Rh5AG311800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016595
Physical Location & Seq
Forward (+)
45001737 .. 45005039
3303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG311800.1

Sequence Viewer

Length: 3231 bp
ATGAGTGGGAGTGGGTGTCTCAGGTCCTTGATGCTCACTGTAAACCAATGCCACAACCCTATGTTCTTCCATCGCTACCGGCTTCATTTCAGAACCAAACCCAAACCCACCTCAGTTATCAATCTTCGCAAGCACTTTCGTGGGAGTGTAGTCAGTTTGAGCTTGGCGGAATATAGTAATGCAGCCAACGCTCGTGTTTCAGATGATTATCTAGTTCATCAAAATGAAGGTGGTCCAAAGGGGATCGATTTGTTGCATTCTATGGAAGCACGTTGCATTCGTGCTAATTCTCAGACATATATTTGGCTTTTAAAAGGGTGCTTGAGTTCTGGGTCTTTGTTAGATGCTAGAAAACTTCATTCTAGGATTTTGAAGTTGGGTTTTGGTGGAGAATATGAAATAAGTGACCTGTTTGTTGGTGTTTATCTTGCAAATGATGACTCATGCAGCGCAGTAAAGGTTTTCGATGATCTACCATATAGAAGTTTATTCTCATGGAATAACATAATTCATGGGTTTCTTGCAAAGAAGTTGACGGGTCAAGTATTGGGTTTCTTTTCCCGAATGGTAGCAGAAAATGTGCGTCCTGATGAGACCACGTTTGCAGGAGTTTTAAGGGCTTGTGGTGGTGGTAACGCCAGTATCCAATATGTGGAACAGATTCATGCTAGGATTATCCGCCATTGTTTTGGTACTAGTTTACTTGTATGTAATCCCTTGATCGATTTATATGCTAAGAACGGCTCTGTGGATTCTGCTAAAAAAGTATTTGATAAGTTGAATTTTAGGGATAGTGTTTCCTGGGTGGCTATAATTTCTGGCTTATCTCGTAATGGACGAGAAGAAGAAGCTGTTCTCCTATTCATCCAGATGCATACTTCAGGAATTTTCCCAACTCCTTATGTTTTCTCAAGCGTGATTAGTGCCTGTGCAAAAATAGAGTTATTTGAGCTGGGTGAGCAGCTGCAATGCCTTGTTTTCAAGGGAGGCTTTTCTTGTGAAACATACGTATGCAATGCTCTTGTAACATTATATTCCCGTTCAGGGAACTTCATATCTGCTGAACAAGTTTTCAATACAATGTGGCACAGGGATGGAGTATCATATAACTCATTGATATCTGGGCTAGCTCAGTGTGGATTTAGTGATAGAGCTCTGGAATTGTTCAAGAAAATGCAGAGTGACTGTTTGGAACCTGACTGTGTAACAATTGCTAGTCTTTTGAGTGCCTGTGCATCAGTTGGTTATCTGTACAAGGGGAAACAACTCCACTCATATGCAATTAAAGCAGGAATGTCATCAGATATAATCCTCGAAGGGTCTCTGCTTGATCTTTATGTGAAATGCTCAGATTTGCAAACCGCCTATGAATTTTTCCTTACAACAGAGACAGAGAATGTTGTCCTGTGGAATGTGATGCTAGTTGCTTATGGGCAGCAAGATGACCTGATCGAATCGTTTCATATTTTTAAACAAATGCATGTTGAGGGTATGATTCCTAATCAATATACCTATCCGAGTATTTTGAGAACCTGTACTTCTGTTGGAGCTCTCAATTTAGGAGAACAGGTTCATACTCAAGCCATAAAAACTGGCTTTCAGTTTAATGCATATGTCTGTAGCGTGCTCATTGATATGTATGCTAAGCATGGAAAACTGGATACCGCCTTTGGAATACTCAGAAGACTCACTGAAGATGATGTTGTTTCGTGGACAGCTATGATTGCAGGGTATGCACAGCATGATTTGTTTGCTGAAGCTCTTTTACTTTTTGAAGAAATGCAAAACCGAGGGATTCGATCTGACAACGTAGGATTTTCAAGTGCAATTAGTTCATGTGCTGGTATTCAAGCACTCAATCAAGGTAGACAGATTCATGCTCAGTCATGCATATCTGGTTATTCGACTGATCTTTCCGTTGGCAATGCACTCGTTACCCTTTATGCTAGATGTGGTAGAATATGGGAAGCCTACCAAGCATTTGAGAAAATTGATGTGAAAGATAATATATCATGGAATGGACTGATATCAGGGTTTGGACAGAGTGGGTACTGTGAGGAAGCACTGCAGGTATTTTCTCAGATGCATCGAGCTGGAGTAGAAGCTAATTTGTTCACATTTGGCTCTGCAGTCAGCGCTGCTGCTAATTTAGCAAATATAAAACAAGGAGAGCAGATTCATGCCATGGTGATAAAAACTGGGAACAATTCAGAAGCTGAGGTTTCCAATGCTTTAATCACATTATACTCAAAGTGTGGTAGTGTTGATGATGCGAAGAGAGAGTTTATTGAAATGCCTGAAAAAAATGATATTTCTTGGAATGCCATGATCACTGGCTATTCTCAGCATGGGCATGGTATTGCAGCACTACATCTATTTGAGCAGATGAAACAACTTGGTGTGGTGCCAAGCCATGTCACATTTGTGGGAGTACTTTCAGCTTGTAGCCATGTAGGCTTGGTAAGTGAGGGGCTTGCATACTTTGAATCCATGAGCAAAGAGCATGGACTAGTGCCTAAGCCTGAGCATTATGCTTGTGTTGTTGATCTTCTTAGTCGAGCTGGTTCTTTGAGCCAGGCAAGAAAATTCATAACTGAGATGCCAATAAAACCAGATTCGATGATTTGGAGGACTCTCTTAAGTGCTTGTATAGCTAAAAAGAACACAGAAATTGGGGAGGTTGCTGCCCGTCATCTTCTAGAACTGGAACCTGAAGACTCAGCAACTTACGTTCTCATATCAAACATGTATGCAGTGGCAGGAATGTGGGGTTATAGGGATCAGGCAAGGCAATTAATGAAGGAAAGGGGTGTGAAGAAAGAGCCTGGCCGCAGTTGGATTGAGGTAAAGAATTCGGTTCATGCATTCTATGTTGGTGACCGGCTGCACCCACTTGCCAATAAGATATATGAATTCTTAGGGGATTTGAATGAGCGGGCAGCTGAAATTGGTTATGTTGAGGACCGTAACAACCTCTGGAATGACATGGAACAACAGCATAAGGATCCAACAGTGTACATTCATAGCGAGAAATTGGCAATAGCTTTTGGCCTGATTAGCCTATCTAATACGATTCCCATACGTGTAATTAAGAATCTCCGTGTTTGTAATGATTGCCATAATTGGATCAAGCATACGTCGAAGATCTCAAAAAGAACTATCATAGTACGAGATGCATATCGTTTTCATCATTTTAAAGATGGTATTTGCTCTTGTAATGATTACTGGTAA

