Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016595

Physical Location & Seq

Genomic Coordinates Reverse (-)

7938967 .. 7942943

Gene Structure 3977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3195 bp

ATGAATAAATATATTTGGTTGGTTCGTCTTTGGCATTCTAAGGAGGAACCCATGTTTCTTCGCTCAGTGTCGTCCTCATTTATCTTCATTCATGGTGTTCCTCGTAAGCTCAAGACCAGAACTGTCTTTCCTACTCTTTGTGGGACCAGGAGAGCTAGTTTTGCTGCTATATCTGTTTATATCTCTGAGGATGAATCATTTCAAGAAAAGAGAATTGATTCCGTGGAGAATCGTGGAATTCGACCTAATCATCAAACTTTGAAATGGCTTCTTGAAGGATGTTTGAAGACAAATGGGTCTTTAGATGAAGGAAGAAAGCTACATTCCCAGATTTTGAAGTTGGGTTTGGATAGCAATGGTTGCCTCTCTGAAAAGCTTTTTGATTTTTATCTTTTTAAAGGAGATTTATATGGTGCTTTCAAGGTGTTTGACGAAATGCCTGAGAGAACGATTTTTACTTGGAATAAGATGATAAAGGAGTTAGCTTCTAGGAATTTGATTGGAGAAGTGTTTGGTCTTTTTGTGAGAATGGTTAGTGAGAATGTTACTCCGAATGAAGGAACTTTCAGTGGTGTTTTGGAAGCATGTCGTGGTGGTAGTGTTGCTTTTGATGTAGTTGAGCAGATTCATGCAAGGATTTTATATCAGGGCTTGAGGGATAGTACGGTTGTGTGTAATCCTTTGATTGACTTGTACTCTAGGAATGGGTTTGTGGATTTAGCTAGAAGGGTTTTTGATGGGTTACGTCTGAAGGATCATAGTTCTTGGGTTGCAATGATATCCGGGCTTTCGAAAAATGAATGTGAAGCAGAAGCCATTAGATTGTTCTGCGATATGTATGTTTTAGGTATCATGCCAACGCCTTATGCGTTTTCAAGTGTTTTAAGTGCGTGTAAGAAGATAGAATCTCTTGAGATTGGTGAGCAGCTTCATGGGCTCGTATTGAAGTTAGGGTTTTCCTCCGACACTTATGTTTGCAATGCACTTGTGTCTTTGTACTTTCATTTGGGAAATTTGATATCAGCAGAACACATCTTCAGTAACATGTCACAGAGAGATGCAGTTACTTATAACACTCTTATCAACGGGCTTTCTCAGTGTGGTTATGGTGAGAAAGCTATGGAATTGTTCAAAAGAATGCACCTTGATGGACTTGAACCAGACAGTAATACTCTTGCGAGCCTTGTGGTTGCATGTTCAGCTGATGGAACTCTGTTTAGGGGACAACAGCTACATGCATACACAACTAAACTTGGTTTTGCTTCAAACAACAAGATTGAAGGTGCGCTCCTTAATCTGTATGCAAAATGCGCTGATATTGAAACCGCCCTTGATTATTTTCTTGAGACTGAGGTTGAAAATGTAGTTCTCTGGAATGTGATGCTAGTAGCTTATGGGTTATTAGACGATTTAAGAAATTCTTTTAGGATTTTCAGACAGATGCAGATAGAGGAAATTGTTCCAAATCAATATACCTACCCGAGTATTTTGAAAACTTGCATACGACTTGGGGATCTGGAGCTTGGAGAACAAATCCATAGTCAAATAATAAAAACTAACTTTCAGCTCAATGCCTATGTTTGTAGTGTGCTCATCGATATGTATGCAAAATTAGGAAAGTTGGATACTGCCTGGGATATACTTATAAGGTTTGCTGGAAAAGATGTTGTGTCTTGGACAACAATGATTGCAGGTTACACGCAATACAATTTCGACGACAAAGCTTTAACAACTTTCAGGCAGATGTTGGATCGAGGGATTCGGTCTGATGAAGTTGGATTGACAAATGCAGTTAGTGCATGTGCTGGTCTTCAAGCCTTAAAGGAAGGACAGCAAATTCATGCTCAAGCTTGTGTATCTGGTTTCTCATCTGACCTGCCATTTCAAAATGCACTGGTTACACTTTATTCTAGATGCGGAAAAATAGAGGAATCGTATTTAGCGTTTGAACAAACTGAAGCTGGAGATAATATAGCATGGAATGCTCTGGTATCCGGATTTCAGCAGAGTGGAAACAATGAAGAAGCACTTCGTGTCTTCGTTCGAATGAACAGAGAAGGAATTGACAATAATAATTTCACGTTTGGGTCTGCTGTGAAAGCTGCTTCTGAGACAGCTAACATGAAACAAGGGAAGCAGGTTCATGCTGTGATCACCAAAACCGGATACGATTCAGAAACCGAAGTTTGCAATGCTTTAATCTCTATGTATGCCAAGTGTGGGAGCATTTCTGATGCAGAGAAGCAGTTCCTTGAAGTCTCCACGAAAAATGAAGTTTCGTGGAATGCGATAATTAATGCTTATTCTAAACATGGGTTTGGTTCTGAAGCACTAGATTCTTTTGACCAGATGATACATTCTAATGTAAGGCCTAATCATGTGACGCTTGTGGGAGTTCTATCAGCATGTAGCCACATAGGACTAGTGGACAAGGGGATTGCATACTTTGAATCCATGAATTCAGAATATGGATTATCTCCTAAACCGGAACACTATGTGTGTGTAGTGGATATGCTAACTCGAGCTGGTCTTTTGAGCCGTGCGAAAGAGTTCATTCAGGAAATGCCTATTAAGCCAGATGCCTTGGTCTGGAGAACACTTTTGAGTGCTTGTGTAGTGCACAAGAACATGGAAATAGGAGAATTTGCAGCGCATCATCTCCTAGAGTTAGAACCTGAAGACTCAGCAACATATGTTCTTCTGTCAAATCTGTATGCGGTGTCCAAGAAATGGGATGCTAGGGATCTTACAAGACAAAAGATGAAAGAAAAGGGTGTGAAGAAAGAACCGGGACAAAGTTGGATTGAAGTTAAAAACTCAATTCACTCTTTCTATGTTGGTGACCAGAATCACCCGTTAGCAGATGAGATACATGAATACTTCCAAGATCTTACCAAACGAGCATCTGAAATCGGGTATGTGCAAGACTGTTTCAGCCTATTGAATGAACTGCAGCACGAGCAAAAAGATCCAATAATTTTCATCCACAGCGAGAAATTAGCAATTTCATTTGGACTCCTTAGCTTGCCTGCAACAGTGCCTATAAATGTAATGAAGAACCTACGTGTTTGCAACGATTGCCATGCTTGGATAAAGTTTGTATCTAAGGTATCAAATCGAGAAATCATAGTGAGGGATGCATATAGGTTTCATCATTTTGAAGGAGGTGCTTGCTCTTGTAAAGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

1064

Amino Acids

119.74

Weight (kDa)

5.92

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	150 - 196	4.8e-07	PPR repeat family
PPR_1	PF12854	351 - 380	1.4e-07	PPR repeat
PPR_2	PF13041	353 - 399	7e-11	PPR repeat family
PPR	PF01535	355 - 384	7.8e-09	PPR repeat
PPR_2	PF13041	454 - 501	1.9e-06	PPR repeat family
PPR_2	PF13041	656 - 699	4.2e-06	PPR repeat family
PPR_2	PF13041	757 - 804	2.1e-09	PPR repeat family
PPR	PF01535	759 - 788	1.9e-06	PPR repeat
E_motif	PF20431	874 - 936	4.9e-20	E motif
Eplus_motif	PF20430	941 - 967	2.6e-06	E+ motif
DYW_deaminase	PF14432	972 - 1064	1.2e-34	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13650
fragaria_vesca	FvH4_3g25260
malus_domestica	MD12G1002600.v1.1
prunus_persica	Prupe.7G002600_v2.0.a1
pyrus_communis	pycom12g00230
rosa_chinensis	RchiOBHm_Chr5g0046881
rosa_laevigata	RLG00000034452
rosa_roxburghii	Rroxscaffold_1G00034510
rosa_rugosa	Rorug05G0232400
rosa_samantha	Rh5AG311800 Rh5BG320800 Rh5CG346900 Rh5DG331500
rosa_wichuraiana	Rw5G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1071, 1646
AasI	GACNNNNNNGTC	1 cut(s)	295
Acc36I	ACCTGC	3 cut(s)	1682, 1884, 2128
AccB7I	CCANNNNNTGG	1 cut(s)	2730
