGGAACCGGAGGATTTGGAGAGCTATGGAGAGTGGAAATTAGGGTTTGTGTTGGAGGAGAAAGCAGAGGAAATTGAGAATTTGATCAAGGAAAATGGAGTGATTGGTGAGATTCATGAGGAAATTGTGCCTGCTAAGGTTGACAATGGGAGCTTTTGGAGTAGGTACTTTTATAGGGTGCATAAGTTGAAGGAAGTGGAGGATGCTAGAGCTAAGCTTGTGAAGCGAGCGATTTCCGGTGAAGAAGAGGATTTGAGTTGGGATTTCGATGACGATGAGGATGAGGAGGAGAAGAAGGAAGAGGGTGATGGGTTGGAGTCGGAGGCTGGTCCTAGTAGGAGTGTAGAGTTGGAGAAGGGAAACCAGAGTTCTGATGATGCAGTGGGTGTTGAAAGTGTGCCGAGGCAATCTGTAAGCAGTGACAAGTCAGAGGTGAAATCGGAGGGGAAGACGGATAGTGGCGATTCTTGCAAAGAGAGTGATATTTCGATTGTATCGAGCCAGCCGTCAATGCCAGGGGAAGAAGATCTAGGGTGGGATGAGATTGAAGATATTGGAAGCAGTGATGAGAAGAAAGGGGAGGCTGTTGGGAGCACGAGTAGAGTCGGTTTGCATAAGAGGCTTAGTGCTGCAGAGGAAGAGGAGGATTTGAGCTGGGATATCGAAGATGATGATGAAGATGATGCTATTAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

419

Amino Acids

46.05

Weight (kDa)

4.26

Isoelectric Point (pI)

59.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 199 - 255 1.2e-15 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13110
fragaria_vesca FvH4_4g14080
malus_domestica MD13G1179500.v1.1 MD16G1180600.v1.1
prunus_persica Prupe.1G148100_v2.0.a1
pyrus_communis pycom16g15160 pycom16g15170
rosa_chinensis RchiOBHm_Chr4g0419271
rosa_laevigata RLG00000007820
rosa_multiflora Rmu_co8252943.1_g000001 Rmu_sc0004932.1_g000005
rosa_roxburghii Rroxscaffold_5G00362260
rosa_rugosa Rorug04G0158000
rosa_samantha Rh4AG219700 Rh4BG221200 Rh4CG232500 Rh4DG218700
rosa_wichuraiana Rw4G018790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AarI CACCTGC 1 cut(s) 313
Acc36I ACCTGC 1 cut(s) 313
Acc65I GGTACC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 128
AccI GTMKAC 2 cut(s) 383, 551
AccII CGCG 3 cut(s) 207, 215, 311
AciI CCGC 7 cut(s) 86, 113, 202, 205, 215, 248, 389
AclWI GGATC 3 cut(s) 26, 32, 247
AcsI RAATTY 1 cut(s) 640
AcuI CTGAAG 1 cut(s) 254
AcvI CACGTG 1 cut(s) 272
AcyI GRCGYC 2 cut(s) 78, 266
AfaI GTAC 2 cut(s) 130, 728
AfiI CCNNNNNNNGG 5 cut(s) 100, 125, 132, 138, 262
AgsI TTSAA 6 cut(s) 13, 434, 518, 751, 953, 1109
AjnI CCWGG 2 cut(s) 165, 1075
Alw21I GWGCWC 3 cut(s) 222, 288, 1157
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 3 cut(s) 26, 32, 247
Ama87I CYCGRG 1 cut(s) 221
ApeKI GCWGC 3 cut(s) 190, 369, 1190
ApoI RAATTY 1 cut(s) 640
Asp718I GGTACC 1 cut(s) 128
AspLEI GCGC 2 cut(s) 311, 322
AspS9I GGNCC 3 cut(s) 177, 225, 890
AsuC2I CCSGG 4 cut(s) 101, 133, 229, 257
AsuHPI GGTGA 6 cut(s) 58, 262, 680, 812, 878, 1006
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 3 cut(s) 177, 225, 890
BaeI ACNNNNGTAYC 2 cut(s) 112, 145
