pycom16g15160

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013483
Physical Location & Seq
Forward (+)
11165028 .. 11165543
516 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g15160.1

Sequence Viewer

Length: 516 bp
ATGAATTTCTTCAACTCGGTCTTCTCCGACGAGCCCCTTCACTCCGACGATCCGCACTACGACGCCCCAAACGACGGCGTCGACCCGAACCCGGTGTCGGATCCGGAACCGGAACTAAGTCCGCGTCCGAATTCCGGCACCGGGGCATGGAGCTTCGGAGGTCTGATCACGACTCTGGCGACGAAGTCCGGATCCGTTATGAAGAACTACCGCCGGGATCTCGAGGAGTTCGGCTCCGAGTTGAAGAAGGAGACGGCGGTGATCCGGGAGGTGGCTTCGCGCGCCGTCAAGGATCTTCCGGGTTCGCTCGAGGTCGGCGCGTCGGTGGCTCAGGAATCGCTGGAGACGGTGGGCCAGGCGATCGATGATATCGGAGGCACCGTCTGGAAATCGACGGCGGATCGATCATCTCTCACGGTAGGGACGCAATCTCAGCTGATGTTGATGTTGAATCTGATAATTTGGATGATAATGTTAGTGGTAATCGTGAGAGTAGTGGTGATAATAAGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

172

Amino Acids

18.56

Weight (kDa)