AccIII	TCCGGA	1 cut(s)	1994
AciI	CCGC	3 cut(s)	1326, 1917, 2717
AclWI	GGATC	5 cut(s)	762, 1521, 1758, 2751, 2963
AcsI	RAATTY	7 cut(s)	237, 493, 1012, 1417, 1836, 2458, 2642
AcuI	CTGAAG	5 cut(s)	770, 1021, 1977, 2346, 2697
AdeI	CACNNNGTG	2 cut(s)	2033, 2497
AfaI	GTAC	3 cut(s)	664, 695, 998
AfiI	CCNNNNNNNGG	4 cut(s)	557, 2220, 2589, 2730
AflIII	ACRYGT	2 cut(s)	1044, 3064
AhlI	ACTAGT	1 cut(s)	2422
AjnI	CCWGG	2 cut(s)	146, 1631
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AloI	GAACNNNNNNTCC	2 cut(s)	112, 144
Alw21I	GWGCWC	2 cut(s)	1593, 2622
Alw26I	GTCTC	3 cut(s)	1340, 2105, 2263
Alw44I	GTGCAC	1 cut(s)	2618
AlwI	GGATC	5 cut(s)	762, 1521, 1758, 2751, 2963
Ama87I	CYCGRG	2 cut(s)	1480, 2520
Aor13HI	TCCGGA	1 cut(s)	1994
AoxI	GGCC	1 cut(s)	2369
ApaLI	GTGCAC	1 cut(s)	2618
ApeKI	GCWGC	5 cut(s)	164, 925, 2102, 2648, 2953
ApoI	RAATTY	7 cut(s)	237, 493, 1012, 1417, 1836, 2458, 2642
ArsI	GACNNNNNNTTYG	2 cut(s)	1525, 1557
AseI	ATTAAT	1 cut(s)	2295
Asp700I	GAANNNNTTC	6 cut(s)	198, 217, 1458, 2028, 2246, 2549
AspLEI	GCGC	3 cut(s)	1288, 1313, 2653
AspS9I	GGNCC	1 cut(s)	144
AsuC2I	CCSGG	2 cut(s)	784, 2790
AsuHPI	GGTGA	5 cut(s)	932, 1121, 2146, 2843, 2852
AsuII	TTCGAA	2 cut(s)	791, 2044
AvaI	CYCGRG	2 cut(s)	1480, 2520
AvaII	GGWCC	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	2622
BanII	GRGCYC	1 cut(s)	939
BauI	CACGAG	1 cut(s)	2957
BbsI	GAAGAC	4 cut(s)	293, 1802, 2029, 2685
Bbv12I	GWGCWC	2 cut(s)	1593, 2622
BbvI	GCAGC	5 cut(s)	151, 937, 2089, 2660, 2965
BccI	CCATC	3 cut(s)	731, 1142, 1199
BceAI	ACGGC	1 cut(s)	2523
BcgI	CGANNNNNNTGC	4 cut(s)	1586, 1620, 3065, 3099
BciT130I	CCWGG	2 cut(s)	148, 1633
BciVI	GTATCC	3 cut(s)	1618, 2002, 2159
BclI	TGATCA	1 cut(s)	2151
BcnI	CCSGG	2 cut(s)	784, 2790
BcoDI	GTCTC	3 cut(s)	1340, 2105, 2263
BcuI	ACTAGT	1 cut(s)	2422
BfmI	CTRYAG	1 cut(s)	2951
BfuAI	ACCTGC	3 cut(s)	1682, 1884, 2128
BfuI	GTATCC	3 cut(s)	1618, 2002, 2159
BglII	AGATCT	1 cut(s)	2887
BisI	GCNGC	5 cut(s)	165, 926, 2103, 2649, 2954
BlsI	GCNGC	5 cut(s)	166, 927, 2104, 2650, 2955
Bme1390I	CCNGG	4 cut(s)	148, 784, 1633, 2790
Bme18I	GGWCC	1 cut(s)	144
BmeT110I	CYCGRG	2 cut(s)	1480, 2520
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	2 cut(s)	48, 145
BmrFI	CCNGG	4 cut(s)	148, 784, 1633, 2790
BpiI	GAAGAC	4 cut(s)	293, 1802, 2029, 2685
BpmI	CTGGAG	3 cut(s)	1538, 1983, 2611
Bpu10I	CCTNAGC	1 cut(s)	3020
