FvH4_4g14080

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013483
Physical Location & Seq
Forward (+)
17599546 .. 17601106
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14080.t1

Sequence Viewer

Length: 1245 bp
ATGGATTTCTTCAAGTCCGTCTTCTCCGACGATCCCGATCCCTCCGATGACGACTCAACCTCCCTCTCCCAAACCGAAGACGTCGCCAGCCCCGACCCGGAGCAAACTCCGGACTCGAACTCCCATACCACCGGGGCGTGGAGCTTCGGAGGTCTGATGACGACCCTCGCGACCAAGTCCGAGTCGGTGCTGCAGACCTACCGCCGCGATCTGGCGGAGCTCGGCTCCGGGCTGAAGAAGGAGACGGCGGTGATCCGGGATGTGGCCTCACGCGCCGTGAAGGAGCTCCCTGCTTCGCTCGATGTCGGCGCGTCAGTGGCTCAGGTGTCGCTAGAGTCGGTGGGGCAGGCGATCGACGACATCGGGAGCACGGTGTGGAAGTCGACGGCGGAGATCATCTCTCACGGTAGGGAAGCTATTAAGATTGATGATGTTGAATCTGATAATAATAATAGTAACTCTGAAAATAATGATAGGAGATTGAGTAGTAGTGGTAGTGGTTTGAGGAAGTATAGTAGGTTTGAAGCTCAGGTTAGGGCGATTCAGAGTAGTGTGAGTACTTACTTGGAGGAGCCGGAGGATTCGGAGAGCTATAGGGAGTGGAAATTAGGGTTTGTGATGGAGGCGAAAGCCGAGGAGATTGCGAATTTGATGAGGGAGAATGGAGTGATTGGTGAGATTCATGAGGAGATTGTGCCTGGTAAGGTCGATGATGGGAGCTTCTGGAGTAGGTACTTTTATAGGGTGTATAAGTTGAAGGAAGTGGAGGATGCTAGAGATAAGCTTGTGAAGCGTGCCATATCCGGTGAGGAAGAGGATTTGAGTTGGGATTTCGATGACGATGTAGAGGAGGAGGAGGAAGAGAAGAAGGTTTCTGGCCCTAGTGGGAGTGTGGAGTTGGAGAAGGGAGAACATAGTGGTGTAGTGGTGAGAGAGTCTGATGATGCTGCGGGTGTTGAAATTGTGCCGAGGCAGTCTGTAAGCAGTGACAAGTCGGAGGTGAAATCGGATTCTTGCAAAGAGAGTGATATCTCGATTATTTCGAGCCAGCCCTCGATGCCGGGAGAAGAAGATCTAGGGTGGGATGAGATTGAAGATATTGGGAGCAGTGATGAGAAGAAGGGGGAGGGTGTTGGGAGCACAAGTAGAGTCGATTTGCATAAGAGGCTTAGTGCTGCAGAGGAAGAGGAGGATTTGAGCTGGGATATCGAAGATGATGATGAAGATGGTGTTACTAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

415

Amino Acids

45.48

Weight (kDa)