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 2 cut(s) 222, 288
BauI CACGAG 1 cut(s) 1156
BbrPI CACGTG 1 cut(s) 272
BbsI GAAGAC 2 cut(s) 13, 1016
Bbv12I GWGCWC 3 cut(s) 222, 288, 1157
BbvI GCAGC 3 cut(s) 177, 381, 1177
BccI CCATC 1 cut(s) 863
BceAI ACGGC 5 cut(s) 65, 260, 261, 402, 1051
BciT130I CCWGG 2 cut(s) 167, 1077
BclI TGATCA 1 cut(s) 645
BcnI CCSGG 4 cut(s) 101, 133, 229, 257
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 4 cut(s) 462, 768, 894, 1091
BfmI CTRYAG 2 cut(s) 191, 1191
BfuAI ACCTGC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 86
BglII AGATCT 1 cut(s) 1087
BisI GCNGC 5 cut(s) 87, 191, 205, 370, 1191
BlpI GCTNAGC 2 cut(s) 294, 774
BlsI GCNGC 5 cut(s) 88, 192, 206, 371, 1192
Bme1390I CCNGG 6 cut(s) 101, 133, 167, 229, 257, 1077
Bme18I GGWCC 3 cut(s) 177, 225, 890
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 177, 225, 890
BmiI GGNNCC 3 cut(s) 130, 226, 567
BmrFI CCNGG 6 cut(s) 101, 133, 167, 229, 257, 1077
BmsI GCATC 3 cut(s) 754, 928, 1234
BpiI GAAGAC 2 cut(s) 13, 1016
BplI GAGNNNNNCTC 2 cut(s) 383, 415
BpmI CTGGAG 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 696
Bpu1102I GCTNAGC 2 cut(s) 294, 774
BpuMI CCSGG 4 cut(s) 101, 133, 229, 257
BsaAI YACGTR 1 cut(s) 272
BsaBI GATNNNNATC 1 cut(s) 36
BsaHI GRCGYC 2 cut(s) 78, 266
BsaJI CCNNGG 5 cut(s) 81, 132, 165, 962, 1076
BsaWI WCCGGW 3 cut(s) 125, 568, 797
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 125, 132, 138, 262
Bse8I GATNNNNATC 1 cut(s) 36
BseBI CCWGG 2 cut(s) 167, 1077
BseDI CCNNGG 5 cut(s) 81, 132, 165, 962, 1076
BseGI GGATG 4 cut(s) 307, 769, 847, 1105
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 5 cut(s) 100, 125, 132, 138, 262
BseRI GAGGAG 6 cut(s) 484, 514, 632, 860, 863, 1217
BseXI GCAGC 3 cut(s) 177, 381, 1177
BseYI CCCAGC 1 cut(s) 1215
Bsh1236I CGCG 3 cut(s) 207, 215, 311
Bsh1285I CGRYCG 2 cut(s) 342, 354
BshNI GGYRCC 1 cut(s) 128
BsiEI CGRYCG 2 cut(s) 342, 354
BsiHKAI GWGCWC 3 cut(s) 222, 288, 1157
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 7 cut(s) 101, 126, 132, 228, 256, 569, 798
BslI CCNNNNNNNGG 5 cut(s) 100, 125, 132, 138, 262
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 3 cut(s) 222, 288, 1157
Bsp143I GATC 8 cut(s) 31, 37, 208, 252, 351, 393, 645, 1087
Bsp1720I GCTNAGC 2 cut(s) 294, 774
BspACI CCGC 7 cut(s) 86, 113, 202, 205, 215, 248, 389
BspFNI CGCG 3 cut(s) 207, 215, 311
BspHI TCATGA 2 cut(s) 676, 1256
BspLI GGNNCC 3 cut(s) 130, 226, 567
BspMAI CTGCAG 2 cut(s) 195, 1195