Bpu14I	TTCGAA	2 cut(s)	791, 2044
BpuEI	CTTGAG	5 cut(s)	95, 673, 932, 1364, 1830
BpuMI	CCSGG	2 cut(s)	784, 2790
Bsa29I	ATCGAT	1 cut(s)	1596
BsaAI	YACGTR	1 cut(s)	3065
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	3 cut(s)	222, 1632, 2583
BsaWI	WCCGGW	3 cut(s)	1994, 2162, 2485
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	4 cut(s)	557, 2220, 2589, 2730
Bse1I	ACTGG	2 cut(s)	1899, 3194
Bse3DI	GCAATG	4 cut(s)	361, 780, 985, 2197
Bse8I	GATNNNNATC	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	1994
BseBI	CCWGG	2 cut(s)	148, 1633
BseCI	ATCGAT	1 cut(s)	1596
BseDI	CCNNGG	3 cut(s)	222, 1632, 2583
BseGI	GGATG	5 cut(s)	196, 284, 2740, 2982, 3142
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	4 cut(s)	557, 2220, 2589, 2730
BseMI	GCAATG	4 cut(s)	361, 780, 985, 2197
BseMII	CTCAG	7 cut(s)	78, 177, 432, 1109, 1341, 2100, 2697
BseNI	ACTGG	2 cut(s)	1899, 3194
BseSI	GKGCMC	1 cut(s)	2622
BseXI	GCAGC	5 cut(s)	151, 937, 2089, 2660, 2965
BshFI	GGCC	1 cut(s)	2371
BshVI	ATCGAT	1 cut(s)	1596
BsiHKAI	GWGCWC	2 cut(s)	1593, 2622
BsiHKCI	CYCGRG	2 cut(s)	1480, 2520
BsiSI	CCGG	5 cut(s)	783, 1995, 2163, 2486, 2789
BslFI	GGGAC	3 cut(s)	157, 1236, 2805
BslI	CCNNNNNNNGG	4 cut(s)	557, 2220, 2589, 2730
BsmAI	GTCTC	3 cut(s)	1340, 2105, 2263
BsmFI	GGGAC	3 cut(s)	157, 1236, 2805
BsmI	GAATGC	4 cut(s)	34, 1143, 1987, 2290
BsnI	GGCC	1 cut(s)	2371
BsoBI	CYCGRG	2 cut(s)	1480, 2520
Bsp119I	TTCGAA	2 cut(s)	791, 2044
Bsp1286I	GDGCHC	3 cut(s)	939, 1593, 2622
Bsp13I	TCCGGA	1 cut(s)	1994
Bsp143I	GATC	7 cut(s)	754, 1513, 1750, 2151, 2743, 2887, 2968
BspACI	CCGC	3 cut(s)	1326, 1917, 2717
BspANI	GGCC	1 cut(s)	2371
BspCNI	CTCAG	7 cut(s)	77, 178, 433, 1108, 1342, 2101, 2696
BspDI	ATCGAT	1 cut(s)	1596
BspEI	TCCGGA	1 cut(s)	1994
BspLI	GGNNCC	2 cut(s)	48, 145
BspMAI	CTGCAG	1 cut(s)	2955
BspMI	ACCTGC	3 cut(s)	1682, 1884, 2128
BspPI	GGATC	5 cut(s)	762, 1521, 1758, 2751, 2963
BspT104I	TTCGAA	2 cut(s)	791, 2044
BsrDI	GCAATG	4 cut(s)	361, 780, 985, 2197
BsrI	ACTGG	2 cut(s)	1899, 3194
BssECI	CCNNGG	3 cut(s)	222, 1632, 2583
BssMI	GATC	7 cut(s)	754, 1513, 1750, 2151, 2743, 2887, 2968
BssSI	CACGAG	1 cut(s)	2957
BssT1I	CCWWGG	1 cut(s)	2583
Bst2BI	CACGAG	1 cut(s)	2957
Bst2UI	CCWGG	2 cut(s)	148, 1633
Bst4CI	ACNGT	5 cut(s)	124, 667, 1166, 2930, 3037
BstAPI	GCANNNNNTGC	4 cut(s)	360, 1796, 1982, 3078
BstBAI	YACGTR	1 cut(s)	3065