4.58

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13110
fragaria_vesca FvH4_4g14080
malus_domestica MD13G1179500.v1.1 MD16G1180600.v1.1
prunus_persica Prupe.1G148100_v2.0.a1
pyrus_communis pycom16g15160 pycom16g15170
rosa_chinensis RchiOBHm_Chr4g0419271
rosa_laevigata RLG00000007820
rosa_multiflora Rmu_co8252943.1_g000001 Rmu_sc0004932.1_g000005
rosa_roxburghii Rroxscaffold_5G00362260
rosa_rugosa Rorug04G0158000
rosa_samantha Rh4AG219700 Rh4BG221200 Rh4CG232500 Rh4DG218700
rosa_wichuraiana Rw4G018790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 137, 377
AccI GTMKAC 1 cut(s) 81
AccII CGCG 4 cut(s) 124, 280, 282, 320
AccIII TCCGGA 2 cut(s) 103, 188
AciI CCGC 5 cut(s) 53, 122, 211, 257, 398
AclWI GGATC 9 cut(s) 44, 95, 108, 186, 199, 225, 256, 300, 408
AcsI RAATTY 2 cut(s) 4, 130
AcyI GRCGYC 2 cut(s) 63, 78
AfiI CCNNNNNNNGG 7 cut(s) 74, 91, 97, 134, 141, 147, 271
AgsI TTSAA 3 cut(s) 13, 244, 451
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 2 cut(s) 153, 436
AluI AGCT 2 cut(s) 153, 436
Alw26I GTCTC 2 cut(s) 245, 338
AlwI GGATC 9 cut(s) 44, 95, 108, 186, 199, 225, 256, 300, 408
Ama87I CYCGRG 2 cut(s) 221, 308
Aor13HI TCCGGA 2 cut(s) 103, 188
AoxI GGCC 1 cut(s) 352
ApoI RAATTY 2 cut(s) 4, 130
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 3 cut(s) 282, 284, 320
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 5 cut(s) 92, 142, 215, 266, 300
AsuHPI GGTGA 2 cut(s) 271, 511
AvaI CYCGRG 2 cut(s) 221, 308
BamHI GGATCC 2 cut(s) 100, 191
BanI GGYRCC 2 cut(s) 137, 377
BanII GRGCYC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 13
BceAI ACGGC 4 cut(s) 91, 269, 270, 411
BciT130I CCWGG 1 cut(s) 356
BclI TGATCA 1 cut(s) 165
BcnI CCSGG 5 cut(s) 92, 142, 215, 266, 300
BcoDI GTCTC 2 cut(s) 245, 338
Bme1390I CCNGG 6 cut(s) 92, 142, 215, 266, 300, 356
BmeT110I CYCGRG 2 cut(s) 221, 308
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 6 cut(s) 102, 108, 139, 193, 235, 379
BmrFI CCNGG 6 cut(s) 92, 142, 215, 266, 300, 356
BpiI GAAGAC 1 cut(s) 13
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BpmI CTGGAG 1 cut(s) 362
Bpu10I CCTNAGC 1 cut(s) 330
BpuMI CCSGG 5 cut(s) 92, 142, 215, 266, 300
Bsa29I ATCGAT 2 cut(s) 363, 403
BsaHI GRCGYC 2 cut(s) 63, 78
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 3 cut(s) 103, 109, 188
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 7 cut(s) 74, 91, 97, 134, 141, 147, 271
BseAI TCCGGA 2 cut(s) 103, 188
BseBI CCWGG 1 cut(s) 356
BseCI ATCGAT 2 cut(s) 363, 403
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 471
BseLI CCNNNNNNNGG 7 cut(s) 74, 91, 97, 134, 141, 147, 271
BseMII CTCAG 2 cut(s) 344, 446
BsePI GCGCGC 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 239
Bsh1236I CGCG 4 cut(s) 124, 280, 282, 320
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 1 cut(s) 354
BshNI GGYRCC 2 cut(s) 137, 377
BshVI ATCGAT 2 cut(s) 363, 403
BsiEI CGRYCG 1 cut(s) 363
BsiHKCI CYCGRG 2 cut(s) 221, 308
BsiSI CCGG 9 cut(s) 92, 104, 110, 135, 141, 189, 214, 265, 299
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 7 cut(s) 74, 91, 97, 134, 141, 147, 271
BsmAI GTCTC 2 cut(s) 245, 338
BsmBI CGTCTC 2 cut(s) 245, 338
BsmFI GGGAC 1 cut(s) 436
BsnI GGCC 1 cut(s) 354
BsoBI CYCGRG 2 cut(s) 221, 308
Bsp1286I GDGCHC 1 cut(s) 36
Bsp13I TCCGGA 2 cut(s) 103, 188
BspACI CCGC 5 cut(s) 53, 122, 211, 257, 398
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 2 cut(s) 343, 445
BspDI ATCGAT 2 cut(s) 363, 403
BspEI TCCGGA 2 cut(s) 103, 188
BspFNI CGCG 4 cut(s) 124, 280, 282, 320
BspLI GGNNCC 6 cut(s) 102, 108, 139, 193, 235, 379
BspPI GGATC 9 cut(s) 44, 95, 108, 186, 199, 225, 256, 300, 408
BspT107I GGYRCC 2 cut(s) 137, 377
BssECI CCNNGG 1 cut(s) 141
BssHII GCGCGC 1 cut(s) 280
BssNI GRCGYC 2 cut(s) 63, 78
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 3 cut(s) 349, 382, 418
BstACI GRCGYC 2 cut(s) 63, 78
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 3 cut(s) 116, 330, 432
BstF5I GGATG 1 cut(s) 471
BstFNI CGCG 4 cut(s) 124, 280, 282, 320
BstHHI GCGC 3 cut(s) 282, 284, 320
BstMAI GTCTC 2 cut(s) 245, 338
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 3 cut(s) 281, 326, 433
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 6 cut(s) 90, 140, 213, 264, 298, 354
BstUI CGCG 4 cut(s) 124, 280, 282, 320
