RLG00000007820

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013483
Physical Location & Seq
Forward (+)
21529303 .. 21531045
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007820

Sequence Viewer

Length: 1278 bp
ATGGATTTCTTCAAGTCCGTCTTCTCCGACGATCCCGATCCCTCCGACGACGACTCAAACTCACTCATCCAAAACGACGCCGTCGCGGCGAGCCACGACCCGGAGCAAAGTCCGCAACCGAACTCCGGTACCGGCGCGTGGAGCTTCGGGGGTCTGATGACGACCCTGGCGACGAGGTCCGAGTCGGTGCTGCAGACCTACCGCCGCGATCTCGCGGAGCTCGGGTCCGGGCTGAAGAAGGAGACGGCGGTGATCCGGGAGGTGGCGTCACGCGCCGTGAAGGAGCTCCCTGCTAAGCTGGATGTCGGCGCGTCGGTGGCGCAGGTGTCGCTGGAGTCGGTCGGGCAGGCGATCGACGACATCGGAAGCAGCGTGTGGAAGTCGACGGCGGAGATCATCTCTCACGGTAGGGAAGCTATGGCTGATGATATTGAATCTGATAATAATTCTGAAAATAATGCTAGTGAGAGGAGATTGAGTAGCAGTGGTAGTGATTTGAGGAGGTATAGTAGGCTTGAAGTTCAGGTTAAGGCAATTCAGAGTAATATGAATACTTACTTGGAGGAACCGGAGGATTTGGAGAGCTATGGAGAGTGGAAATTAGGGTTTGTGTTGGAGGAGAAAGAAGAGGAAATTGAGAATTTGATGAAGGAAAATGGAGTGATTGGTGAGATTCATGAGGAAATTGTGCCTGGTAAGGTTGACAATGGGAGTTTCTGGAGTAGGTACTTTTATAAGGTGCATAAGTTGAAGGAAGTGGAGGATGCTAGAGCTAAGCTTGTGAAGCGTGCGATTTCCGGTGAAGAAGAGGATTTGAGTTGGGATTTCGATGACGATGAAGATGAGGAGAAGAAGAAGGAAGAGGGTGATGGGTTGGAGTTGGAGGCTGGTCCTAGTGGGAGTGTGGAGTTGGAGAAGGGAAACCAGAGTTCTGAAGTGGGGAGAGAGTCTGATGATGCTGTGGGTGTTGAAAGTGTGCCGAGGCAATCTGTAAGCAGTGACAAGTCGGAGGCGAAATCGGAGGGGAAGACGGATAGTGGCGATTCTTGCAAAGAGAGTGATATTTCAATTGTATCGAGCCAGCCGTCAATGCCAGGGGAAGAAGATCTAGGGTGGGATGAGATTGAAGATATTGGAAGCAGTGATGAGAAGAAAGGGGAGGCTGTTGGGAGCACAAGTAGAGTCGATTTGCATAAGAGGCTTAGTGCTGCAGAGGAAGAGGAGGATTTGAGCTGGGATATCGAAGATGATGATGAAGATGATGCTATTAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

426

Amino Acids

46.6

Weight (kDa)