BstBI	TTCGAA	2 cut(s)	791, 2044
BstC8I	GCNNGC	4 cut(s)	1180, 3026, 3030, 3172
BstDSI	CCRYGG	1 cut(s)	222
BstEII	GGTNACC	1 cut(s)	2840
BstF5I	GGATG	5 cut(s)	196, 284, 2740, 2982, 3142
BstHHI	GCGC	3 cut(s)	1288, 1313, 2653
BstKTI	GATC	7 cut(s)	757, 1516, 1753, 2154, 2746, 2890, 2971
BstMAI	GTCTC	3 cut(s)	1340, 2105, 2263
BstMBI	GATC	7 cut(s)	754, 1513, 1750, 2151, 2743, 2887, 2968
BstNI	CCWGG	2 cut(s)	148, 1633
BstNSI	RCATGY	6 cut(s)	588, 1048, 1197, 1238, 1803, 2409
BstPI	GGTNACC	1 cut(s)	2840
BstSCI	CCNGG	4 cut(s)	146, 782, 1631, 2788
BstSFI	CTRYAG	1 cut(s)	2951
BstSLI	GKGCMC	1 cut(s)	2622
BstV1I	GCAGC	5 cut(s)	151, 937, 2089, 2660, 2965
BstV2I	GAAGAC	4 cut(s)	293, 1802, 2029, 2685
BstX2I	RGATCY	4 cut(s)	1513, 2743, 2887, 2968
BstYI	RGATCY	4 cut(s)	1513, 2743, 2887, 2968
Bsu15I	ATCGAT	1 cut(s)	1596
BsuI	GTATCC	3 cut(s)	1618, 2002, 2159
BsuRI	GGCC	1 cut(s)	2371
BsuTUI	ATCGAT	1 cut(s)	1596
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	5 cut(s)	196, 284, 2740, 2982, 3142
BtsIMutI	CAGTG	5 cut(s)	72, 574, 1103, 1892, 3042
BveI	ACCTGC	3 cut(s)	1682, 1884, 2128
Cac8I	GCNNGC	4 cut(s)	1180, 3026, 3030, 3172
CfoI	GCGC	3 cut(s)	1288, 1313, 2653
Cfr13I	GGNCC	1 cut(s)	144
ClaI	ATCGAT	1 cut(s)	1596
CseI	GACGC	1 cut(s)	2392
Csp6I	GTAC	3 cut(s)	663, 694, 997
CviQI	GTAC	3 cut(s)	663, 694, 997
DpnI	GATC	7 cut(s)	756, 1515, 1752, 2153, 2745, 2889, 2970
DpnII	GATC	7 cut(s)	754, 1513, 1750, 2151, 2743, 2887, 2968
DraI	TTTAAA	1 cut(s)	397
DraIII	CACNNNGTG	2 cut(s)	2033, 2497
DrdI	GACNNNNNNGTC	1 cut(s)	295
DseDI	GACNNNNNNGTC	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	2583
Eco147I	AGGCCT	1 cut(s)	2371
Eco24I	GRGCYC	1 cut(s)	939
Eco32I	GATATC	2 cut(s)	780, 1020
Eco47I	GGWCC	1 cut(s)	144
Eco57I	CTGAAG	5 cut(s)	770, 1021, 1977, 2346, 2697
Eco88I	CYCGRG	2 cut(s)	1480, 2520
Eco91I	GGTNACC	1 cut(s)	2840
EcoO65I	GGTNACC	1 cut(s)	2840
EcoRI	GAATTC	2 cut(s)	237, 2458
EcoRII	CCWGG	2 cut(s)	146, 1631
EcoRV	GATATC	2 cut(s)	780, 1020
EcoT14I	CCWWGG	1 cut(s)	2583
EcoT22I	ATGCAT	2 cut(s)	1240, 3142
EcoT38I	GRGCYC	1 cut(s)	939
ErhI	CCWWGG	1 cut(s)	2583
FalI	AAGNNNNNCTT	4 cut(s)	1405, 1437, 2013, 2045
FaqI	GGGAC	3 cut(s)	157, 1236, 2805
FauNDI	CATATG	1 cut(s)	2692
FbaI	TGATCA	1 cut(s)	2151
Fnu4HI	GCNGC	5 cut(s)	165, 926, 2103, 2649, 2954
FokI	GGATG	5 cut(s)	203, 291, 2747, 2969, 3149