4.28

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 201 - 257 1.6e-14 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13110
fragaria_vesca FvH4_4g14080
malus_domestica MD13G1179500.v1.1 MD16G1180600.v1.1
prunus_persica Prupe.1G148100_v2.0.a1
pyrus_communis pycom16g15160 pycom16g15170
rosa_chinensis RchiOBHm_Chr4g0419271
rosa_laevigata RLG00000007820
rosa_multiflora Rmu_co8252943.1_g000001 Rmu_sc0004932.1_g000005
rosa_roxburghii Rroxscaffold_5G00362260
rosa_rugosa Rorug04G0158000
rosa_samantha Rh4AG219700 Rh4BG221200 Rh4CG232500 Rh4DG218700
rosa_wichuraiana Rw4G018790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
AccI GTMKAC 1 cut(s) 383
AccII CGCG 4 cut(s) 170, 207, 273, 311
AccIII TCCGGA 1 cut(s) 109
AciI CCGC 6 cut(s) 202, 205, 215, 248, 389, 950
AclWI GGATC 3 cut(s) 26, 32, 247
AcsI RAATTY 1 cut(s) 646
AcuI CTGAAG 1 cut(s) 254
AcyI GRCGYC 1 cut(s) 81
AdeI CACNNNGTG 1 cut(s) 375
AfaI GTAC 2 cut(s) 559, 734
AfiI CCNNNNNNNGG 4 cut(s) 97, 138, 211, 262
AgsI TTSAA 6 cut(s) 13, 437, 524, 757, 959, 1094
AjnI CCWGG 1 cut(s) 697
AluBI AGCT 9 cut(s) 144, 220, 286, 416, 527, 591, 720, 784, 1200
AluI AGCT 9 cut(s) 144, 220, 286, 416, 527, 591, 720, 784, 1200
Alw21I GWGCWC 4 cut(s) 222, 288, 371, 1142
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 3 cut(s) 26, 32, 247
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 2 cut(s) 264, 877
ApeKI GCWGC 3 cut(s) 190, 947, 1175
ApoI RAATTY 1 cut(s) 646
AspLEI GCGC 2 cut(s) 275, 311
AspS9I GGNCC 1 cut(s) 878
AsuC2I CCSGG 5 cut(s) 98, 133, 229, 257, 1062
AsuHPI GGTGA 5 cut(s) 262, 686, 818, 940, 1012
BanII GRGCYC 2 cut(s) 222, 288
BbsI GAAGAC 2 cut(s) 13, 84
Bbv12I GWGCWC 4 cut(s) 222, 288, 371, 1142
BbvI GCAGC 3 cut(s) 177, 934, 1162
BccI CCATC 3 cut(s) 613, 707, 1220
BceAI ACGGC 3 cut(s) 260, 261, 402
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 1 cut(s) 699
BcnI CCSGG 5 cut(s) 98, 133, 229, 257, 1062
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 4 cut(s) 332, 774, 882, 1076
BfmI CTRYAG 3 cut(s) 191, 592, 1176
BglII AGATCT 1 cut(s) 1072
BisI GCNGC 4 cut(s) 191, 205, 948, 1176
BlsI GCNGC 4 cut(s) 192, 206, 949, 1177
BmcAI AGTACT 1 cut(s) 559
Bme1390I CCNGG 6 cut(s) 98, 133, 229, 257, 699, 1062
BmgT120I GGNCC 1 cut(s) 878
BmiI GGNNCC 2 cut(s) 226, 573
BmrFI CCNGG 6 cut(s) 98, 133, 229, 257, 699, 1062
BmsI GCATC 3 cut(s) 760, 934, 1047
BpiI GAAGAC 2 cut(s) 13, 84
BplI GAGNNNNNCTC 4 cut(s) 209, 241, 383, 415
BpmI CTGGAG 1 cut(s) 745
Bpu10I CCTNAGC 2 cut(s) 321, 528
BpuMI CCSGG 5 cut(s) 98, 133, 229, 257, 1062
BsaBI GATNNNNATC 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 132, 633, 968
BsaWI WCCGGW 2 cut(s) 109, 803