BstV2I GAAGAC 1 cut(s) 13
BstX2I RGATCY 4 cut(s) 100, 191, 217, 292
BstYI RGATCY 4 cut(s) 100, 191, 217, 292
Bsu15I ATCGAT 2 cut(s) 363, 403
BsuRI GGCC 1 cut(s) 354
BsuTUI ATCGAT 2 cut(s) 363, 403
BtsCI GGATG 1 cut(s) 471
Cac8I GCNNGC 1 cut(s) 282
CfoI GCGC 3 cut(s) 282, 284, 320
Cfr13I GGNCC 1 cut(s) 352
ClaI ATCGAT 2 cut(s) 363, 403
CseI GACGC 5 cut(s) 67, 71, 113, 309, 433
CviAII CATG 1 cut(s) 147
CviJI RGCY 7 cut(s) 34, 153, 234, 275, 329, 354, 436
CviKI_1 RGCY 7 cut(s) 34, 153, 234, 275, 329, 354, 436
DdeI CTNAG 3 cut(s) 116, 330, 432
EciI GGCGGA 1 cut(s) 413
Eco24I GRGCYC 1 cut(s) 36
Eco32I GATATC 1 cut(s) 370
Eco88I CYCGRG 2 cut(s) 221, 308
EcoRI GAATTC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 354
EcoRV GATATC 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 36
Esp3I CGTCTC 2 cut(s) 245, 338
FaeI CATG 1 cut(s) 150
FaiI YATR 2 cut(s) 148, 200
FaqI GGGAC 1 cut(s) 436
FatI CATG 1 cut(s) 146
FbaI TGATCA 1 cut(s) 165
FblI GTMKAC 1 cut(s) 81
FokI GGATG 1 cut(s) 478
FriOI GRGCYC 1 cut(s) 36
GlaI GCGC 3 cut(s) 281, 283, 319
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 1 cut(s) 354
HapII CCGG 9 cut(s) 92, 104, 110, 135, 141, 189, 214, 265, 299
HgaI GACGC 5 cut(s) 67, 71, 113, 309, 433
HhaI GCGC 3 cut(s) 282, 284, 320
Hin1I GRCGYC 2 cut(s) 63, 78
Hin1II CATG 1 cut(s) 150
Hin6I GCGC 3 cut(s) 280, 282, 318
HinP1I GCGC 3 cut(s) 280, 282, 318
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 3 cut(s) 172, 335, 451
HpaII CCGG 9 cut(s) 92, 104, 110, 135, 141, 189, 214, 265, 299
HphI GGTGA 2 cut(s) 271, 511
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 9 cut(s) 28, 46, 100, 129, 158, 165, 238, 374, 456
Hpy188III TCNNGA 7 cut(s) 104, 169, 189, 221, 332, 385, 487
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 8 cut(s) 32, 50, 65, 77, 83, 184, 325, 397
HpyAV CCTTC 2 cut(s) 47, 241
HpyCH4III ACNGT 3 cut(s) 349, 382, 418
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 326, 433
HpyF3I CTNAG 3 cut(s) 116, 330, 432
Hsp92I GRCGYC 2 cut(s) 63, 78
Hsp92II CATG 1 cut(s) 150
HspAI GCGC 3 cut(s) 280, 282, 318
Kpn2I TCCGGA 2 cut(s) 103, 188
Ksp22I TGATCA 1 cut(s) 165
LmnI GCTCC 2 cut(s) 150, 239
MboII GAAGA 4 cut(s) 13, 214, 256, 287
MflI RGATCY 4 cut(s) 100, 191, 217, 292
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 3 cut(s) 4, 130, 459
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 3 cut(s) 51, 69, 78
MnlI CCTC 5 cut(s) 152, 217, 262, 304, 368
MroI TCCGGA 2 cut(s) 103, 188
MroXI GAANNNNTTC 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 436
MspI CCGG 9 cut(s) 92, 104, 110, 135, 141, 189, 214, 265, 299
MspR9I CCNGG 6 cut(s) 92, 142, 215, 266, 300, 356
MvaI CCWGG 1 cut(s) 356
MvnI CGCG 4 cut(s) 124, 280, 282, 320
MwoI GCNNNNNNNGC 3 cut(s) 281, 326, 433
NciI CCSGG 5 cut(s) 92, 142, 215, 266, 300
NlaIII CATG 1 cut(s) 150
NlaIV GGNNCC 6 cut(s) 102, 108, 139, 193, 235, 379
PaeR7I CTCGAG 2 cut(s) 221, 308
PauI GCGCGC 1 cut(s) 280
PcsI WCGNNNNNNNCGW 4 cut(s) 69, 78, 176, 378
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 335, 451
PflFI GACNNNGTC 2 cut(s) 77, 184
PfoI TCCNGGA 1 cut(s) 264
Ple19I CGATCG 1 cut(s) 363
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 6 cut(s) 102, 108, 139, 193, 235, 379
PspPI GGNCC 1 cut(s) 352
PspXI VCTCGAGB 1 cut(s) 308
PsuI RGATCY 4 cut(s) 100, 191, 217, 292
PsyI GACNNNGTC 2 cut(s) 77, 184
PteI GCGCGC 1 cut(s) 280
PvuI CGATCG 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 436
SalI GTCGAC 1 cut(s) 80
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 6 cut(s) 92, 142, 215, 266, 300, 356
SduI GDGCHC 1 cut(s) 36
SetI ASST 5 cut(s) 155, 163, 273, 315, 438
Sfr274I CTCGAG 2 cut(s) 221, 308
SlaI CTCGAG 2 cut(s) 221, 308
SmlI CTYRAG 2 cut(s) 221, 308
SmoI CTYRAG 2 cut(s) 221, 308
Sse9I AATT 3 cut(s) 4, 130, 459
SsiI CCGC 5 cut(s) 53, 122, 211, 257, 398
StyD4I CCNGG 6 cut(s) 90, 140, 213, 264, 298, 354
TaaI ACNGT 3 cut(s) 349, 382, 418
TaqI TCGA 6 cut(s) 81, 222, 309, 363, 392, 403
TaqII GACCGA 1 cut(s) 7
TasI AATT 3 cut(s) 4, 130, 459
TfiI GAWTC 2 cut(s) 335, 451
TspDTI ATGAA 2 cut(s) 17, 215
TspGWI ACGGA 1 cut(s) 184
Tth111I GACNNNGTC 2 cut(s) 77, 184
XapI RAATTY 2 cut(s) 4, 130
XhoI CTCGAG 2 cut(s) 221, 308
XmiI GTMKAC 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.