4.25

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 199 - 255 6.5e-15 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13110
fragaria_vesca FvH4_4g14080
malus_domestica MD13G1179500.v1.1 MD16G1180600.v1.1
prunus_persica Prupe.1G148100_v2.0.a1
pyrus_communis pycom16g15160 pycom16g15170
rosa_chinensis RchiOBHm_Chr4g0419271
rosa_laevigata RLG00000007820
rosa_multiflora Rmu_co8252943.1_g000001 Rmu_sc0004932.1_g000005
rosa_roxburghii Rroxscaffold_5G00362260
rosa_rugosa Rorug04G0158000
rosa_samantha Rh4AG219700 Rh4BG221200 Rh4CG232500 Rh4DG218700
rosa_wichuraiana Rw4G018790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 735
AarI CACCTGC 1 cut(s) 313
Acc36I ACCTGC 1 cut(s) 313
Acc65I GGTACC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 383
AccII CGCG 6 cut(s) 86, 137, 207, 215, 273, 311
AciI CCGC 7 cut(s) 86, 113, 202, 205, 215, 248, 389
AclWI GGATC 3 cut(s) 26, 32, 247
AcsI RAATTY 1 cut(s) 640
AcuI CTGAAG 2 cut(s) 254, 954
AcyI GRCGYC 2 cut(s) 78, 266
AfaI GTAC 2 cut(s) 130, 728
AfiI CCNNNNNNNGG 4 cut(s) 100, 125, 138, 262
AgsI TTSAA 7 cut(s) 13, 434, 518, 751, 971, 1068, 1127
AjnI CCWGG 3 cut(s) 165, 691, 1093
AjuI GAANNNNNNNTTGG 2 cut(s) 542, 574
AluBI AGCT 9 cut(s) 144, 220, 286, 298, 416, 585, 773, 778, 1233
AluI AGCT 9 cut(s) 144, 220, 286, 298, 416, 585, 773, 778, 1233
Alw21I GWGCWC 3 cut(s) 222, 288, 1175
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 3 cut(s) 26, 32, 247
Ama87I CYCGRG 1 cut(s) 221
ApeKI GCWGC 3 cut(s) 190, 369, 1208
ApoI RAATTY 1 cut(s) 640
Asp718I GGTACC 1 cut(s) 128
AspLEI GCGC 4 cut(s) 137, 275, 311, 322
AspS9I GGNCC 3 cut(s) 177, 225, 890
AsuC2I CCSGG 3 cut(s) 101, 229, 257
AsuHPI GGTGA 4 cut(s) 262, 680, 812, 878
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 3 cut(s) 177, 225, 890
BaeI ACNNNNGTAYC 2 cut(s) 112, 145
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 2 cut(s) 222, 288
BbsI GAAGAC 2 cut(s) 13, 1034
Bbv12I GWGCWC 3 cut(s) 222, 288, 1175
BbvI GCAGC 3 cut(s) 177, 381, 1195
BccI CCATC 1 cut(s) 863
BceAI ACGGC 5 cut(s) 65, 260, 261, 402, 1069
BciT130I CCWGG 3 cut(s) 167, 693, 1095
BcnI CCSGG 3 cut(s) 101, 229, 257
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 4 cut(s) 462, 768, 894, 1109
BfmI CTRYAG 2 cut(s) 191, 1209
BfuAI ACCTGC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 86
BglII AGATCT 1 cut(s) 1105
BisI GCNGC 5 cut(s) 87, 191, 205, 370, 1209
BlpI GCTNAGC 2 cut(s) 294, 774
BlsI GCNGC 5 cut(s) 88, 192, 206, 371, 1210
Bme1390I CCNGG 6 cut(s) 101, 167, 229, 257, 693, 1095
Bme18I GGWCC 3 cut(s) 177, 225, 890
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 177, 225, 890
BmiI GGNNCC 3 cut(s) 130, 226, 567
BmrFI CCNGG 6 cut(s) 101, 167, 229, 257, 693, 1095
BmsI GCATC 3 cut(s) 754, 946, 1252
BpiI GAAGAC 2 cut(s) 13, 1034
BplI GAGNNNNNCTC 2 cut(s) 383, 415