BsaXI ACNNNNNCTCC 8 cut(s) 44, 74, 104, 134, 469, 499, 1129, 1159
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 138, 211, 262
Bse8I GATNNNNATC 1 cut(s) 36
BseAI TCCGGA 1 cut(s) 109
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 3 cut(s) 132, 633, 968
BseGI GGATG 3 cut(s) 265, 775, 1090
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 4 cut(s) 97, 138, 211, 262
BseMII CTCAG 2 cut(s) 335, 542
BseRI GAGGAG 7 cut(s) 584, 650, 701, 863, 866, 869, 1202
BseXI GCAGC 3 cut(s) 177, 934, 1162
BseYI CCCAGC 1 cut(s) 1200
Bsh1236I CGCG 4 cut(s) 170, 207, 273, 311
Bsh1285I CGRYCG 1 cut(s) 354
BshFI GGCC 2 cut(s) 266, 879
BsiEI CGRYCG 1 cut(s) 354
BsiHKAI GWGCWC 4 cut(s) 222, 288, 371, 1142
BsiSI CCGG 8 cut(s) 98, 110, 132, 228, 256, 575, 804, 1061
BslI CCNNNNNNNGG 4 cut(s) 97, 138, 211, 262
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
BsnI GGCC 2 cut(s) 266, 879
Bsp1286I GDGCHC 4 cut(s) 222, 288, 371, 1142
Bsp13I TCCGGA 1 cut(s) 109
Bsp143I GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1072
Bsp68I TCGCGA 1 cut(s) 170
BspACI CCGC 6 cut(s) 202, 205, 215, 248, 389, 950
BspANI GGCC 2 cut(s) 266, 879
BspCNI CTCAG 2 cut(s) 334, 541
BspEI TCCGGA 1 cut(s) 109
BspFNI CGCG 4 cut(s) 170, 207, 273, 311
BspHI TCATGA 2 cut(s) 682, 1241
BspLI GGNNCC 2 cut(s) 226, 573
BspMAI CTGCAG 2 cut(s) 195, 1180
BspPI GGATC 3 cut(s) 26, 32, 247
BssECI CCNNGG 3 cut(s) 132, 633, 968
BssMI GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1072
BssNI GRCGYC 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 699
Bst4CI ACNGT 2 cut(s) 373, 407
Bst6I CTCTTC 3 cut(s) 807, 855, 1179
BstACI GRCGYC 1 cut(s) 81
BstC8I GCNNGC 4 cut(s) 88, 348, 795, 1049
BstDEI CTNAG 3 cut(s) 321, 528, 1169
BstF5I GGATG 3 cut(s) 265, 775, 1090
BstFNI CGCG 4 cut(s) 170, 207, 273, 311
BstHHI GCGC 2 cut(s) 275, 311
BstKTI GATC 7 cut(s) 34, 40, 211, 255, 354, 396, 1075
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1072
BstMCI CGRYCG 1 cut(s) 354
BstMWI GCNNNNNNNGC 5 cut(s) 272, 317, 790, 1057, 1165
BstNI CCWGG 1 cut(s) 699
BstSCI CCNGG 6 cut(s) 96, 131, 227, 255, 697, 1060
BstSFI CTRYAG 3 cut(s) 191, 592, 1176
BstUI CGCG 4 cut(s) 170, 207, 273, 311
BstV1I GCAGC 3 cut(s) 177, 934, 1162
BstV2I GAAGAC 2 cut(s) 13, 84
BstX2I RGATCY 1 cut(s) 1072
BstYI RGATCY 1 cut(s) 1072
BsuRI GGCC 2 cut(s) 266, 879
BtsCI GGATG 3 cut(s) 265, 775, 1090
BtsI GCAGTG 2 cut(s) 991, 1114
BtsIMutI CAGTG 3 cut(s) 321, 991, 1114
BtuMI TCGCGA 1 cut(s) 170
Cac8I GCNNGC 4 cut(s) 88, 348, 795, 1049
CciI TCATGA 2 cut(s) 682, 1241
CfoI GCGC 2 cut(s) 275, 311
Cfr13I GGNCC 1 cut(s) 878
CseI GACGC 1 cut(s) 300
Csp6I GTAC 2 cut(s) 558, 733
CviAII CATG 2 cut(s) 683, 1242
CviQI GTAC 2 cut(s) 558, 733