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 3 cut(s) 26, 32, 247
BspT107I GGYRCC 1 cut(s) 128
BssECI CCNNGG 5 cut(s) 81, 132, 165, 962, 1076
BssMI GATC 8 cut(s) 31, 37, 208, 252, 351, 393, 645, 1087
BssNAI GTATAC 1 cut(s) 552
BssNI GRCGYC 2 cut(s) 78, 266
BssSI CACGAG 1 cut(s) 1156
Bst1107I GTATAC 1 cut(s) 552
Bst2BI CACGAG 1 cut(s) 1156
Bst2UI CCWGG 2 cut(s) 167, 1077
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 3 cut(s) 801, 855, 1194
BstACI GRCGYC 2 cut(s) 78, 266
BstBAI YACGTR 1 cut(s) 272
BstC8I GCNNGC 5 cut(s) 91, 348, 693, 789, 1064
BstDEI CTNAG 4 cut(s) 294, 696, 774, 1184
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 4 cut(s) 307, 769, 847, 1105
BstFNI CGCG 3 cut(s) 207, 215, 311
BstHHI GCGC 2 cut(s) 311, 322
BstKTI GATC 8 cut(s) 34, 40, 211, 255, 354, 396, 648, 1090
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 8 cut(s) 31, 37, 208, 252, 351, 393, 645, 1087
BstMCI CGRYCG 2 cut(s) 342, 354
BstMWI GCNNNNNNNGC 9 cut(s) 86, 112, 272, 317, 328, 784, 1029, 1072, 1180
BstNI CCWGG 2 cut(s) 167, 1077
BstSCI CCNGG 6 cut(s) 99, 131, 165, 227, 255, 1075
BstSFI CTRYAG 2 cut(s) 191, 1191
BstUI CGCG 3 cut(s) 207, 215, 311
BstV1I GCAGC 3 cut(s) 177, 381, 1177
BstV2I GAAGAC 2 cut(s) 13, 1016
BstX2I RGATCY 1 cut(s) 1087
BstYI RGATCY 1 cut(s) 1087
BstZ17I GTATAC 1 cut(s) 552
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 4 cut(s) 307, 769, 847, 1105
BtsI GCAGTG 4 cut(s) 490, 948, 985, 1129
BtsIMutI CAGTG 4 cut(s) 490, 948, 985, 1129
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 5 cut(s) 91, 348, 693, 789, 1064
CciI TCATGA 2 cut(s) 676, 1256
CfoI GCGC 2 cut(s) 311, 322
Cfr13I GGNCC 3 cut(s) 177, 225, 890
CseI GACGC 3 cut(s) 86, 255, 300
Csp6I GTAC 2 cut(s) 129, 727
CviAII CATG 2 cut(s) 677, 1257
CviQI GTAC 2 cut(s) 129, 727
DdeI CTNAG 4 cut(s) 294, 696, 774, 1184
DpnI GATC 8 cut(s) 33, 39, 210, 254, 353, 395, 647, 1089
DpnII GATC 8 cut(s) 31, 37, 208, 252, 351, 393, 645, 1087
Eam1104I CTCTTC 3 cut(s) 801, 855, 1194
EarI CTCTTC 3 cut(s) 801, 855, 1194
EciI GGCGGA 1 cut(s) 404
Ecl136II GAGCTC 2 cut(s) 220, 286
Eco24I GRGCYC 2 cut(s) 222, 288
Eco32I GATATC 1 cut(s) 1222
Eco47I GGWCC 3 cut(s) 177, 225, 890
Eco53kI GAGCTC 2 cut(s) 220, 286
Eco57I CTGAAG 1 cut(s) 254
Eco72I CACGTG 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 221
EcoICRI GAGCTC 2 cut(s) 220, 286
EcoRII CCWGG 2 cut(s) 165, 1075
EcoRV GATATC 1 cut(s) 1222
EcoT38I GRGCYC 2 cut(s) 222, 288
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 2 cut(s) 680, 1260