BpmI CTGGAG 2 cut(s) 353, 739
Bpu1102I GCTNAGC 2 cut(s) 294, 774
BpuMI CCSGG 3 cut(s) 101, 229, 257
BsaBI GATNNNNATC 1 cut(s) 36
BsaHI GRCGYC 2 cut(s) 78, 266
BsaJI CCNNGG 3 cut(s) 165, 980, 1094
BsaWI WCCGGW 3 cut(s) 125, 568, 797
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 125, 138, 262
Bse118I RCCGGY 1 cut(s) 131
Bse8I GATNNNNATC 1 cut(s) 36
BseBI CCWGG 3 cut(s) 167, 693, 1095
BseDI CCNNGG 3 cut(s) 165, 980, 1094
BseGI GGATG 4 cut(s) 66, 307, 769, 1123
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 4 cut(s) 100, 125, 138, 262
BseRI GAGGAG 5 cut(s) 484, 514, 632, 860, 1235
BseXI GCAGC 3 cut(s) 177, 381, 1195
BseYI CCCAGC 1 cut(s) 1233
Bsh1236I CGCG 6 cut(s) 86, 137, 207, 215, 273, 311
Bsh1285I CGRYCG 2 cut(s) 342, 354
BshNI GGYRCC 1 cut(s) 128
BsiEI CGRYCG 2 cut(s) 342, 354
BsiHKAI GWGCWC 3 cut(s) 222, 288, 1175
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 7 cut(s) 101, 126, 132, 228, 256, 569, 798
BslI CCNNNNNNNGG 4 cut(s) 100, 125, 138, 262
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 3 cut(s) 222, 288, 1175
Bsp143I GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1105
Bsp1720I GCTNAGC 2 cut(s) 294, 774
BspACI CCGC 7 cut(s) 86, 113, 202, 205, 215, 248, 389
BspFNI CGCG 6 cut(s) 86, 137, 207, 215, 273, 311
BspHI TCATGA 2 cut(s) 676, 1274
BspLI GGNNCC 3 cut(s) 130, 226, 567
BspMAI CTGCAG 2 cut(s) 195, 1213
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 3 cut(s) 26, 32, 247
BspT107I GGYRCC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 165, 980, 1094
BssMI GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1105
BssNI GRCGYC 2 cut(s) 78, 266
Bst2UI CCWGG 3 cut(s) 167, 693, 1095
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 4 cut(s) 621, 801, 855, 1212
BstACI GRCGYC 2 cut(s) 78, 266
BstC8I GCNNGC 4 cut(s) 91, 348, 789, 1082
BstDEI CTNAG 3 cut(s) 294, 774, 1202
BstF5I GGATG 4 cut(s) 66, 307, 769, 1123
BstFNI CGCG 6 cut(s) 86, 137, 207, 215, 273, 311
BstHHI GCGC 4 cut(s) 137, 275, 311, 322
BstKTI GATC 7 cut(s) 34, 40, 211, 255, 354, 396, 1108
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1105
BstMCI CGRYCG 2 cut(s) 342, 354
BstNI CCWGG 3 cut(s) 167, 693, 1095
BstSCI CCNGG 6 cut(s) 99, 165, 227, 255, 691, 1093
BstSFI CTRYAG 2 cut(s) 191, 1209
BstUI CGCG 6 cut(s) 86, 137, 207, 215, 273, 311
BstV1I GCAGC 3 cut(s) 177, 381, 1195
BstV2I GAAGAC 2 cut(s) 13, 1034
BstX2I RGATCY 1 cut(s) 1105
BstYI RGATCY 1 cut(s) 1105
BtsCI GGATG 4 cut(s) 66, 307, 769, 1123
BtsI GCAGTG 3 cut(s) 490, 1003, 1147
BtsIMutI CAGTG 3 cut(s) 490, 1003, 1147
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 4 cut(s) 91, 348, 789, 1082
CciI TCATGA 2 cut(s) 676, 1274
CfoI GCGC 4 cut(s) 137, 275, 311, 322
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 3 cut(s) 177, 225, 890
CseI GACGC 3 cut(s) 86, 255, 300