DdeI CTNAG 3 cut(s) 321, 528, 1169
DpnI GATC 7 cut(s) 33, 39, 210, 254, 353, 395, 1074
DpnII GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1072
DraIII CACNNNGTG 1 cut(s) 375
Eam1104I CTCTTC 3 cut(s) 807, 855, 1179
EarI CTCTTC 3 cut(s) 807, 855, 1179
EciI GGCGGA 2 cut(s) 230, 404
Ecl136II GAGCTC 2 cut(s) 220, 286
Eco24I GRGCYC 2 cut(s) 222, 288
Eco32I GATATC 2 cut(s) 1030, 1207
Eco53kI GAGCTC 2 cut(s) 220, 286
Eco57I CTGAAG 1 cut(s) 254
EcoICRI GAGCTC 2 cut(s) 220, 286
EcoRII CCWGG 1 cut(s) 697
EcoRV GATATC 2 cut(s) 1030, 1207
EcoT38I GRGCYC 2 cut(s) 222, 288
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 2 cut(s) 686, 1245
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 2 cut(s) 682, 1241
FauI CCCGC 1 cut(s) 943
FblI GTMKAC 1 cut(s) 383
Fnu4HI GCNGC 4 cut(s) 191, 205, 948, 1176
FokI GGATG 3 cut(s) 272, 782, 1097
FriOI GRGCYC 2 cut(s) 222, 288
Fsp4HI GCNGC 4 cut(s) 191, 205, 948, 1176
FspBI CTAG 4 cut(s) 332, 774, 882, 1076
GlaI GCGC 2 cut(s) 274, 310
GluI GCNGC 4 cut(s) 191, 205, 948, 1176
GsaI CCCAGC 1 cut(s) 1204
GsuI CTGGAG 1 cut(s) 745
HaeIII GGCC 2 cut(s) 266, 879
HapII CCGG 8 cut(s) 98, 110, 132, 228, 256, 575, 804, 1061
HgaI GACGC 1 cut(s) 300
HhaI GCGC 2 cut(s) 275, 311
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 2 cut(s) 686, 1245
Hin6I GCGC 2 cut(s) 273, 309
HinP1I GCGC 2 cut(s) 273, 309
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HindIII AAGCTT 1 cut(s) 782
HpaII CCGG 8 cut(s) 98, 110, 132, 228, 256, 575, 804, 1061
HphI GGTGA 5 cut(s) 262, 686, 818, 940, 1012
Hpy166II GTNNAC 1 cut(s) 384
Hpy188III TCNNGA 8 cut(s) 35, 110, 169, 364, 683, 724, 1033, 1242
Hpy8I GTNNAC 1 cut(s) 384
Hpy99I CGWCG 4 cut(s) 32, 86, 359, 388
HpyAV CCTTC 6 cut(s) 232, 274, 751, 862, 898, 1114
HpyCH4III ACNGT 2 cut(s) 373, 407
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 4 cut(s) 193, 1017, 1159, 1178
HpyF10VI GCNNNNNNNGC 5 cut(s) 272, 317, 790, 1057, 1165
HpyF3I CTNAG 3 cut(s) 321, 528, 1169
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 2 cut(s) 686, 1245
HspAI GCGC 2 cut(s) 273, 309
Kpn2I TCCGGA 1 cut(s) 109
Kzo9I GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1072
Lsp1109I GCAGC 3 cut(s) 177, 934, 1162
LweI GCATC 3 cut(s) 760, 934, 1047
MaeI CTAG 4 cut(s) 332, 774, 882, 1076
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 3 cut(s) 455, 986, 1231
MalI GATC 7 cut(s) 33, 39, 210, 254, 353, 395, 1074
MboI GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1072
MflI RGATCY 1 cut(s) 1072
MhlI GDGCHC 4 cut(s) 222, 288, 371, 1142
MluCI AATT 3 cut(s) 605, 646, 960
MlyI GAGTC 6 cut(s) 47, 107, 191, 344, 944, 1158
MmeI TCCRAC 3 cut(s) 51, 879, 975
MroI TCCGGA 1 cut(s) 109