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 2 cut(s) 676, 1256
FbaI TGATCA 1 cut(s) 645
FblI GTMKAC 2 cut(s) 383, 551
Fnu4HI GCNGC 5 cut(s) 87, 191, 205, 370, 1191
FokI GGATG 4 cut(s) 314, 776, 854, 1112
FriOI GRGCYC 2 cut(s) 222, 288
Fsp4HI GCNGC 5 cut(s) 87, 191, 205, 370, 1191
FspBI CTAG 4 cut(s) 462, 768, 894, 1091
GlaI GCGC 2 cut(s) 310, 321
GluI GCNGC 5 cut(s) 87, 191, 205, 370, 1191
GsaI CCCAGC 1 cut(s) 1219
GsuI CTGGAG 1 cut(s) 353
HapII CCGG 7 cut(s) 101, 126, 132, 228, 256, 569, 798
HgaI GACGC 3 cut(s) 86, 255, 300
HhaI GCGC 2 cut(s) 311, 322
Hin1I GRCGYC 2 cut(s) 78, 266
Hin1II CATG 2 cut(s) 680, 1260
Hin6I GCGC 2 cut(s) 309, 320
HinP1I GCGC 2 cut(s) 309, 320
HincII GTYRAC 2 cut(s) 384, 703
HindII GTYRAC 2 cut(s) 384, 703
HindIII AAGCTT 2 cut(s) 414, 776
HinfI GANTC 8 cut(s) 53, 182, 335, 434, 673, 878, 1025, 1164
HpaII CCGG 7 cut(s) 101, 126, 132, 228, 256, 569, 798
HphI GGTGA 6 cut(s) 58, 262, 680, 812, 878, 1006
Hpy166II GTNNAC 3 cut(s) 384, 552, 703
Hpy188III TCNNGA 3 cut(s) 35, 677, 1257
Hpy8I GTNNAC 3 cut(s) 384, 552, 703
Hpy99I CGWCG 8 cut(s) 32, 50, 53, 80, 175, 316, 359, 388
HpyAV CCTTC 5 cut(s) 232, 274, 745, 850, 910
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 6 cut(s) 193, 742, 941, 1032, 1174, 1193
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 112, 272, 317, 328, 784, 1029, 1072, 1180
HpyF3I CTNAG 4 cut(s) 294, 696, 774, 1184
HpySE526I ACGT 1 cut(s) 271
Hsp92I GRCGYC 2 cut(s) 78, 266
Hsp92II CATG 2 cut(s) 680, 1260
HspAI GCGC 2 cut(s) 309, 320
KpnI GGTACC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 645
Kzo9I GATC 8 cut(s) 31, 37, 208, 252, 351, 393, 645, 1087
LmnI GCTCC 7 cut(s) 103, 141, 217, 283, 291, 711, 1152
Lsp1109I GCAGC 3 cut(s) 177, 381, 1177
LweI GCATC 3 cut(s) 754, 928, 1234
MaeI CTAG 4 cut(s) 462, 768, 894, 1091
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 2 cut(s) 267, 980
MalI GATC 8 cut(s) 33, 39, 210, 254, 353, 395, 647, 1089
MboI GATC 8 cut(s) 31, 37, 208, 252, 351, 393, 645, 1087
MflI RGATCY 1 cut(s) 1087
MhlI GDGCHC 3 cut(s) 222, 288, 1157
MluCI AATT 6 cut(s) 445, 534, 599, 633, 640, 684
MlyI GAGTC 5 cut(s) 47, 191, 344, 887, 1173
MmeI TCCRAC 6 cut(s) 51, 69, 594, 855, 861, 891
MseI TTAA 2 cut(s) 528, 1251
MspI CCGG 7 cut(s) 101, 126, 132, 228, 256, 569, 798
MspR9I CCNGG 6 cut(s) 101, 133, 167, 229, 257, 1077
MvaI CCWGG 2 cut(s) 167, 1077
MvnI CGCG 3 cut(s) 207, 215, 311
MwoI GCNNNNNNNGC 9 cut(s) 86, 112, 272, 317, 328, 784, 1029, 1072, 1180