Csp6I GTAC 2 cut(s) 129, 727
CviAII CATG 2 cut(s) 677, 1275
CviQI GTAC 2 cut(s) 129, 727
DdeI CTNAG 3 cut(s) 294, 774, 1202
DpnI GATC 7 cut(s) 33, 39, 210, 254, 353, 395, 1107
DpnII GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1105
Eam1104I CTCTTC 4 cut(s) 621, 801, 855, 1212
EarI CTCTTC 4 cut(s) 621, 801, 855, 1212
EciI GGCGGA 1 cut(s) 404
Ecl136II GAGCTC 2 cut(s) 220, 286
Eco24I GRGCYC 2 cut(s) 222, 288
Eco32I GATATC 1 cut(s) 1240
Eco47I GGWCC 3 cut(s) 177, 225, 890
Eco53kI GAGCTC 2 cut(s) 220, 286
Eco57I CTGAAG 2 cut(s) 254, 954
Eco88I CYCGRG 1 cut(s) 221
EcoICRI GAGCTC 2 cut(s) 220, 286
EcoRII CCWGG 3 cut(s) 165, 691, 1093
EcoRV GATATC 1 cut(s) 1240
EcoT38I GRGCYC 2 cut(s) 222, 288
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 2 cut(s) 680, 1278
FaiI YATR 9 cut(s) 419, 507, 548, 588, 678, 735, 744, 1194, 1276
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 2 cut(s) 676, 1274
FblI GTMKAC 1 cut(s) 383
Fnu4HI GCNGC 5 cut(s) 87, 191, 205, 370, 1209
FokI GGATG 4 cut(s) 53, 314, 776, 1130
FriOI GRGCYC 2 cut(s) 222, 288
Fsp4HI GCNGC 5 cut(s) 87, 191, 205, 370, 1209
FspBI CTAG 4 cut(s) 462, 768, 894, 1109
GlaI GCGC 4 cut(s) 136, 274, 310, 321
GluI GCNGC 5 cut(s) 87, 191, 205, 370, 1209
GsaI CCCAGC 1 cut(s) 1237
GsuI CTGGAG 2 cut(s) 353, 739
HapII CCGG 7 cut(s) 101, 126, 132, 228, 256, 569, 798
HgaI GACGC 3 cut(s) 86, 255, 300
HhaI GCGC 4 cut(s) 137, 275, 311, 322
Hin1I GRCGYC 2 cut(s) 78, 266
Hin1II CATG 2 cut(s) 680, 1278
Hin6I GCGC 4 cut(s) 135, 273, 309, 320
HinP1I GCGC 4 cut(s) 135, 273, 309, 320
HincII GTYRAC 2 cut(s) 384, 703
HindII GTYRAC 2 cut(s) 384, 703
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 8 cut(s) 53, 182, 335, 434, 673, 947, 1043, 1182
HpaII CCGG 7 cut(s) 101, 126, 132, 228, 256, 569, 798
HphI GGTGA 4 cut(s) 262, 680, 812, 878
Hpy166II GTNNAC 2 cut(s) 384, 703
Hpy188III TCNNGA 4 cut(s) 35, 677, 718, 1275
Hpy8I GTNNAC 2 cut(s) 384, 703
Hpy99I CGWCG 9 cut(s) 32, 50, 53, 80, 86, 175, 316, 359, 388
HpyAV CCTTC 6 cut(s) 232, 274, 643, 745, 850, 910
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4V TGCA 5 cut(s) 193, 742, 1050, 1192, 1211
HpyF3I CTNAG 3 cut(s) 294, 774, 1202
Hsp92I GRCGYC 2 cut(s) 78, 266
Hsp92II CATG 2 cut(s) 680, 1278
HspAI GCGC 4 cut(s) 135, 273, 309, 320
KpnI GGTACC 1 cut(s) 132
Kzo9I GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1105
LmnI GCTCC 6 cut(s) 103, 141, 217, 283, 291, 1170
Lsp1109I GCAGC 3 cut(s) 177, 381, 1195
LweI GCATC 3 cut(s) 754, 946, 1252
MaeI CTAG 4 cut(s) 462, 768, 894, 1109
MaeIII GTNAC 2 cut(s) 267, 998
MalI GATC 7 cut(s) 33, 39, 210, 254, 353, 395, 1107
MboI GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1105
MfeI CAATTG 1 cut(s) 1068
MflI RGATCY 1 cut(s) 1105
MhlI GDGCHC 3 cut(s) 222, 288, 1175