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 1 cut(s) 918
MspI CCGG 8 cut(s) 98, 110, 132, 228, 256, 575, 804, 1061
MspR9I CCNGG 6 cut(s) 98, 133, 229, 257, 699, 1062
MvaI CCWGG 1 cut(s) 699
MvnI CGCG 4 cut(s) 170, 207, 273, 311
MwoI GCNNNNNNNGC 5 cut(s) 272, 317, 790, 1057, 1165
NciI CCSGG 5 cut(s) 98, 133, 229, 257, 1062
NdeII GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1072
NlaIII CATG 2 cut(s) 686, 1245
NlaIV GGNNCC 2 cut(s) 226, 573
NmeAIII GCCGAG 3 cut(s) 201, 658, 993
NmuCI GTSAC 1 cut(s) 986
NruI TCGCGA 1 cut(s) 170
PagI TCATGA 2 cut(s) 682, 1241
PcsI WCGNNNNNNNCGW 3 cut(s) 90, 167, 1040
PfeI GAWTC 5 cut(s) 437, 541, 581, 679, 1010
PflFI GACNNNGTC 1 cut(s) 175
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 4 cut(s) 192, 206, 949, 1177
Ple19I CGATCG 1 cut(s) 354
PleI GAGTC 6 cut(s) 47, 107, 190, 343, 943, 1157
PpsI GAGTC 6 cut(s) 47, 107, 190, 343, 943, 1157
Psp124BI GAGCTC 2 cut(s) 222, 288
Psp6I CCWGG 1 cut(s) 697
PspFI CCCAGC 1 cut(s) 1200
PspGI CCWGG 1 cut(s) 697
PspN4I GGNNCC 2 cut(s) 226, 573
PspPI GGNCC 1 cut(s) 878
PstI CTGCAG 2 cut(s) 195, 1180
PsuI RGATCY 1 cut(s) 1072
PsyI GACNNNGTC 1 cut(s) 175
PvuI CGATCG 1 cut(s) 354
RruI TCGCGA 1 cut(s) 170
RsaI GTAC 2 cut(s) 559, 734
RsaNI GTAC 2 cut(s) 558, 733
RseI CAYNNNNRTG 1 cut(s) 918
SacI GAGCTC 2 cut(s) 222, 288
SalI GTCGAC 1 cut(s) 382
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 4 cut(s) 191, 205, 948, 1176
Sau3AI GATC 7 cut(s) 31, 37, 208, 252, 351, 393, 1072
Sau96I GGNCC 1 cut(s) 878
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 6 cut(s) 47, 107, 191, 344, 944, 1158
ScrFI CCNGG 6 cut(s) 98, 133, 229, 257, 699, 1062
SduI GDGCHC 4 cut(s) 222, 288, 371, 1142
SfaNI GCATC 3 cut(s) 760, 934, 1047
SfcI CTRYAG 3 cut(s) 191, 592, 1176
SmiMI CAYNNNNRTG 1 cut(s) 918
Sse9I AATT 3 cut(s) 605, 646, 960
SsiI CCGC 6 cut(s) 202, 205, 215, 248, 389, 950
SspMI CTAG 4 cut(s) 332, 774, 882, 1076
SstI GAGCTC 2 cut(s) 222, 288
StyD4I CCNGG 6 cut(s) 96, 131, 227, 255, 697, 1060
TaaI ACNGT 2 cut(s) 373, 407
TaiI ACGT 1 cut(s) 84
TasI AATT 3 cut(s) 605, 646, 960
TatI WGTACW 1 cut(s) 557
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 5 cut(s) 437, 541, 581, 679, 1010
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 3 cut(s) 321, 991, 1114
TseFI GTSAC 1 cut(s) 986
TseI GCWGC 3 cut(s) 190, 947, 1175
Tsp45I GTSAC 1 cut(s) 986
TspDTI ATGAA 2 cut(s) 671, 1236
TspGWI ACGGA 1 cut(s) 7
TspRI CASTG 3 cut(s) 321, 991, 1114
Tth111I GACNNNGTC 1 cut(s) 175
XapI RAATTY 1 cut(s) 646
XmiI GTMKAC 1 cut(s) 383
XspI CTAG 4 cut(s) 332, 774, 882, 1076
ZraI GACGTC 1 cut(s) 82
ZrmI AGTACT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.