FriOI	GRGCYC	1 cut(s)	939
Fsp4HI	GCNGC	5 cut(s)	165, 926, 2103, 2649, 2954
GlaI	GCGC	3 cut(s)	1287, 1312, 2652
GluI	GCNGC	5 cut(s)	165, 926, 2103, 2649, 2954
GsuI	CTGGAG	3 cut(s)	1538, 1983, 2611
HaeIII	GGCC	1 cut(s)	2371
HapII	CCGG	5 cut(s)	783, 1995, 2163, 2486, 2789
HgaI	GACGC	1 cut(s)	2392
HhaI	GCGC	3 cut(s)	1288, 1313, 2653
Hin6I	GCGC	3 cut(s)	1286, 1311, 2651
HinP1I	GCGC	3 cut(s)	1286, 1311, 2651
HindIII	AAGCTT	3 cut(s)	374, 1722, 1848
HpaII	CCGG	5 cut(s)	783, 1995, 2163, 2486, 2789
HphI	GGTGA	5 cut(s)	932, 1121, 2146, 2843, 2852
Hpy166II	GTNNAC	2 cut(s)	2428, 2620
Hpy8I	GTNNAC	2 cut(s)	2428, 2620
Hpy99I	CGWCG	1 cut(s)	1718
HpyAV	CCTTC	9 cut(s)	269, 302, 551, 720, 745, 1274, 1820, 2051, 3155
HpyCH4III	ACNGT	5 cut(s)	124, 667, 1166, 2930, 3037
HpyCH4IV	ACGT	3 cut(s)	745, 2081, 3064
HpySE526I	ACGT	3 cut(s)	745, 2081, 3064
HspAI	GCGC	3 cut(s)	1286, 1311, 2651
Kpn2I	TCCGGA	1 cut(s)	1994
Ksp22I	TGATCA	1 cut(s)	2151
Kzo9I	GATC	7 cut(s)	754, 1513, 1750, 2151, 2743, 2887, 2968
LmnI	GCTCC	3 cut(s)	1293, 1519, 2223
Lsp1109I	GCAGC	5 cut(s)	151, 937, 2089, 2660, 2965
MaeII	ACGT	3 cut(s)	745, 2081, 3064
MaeIII	GTNAC	9 cut(s)	544, 741, 1040, 1047, 1063, 1694, 1897, 2380, 2840
MalI	GATC	7 cut(s)	756, 1515, 1752, 2153, 2745, 2889, 2970
MboI	GATC	7 cut(s)	754, 1513, 1750, 2151, 2743, 2887, 2968
MflI	RGATCY	4 cut(s)	1513, 2743, 2887, 2968
MhlI	GDGCHC	3 cut(s)	939, 1593, 2622
MlyI	GAGTC	2 cut(s)	2675, 3009
MmeI	TCCRAC	5 cut(s)	987, 1602, 1728, 1756, 2780
Mph1103I	ATGCAT	2 cut(s)	1240, 3142
MroI	TCCGGA	1 cut(s)	1994
MroXI	GAANNNNTTC	6 cut(s)	198, 217, 1458, 2028, 2246, 2549
MslI	CAYNNNNRTG	3 cut(s)	1146, 1598, 2361
MspA1I	CMGCKG	1 cut(s)	1202
MspI	CCGG	5 cut(s)	783, 1995, 2163, 2486, 2789
MspR9I	CCNGG	4 cut(s)	148, 784, 1633, 2790
Mva1269I	GAATGC	4 cut(s)	34, 1143, 1987, 2290
MvaI	CCWGG	2 cut(s)	148, 1633
NciI	CCSGG	2 cut(s)	784, 2790
NdeI	CATATG	1 cut(s)	2692
NdeII	GATC	7 cut(s)	754, 1513, 1750, 2151, 2743, 2887, 2968
NlaIV	GGNNCC	2 cut(s)	48, 145
NmuCI	GTSAC	3 cut(s)	1047, 2380, 2840
NsiI	ATGCAT	2 cut(s)	1240, 3142
NspI	RCATGY	6 cut(s)	588, 1048, 1197, 1238, 1803, 2409
NspV	TTCGAA	2 cut(s)	791, 2044
PaeR7I	CTCGAG	1 cut(s)	2520
PceI	AGGCCT	1 cut(s)	2371
PciI	ACATGT	1 cut(s)	1044
PcsI	WCGNNNNNNNCGW	4 cut(s)	238, 866, 1940, 2285
PctI	GAATGC	4 cut(s)	34, 1143, 1987, 2290
PdmI	GAANNNNTTC	6 cut(s)	198, 217, 1458, 2028, 2246, 2549