NciI CCSGG 4 cut(s) 101, 133, 229, 257
NdeII GATC 8 cut(s) 31, 37, 208, 252, 351, 393, 645, 1087
NlaIII CATG 2 cut(s) 680, 1260
NlaIV GGNNCC 3 cut(s) 130, 226, 567
NmeAIII GCCGAG 1 cut(s) 987
NmuCI GTSAC 2 cut(s) 267, 980
PagI TCATGA 2 cut(s) 676, 1256
PaqCI CACCTGC 1 cut(s) 313
PcsI WCGNNNNNNNCGW 4 cut(s) 167, 369, 1055, 1064
PfeI GAWTC 3 cut(s) 434, 673, 1025
PflFI GACNNNGTC 1 cut(s) 175
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 5 cut(s) 88, 192, 206, 371, 1192
Ple19I CGATCG 1 cut(s) 354
PleI GAGTC 5 cut(s) 47, 190, 343, 886, 1172
PmaCI CACGTG 1 cut(s) 272
PmlI CACGTG 1 cut(s) 272
PpsI GAGTC 5 cut(s) 47, 190, 343, 886, 1172
Ppu21I YACGTR 1 cut(s) 272
PsiI TTATAA 1 cut(s) 444
Psp124BI GAGCTC 2 cut(s) 222, 288
Psp6I CCWGG 2 cut(s) 165, 1075
PspCI CACGTG 1 cut(s) 272
PspFI CCCAGC 1 cut(s) 1215
PspGI CCWGG 2 cut(s) 165, 1075
PspN4I GGNNCC 3 cut(s) 130, 226, 567
PspPI GGNCC 3 cut(s) 177, 225, 890
PstI CTGCAG 2 cut(s) 195, 1195
PsuI RGATCY 1 cut(s) 1087
PsyI GACNNNGTC 1 cut(s) 175
PvuI CGATCG 1 cut(s) 354
RsaI GTAC 2 cut(s) 130, 728
RsaNI GTAC 2 cut(s) 129, 727
SacI GAGCTC 2 cut(s) 222, 288
SalI GTCGAC 1 cut(s) 382
SaqAI TTAA 2 cut(s) 528, 1251
SatI GCNGC 5 cut(s) 87, 191, 205, 370, 1191
Sau3AI GATC 8 cut(s) 31, 37, 208, 252, 351, 393, 645, 1087
Sau96I GGNCC 3 cut(s) 177, 225, 890
SchI GAGTC 5 cut(s) 47, 191, 344, 887, 1173
ScrFI CCNGG 6 cut(s) 101, 133, 167, 229, 257, 1077
SduI GDGCHC 3 cut(s) 222, 288, 1157
SfaNI GCATC 3 cut(s) 754, 928, 1234
SfcI CTRYAG 2 cut(s) 191, 1191
SinI GGWCC 3 cut(s) 177, 225, 890
Sse9I AATT 6 cut(s) 445, 534, 599, 633, 640, 684
SsiI CCGC 7 cut(s) 86, 113, 202, 205, 215, 248, 389
SspMI CTAG 4 cut(s) 462, 768, 894, 1091
SstI GAGCTC 2 cut(s) 222, 288
StyD4I CCNGG 6 cut(s) 99, 131, 165, 227, 255, 1075
TaaI ACNGT 1 cut(s) 407
TaiI ACGT 1 cut(s) 274
TaqI TCGA 6 cut(s) 354, 383, 828, 1049, 1058, 1224
TaqII GACCGA 2 cut(s) 7, 328
TasI AATT 6 cut(s) 445, 534, 599, 633, 640, 684
TauI GCSGC 2 cut(s) 89, 207
TfiI GAWTC 3 cut(s) 434, 673, 1025
Tru1I TTAA 2 cut(s) 528, 1251
Tru9I TTAA 2 cut(s) 528, 1251
TscAI CASTG 4 cut(s) 490, 948, 985, 1129
TseFI GTSAC 2 cut(s) 267, 980
TseI GCWGC 3 cut(s) 190, 369, 1190
Tsp45I GTSAC 2 cut(s) 267, 980
TspDTI ATGAA 2 cut(s) 665, 1251
TspGWI ACGGA 1 cut(s) 1028
TspRI CASTG 4 cut(s) 490, 948, 985, 1129
Tth111I GACNNNGTC 1 cut(s) 175
VpaK11BI GGWCC 3 cut(s) 177, 225, 890
XapI RAATTY 1 cut(s) 640
XmiI GTMKAC 2 cut(s) 383, 551
XspI CTAG 4 cut(s) 462, 768, 894, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.