MluCI AATT 7 cut(s) 445, 534, 599, 633, 640, 684, 1068
MlyI GAGTC 5 cut(s) 47, 191, 344, 956, 1191
MmeI TCCRAC 7 cut(s) 51, 69, 594, 855, 861, 891, 987
MseI TTAA 2 cut(s) 528, 1269
MspI CCGG 7 cut(s) 101, 126, 132, 228, 256, 569, 798
MspR9I CCNGG 6 cut(s) 101, 167, 229, 257, 693, 1095
MunI CAATTG 1 cut(s) 1068
MvaI CCWGG 3 cut(s) 167, 693, 1095
MvnI CGCG 6 cut(s) 86, 137, 207, 215, 273, 311
NciI CCSGG 3 cut(s) 101, 229, 257
NdeII GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1105
NlaIII CATG 2 cut(s) 680, 1278
NlaIV GGNNCC 3 cut(s) 130, 226, 567
NmeAIII GCCGAG 1 cut(s) 1005
NmuCI GTSAC 2 cut(s) 267, 998
PagI TCATGA 2 cut(s) 676, 1274
PaqCI CACCTGC 1 cut(s) 313
PcsI WCGNNNNNNNCGW 3 cut(s) 167, 369, 1082
PfeI GAWTC 3 cut(s) 434, 673, 1043
PflFI GACNNNGTC 2 cut(s) 80, 175
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 5 cut(s) 88, 192, 206, 371, 1210
Ple19I CGATCG 1 cut(s) 354
PleI GAGTC 5 cut(s) 47, 190, 343, 955, 1190
PpsI GAGTC 5 cut(s) 47, 190, 343, 955, 1190
PsiI TTATAA 1 cut(s) 735
Psp124BI GAGCTC 2 cut(s) 222, 288
Psp6I CCWGG 3 cut(s) 165, 691, 1093
PspFI CCCAGC 1 cut(s) 1233
PspGI CCWGG 3 cut(s) 165, 691, 1093
PspN4I GGNNCC 3 cut(s) 130, 226, 567
PspPI GGNCC 3 cut(s) 177, 225, 890
PstI CTGCAG 2 cut(s) 195, 1213
PsuI RGATCY 1 cut(s) 1105
PsyI GACNNNGTC 2 cut(s) 80, 175
PvuI CGATCG 1 cut(s) 354
RsaI GTAC 2 cut(s) 130, 728
RsaNI GTAC 2 cut(s) 129, 727
SacI GAGCTC 2 cut(s) 222, 288
SalI GTCGAC 1 cut(s) 382
SaqAI TTAA 2 cut(s) 528, 1269
SatI GCNGC 5 cut(s) 87, 191, 205, 370, 1209
Sau3AI GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1105
Sau96I GGNCC 3 cut(s) 177, 225, 890
SchI GAGTC 5 cut(s) 47, 191, 344, 956, 1191
ScrFI CCNGG 6 cut(s) 101, 167, 229, 257, 693, 1095
SduI GDGCHC 3 cut(s) 222, 288, 1175
SfaNI GCATC 3 cut(s) 754, 946, 1252
SfcI CTRYAG 2 cut(s) 191, 1209
SinI GGWCC 3 cut(s) 177, 225, 890
Sse9I AATT 7 cut(s) 445, 534, 599, 633, 640, 684, 1068
SsiI CCGC 7 cut(s) 86, 113, 202, 205, 215, 248, 389
SspMI CTAG 4 cut(s) 462, 768, 894, 1109
SstI GAGCTC 2 cut(s) 222, 288
StyD4I CCNGG 6 cut(s) 99, 165, 227, 255, 691, 1093
TaaI ACNGT 1 cut(s) 407
TaqI TCGA 6 cut(s) 354, 383, 828, 1076, 1185, 1242
TaqII GACCGA 1 cut(s) 328
TasI AATT 7 cut(s) 445, 534, 599, 633, 640, 684, 1068
TauI GCSGC 2 cut(s) 89, 207
TfiI GAWTC 3 cut(s) 434, 673, 1043
Tru1I TTAA 2 cut(s) 528, 1269
Tru9I TTAA 2 cut(s) 528, 1269
TscAI CASTG 3 cut(s) 490, 1003, 1147
TseFI GTSAC 2 cut(s) 267, 998
TseI GCWGC 3 cut(s) 190, 369, 1208
Tsp45I GTSAC 2 cut(s) 267, 998
TspDTI ATGAA 5 cut(s) 563, 662, 665, 852, 1269
TspGWI ACGGA 2 cut(s) 7, 1046
TspRI CASTG 3 cut(s) 490, 1003, 1147
Tth111I GACNNNGTC 2 cut(s) 80, 175
VpaK11BI GGWCC 3 cut(s) 177, 225, 890
XapI RAATTY 1 cut(s) 640
XmiI GTMKAC 1 cut(s) 383
XspI CTAG 4 cut(s) 462, 768, 894, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.