PflMI	CCANNNNNTGG	1 cut(s)	2730
PkrI	GCNGC	5 cut(s)	166, 927, 2104, 2650, 2955
PleI	GAGTC	2 cut(s)	2675, 3009
PpsI	GAGTC	2 cut(s)	2675, 3009
Ppu21I	YACGTR	1 cut(s)	3065
PscI	ACATGT	1 cut(s)	1044
PshBI	ATTAAT	1 cut(s)	2295
PsiI	TTATAA	2 cut(s)	1071, 1646
Psp6I	CCWGG	2 cut(s)	146, 1631
PspEI	GGTNACC	1 cut(s)	2840
PspGI	CCWGG	2 cut(s)	146, 1631
PspN4I	GGNNCC	2 cut(s)	48, 145
PspPI	GGNCC	1 cut(s)	144
PspXI	VCTCGAGB	1 cut(s)	2520
PsrI	GAACNNNNNNTAC	2 cut(s)	439, 471
PstI	CTGCAG	1 cut(s)	2955
PsuI	RGATCY	4 cut(s)	1513, 2743, 2887, 2968
PvuII	CAGCTG	1 cut(s)	1202
RsaI	GTAC	3 cut(s)	664, 695, 998
RsaNI	GTAC	3 cut(s)	663, 694, 997
RseI	CAYNNNNRTG	3 cut(s)	1146, 1598, 2361
SatI	GCNGC	5 cut(s)	165, 926, 2103, 2649, 2954
Sau3AI	GATC	7 cut(s)	754, 1513, 1750, 2151, 2743, 2887, 2968
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	2 cut(s)	2675, 3009
ScrFI	CCNGG	4 cut(s)	148, 784, 1633, 2790
SduI	GDGCHC	3 cut(s)	939, 1593, 2622
SfcI	CTRYAG	1 cut(s)	2951
Sfr274I	CTCGAG	1 cut(s)	2520
SfuI	TTCGAA	2 cut(s)	791, 2044
SinI	GGWCC	1 cut(s)	144
SlaI	CTCGAG	1 cut(s)	2520
SmiMI	CAYNNNNRTG	3 cut(s)	1146, 1598, 2361
SmlI	CTYRAG	6 cut(s)	110, 652, 911, 1343, 1845, 2520
SmoI	CTYRAG	6 cut(s)	110, 652, 911, 1343, 1845, 2520
SpeI	ACTAGT	1 cut(s)	2422
SseBI	AGGCCT	1 cut(s)	2371
SsiI	CCGC	3 cut(s)	1326, 1917, 2717
StuI	AGGCCT	1 cut(s)	2371
StyD4I	CCNGG	4 cut(s)	146, 782, 1631, 2788
StyI	CCWWGG	1 cut(s)	2583
TaaI	ACNGT	5 cut(s)	124, 667, 1166, 2930, 3037
TaiI	ACGT	3 cut(s)	748, 2084, 3067
TaqI	TCGA	8 cut(s)	241, 791, 1596, 1713, 1753, 2044, 2521, 3118
TaqII	GACCGA	1 cut(s)	1752
TatI	WGTACW	2 cut(s)	693, 996
TscAI	CASTG	5 cut(s)	72, 574, 1103, 1899, 3042
TseFI	GTSAC	3 cut(s)	1047, 2380, 2840
TseI	GCWGC	5 cut(s)	164, 925, 2102, 2648, 2953
Tsp45I	GTSAC	3 cut(s)	1047, 2380, 2840
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	5 cut(s)	72, 574, 1103, 1899, 3042
Van91I	CCANNNNNTGG	1 cut(s)	2730
VneI	GTGCAC	1 cut(s)	2618
VpaK11BI	GGWCC	1 cut(s)	144
VspI	ATTAAT	1 cut(s)	2295
XapI	RAATTY	7 cut(s)	237, 493, 1012, 1417, 1836, 2458, 2642
XbaI	TCTAGA	1 cut(s)	1910
XceI	RCATGY	6 cut(s)	588, 1048, 1197, 1238, 1803, 2409
XhoI	CTCGAG	1 cut(s)	2520
XmnI	GAANNNNTTC	6 cut(s)	198, 217, 1458, 2028, 2246, 2549
Zsp2I	ATGCAT	2 cut(s)	1240, 3142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.