Protein Analysis

1076

Amino Acids

119.9

Weight (kDa)

6.62

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 163 - 208 1.7e-06 PPR repeat family
PPR_2 PF13041 264 - 312 7.4e-08 PPR repeat family
PPR_2 PF13041 365 - 412 1.3e-08 PPR repeat family
PPR_1 PF12854 365 - 393 6.5e-06 PPR repeat
PPR PF01535 367 - 395 5.1e-08 PPR repeat
PPR_2 PF13041 466 - 512 1.5e-07 PPR repeat family
PPR_2 PF13041 567 - 614 1.1e-09 PPR repeat family
PPR PF01535 569 - 599 9.8e-08 PPR repeat
PPR_2 PF13041 668 - 712 9e-08 PPR repeat family
PPR PF01535 670 - 700 2.3e-07 PPR repeat
PPR_2 PF13041 769 - 816 2.1e-10 PPR repeat family
PPR PF01535 771 - 801 3.7e-07 PPR repeat
E_motif PF20431 888 - 948 4.5e-19 E motif
DYW_deaminase PF14432 984 - 1076 5.2e-34 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016595)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13650
fragaria_vesca FvH4_3g25260
malus_domestica MD12G1002600.v1.1
prunus_persica Prupe.7G002600_v2.0.a1
pyrus_communis pycom12g00230
rosa_chinensis RchiOBHm_Chr5g0046881
rosa_laevigata RLG00000034452
rosa_roxburghii Rroxscaffold_1G00034510
rosa_rugosa Rorug05G0232400
rosa_samantha Rh5AG311800 Rh5BG320800 Rh5CG346900 Rh5DG331500
rosa_wichuraiana Rw5G029140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2059
AccB1I GGYRCC 1 cut(s) 2404
AccB7I CCANNNNNTGG 1 cut(s) 652
AccBSI CCGCTC 1 cut(s) 2935
AccI GTMKAC 1 cut(s) 1867
AciI CCGC 6 cut(s) 167, 679, 1362, 1665, 2830, 2935
AclWI GGATC 5 cut(s) 251, 2787, 2999, 3012, 3134
AcoI YGGCCR 1 cut(s) 2827
AcsI RAATTY 6 cut(s) 781, 885, 1370, 2585, 2851, 2912
AcuI CTGAAG 4 cut(s) 864, 1713, 1776, 2733
AfaI GTAC 7 cut(s) 694, 1253, 1537, 2051, 2433, 3017, 3168
AfeI AGCGCT 1 cut(s) 2137
AfiI CCNNNNNNNGG 2 cut(s) 652, 1044
AflII CTTAAG 1 cut(s) 2638
AflIII ACRYGT 2 cut(s) 2745, 3082
AhlI ACTAGT 2 cut(s) 695, 2509
AjnI CCWGG 3 cut(s) 800, 2574, 2824
AleI CACNNNNGTG 2 cut(s) 138, 2423
AloI GAACNNNNNNTCC 2 cut(s) 1554, 1586
Alw21I GWGCWC 3 cut(s) 1156, 1552, 1629
Alw26I GTCTC 4 cut(s) 23, 587, 1326, 1382
AlwI GGATC 5 cut(s) 251, 2787, 2999, 3012, 3134
AlwNI CAGNNNCTG 1 cut(s) 2216
Aor51HI AGCGCT 1 cut(s) 2137
AoxI GGCC 2 cut(s) 2827, 3049
ApoI RAATTY 6 cut(s) 781, 885, 1370, 2585, 2851, 2912
AseI ATTAAT 1 cut(s) 2795
Asp700I GAANNNNTTC 4 cut(s) 660, 852, 1458, 1569
AspLEI GCGC 2 cut(s) 452, 2138
AspS9I GGNCC 3 cut(s) 24, 233, 2962
AsuHPI GGTGA 3 cut(s) 968, 2200, 2888
AsuNHI GCTAGC 1 cut(s) 1126
AvaII GGWCC 3 cut(s) 24, 233, 2962
BaeI ACNNNNGTAYC 2 cut(s) 625, 658
BamHI GGATCC 1 cut(s) 3004
BanI GGYRCC 1 cut(s) 2404
BanII GRGCYC 2 cut(s) 1156, 1552
BarI GAAGNNNNNNTAC 2 cut(s) 1749, 1781
BauI CACGAG 1 cut(s) 192
BbsI GAAGAC 2 cut(s) 1690, 2721
Bbv12I GWGCWC 3 cut(s) 1156, 1552, 1629
BbvCI CCTCAGC 1 cut(s) 2217
BccI CCATC 3 cut(s) 78, 1088, 3194
BceAI ACGGC 1 cut(s) 757
BcgI CGANNNNNNTGC 4 cut(s) 713, 747, 1912, 1946
BciT130I CCWGG 3 cut(s) 802, 2576, 2826
BciVI GTATCC 2 cut(s) 653, 1654
BclI TGATCA 1 cut(s) 2328
BcoDI GTCTC 4 cut(s) 23, 587, 1326, 1382
BcuI ACTAGT 2 cut(s) 695, 2509
BfmI CTRYAG 3 cut(s) 1618, 2066, 2127
BfoI RGCGCY 1 cut(s) 2139
BfrI CTTAAG 1 cut(s) 2638
BfuAI ACCTGC 1 cut(s) 2059
BfuI GTATCC 2 cut(s) 653, 1654
BglI GCCNNNNNGGC 1 cut(s) 2454
BglII AGATCT 1 cut(s) 3144
BlpI GCTNAGC 1 cut(s) 1644
BmcAI AGTACT 1 cut(s) 2433
Bme1390I CCNGG 3 cut(s) 802, 2576, 2826
Bme18I GGWCC 3 cut(s) 24, 233, 2962
BmgT120I GGNCC 3 cut(s) 24, 233, 2962
BmiI GGNNCC 4 cut(s) 1194, 2406, 2709, 3006
BmrFI CCNGG 3 cut(s) 802, 2576, 2826
BmrI ACTGGG 1 cut(s) 2208
BmtI GCTAGC 1 cut(s) 1130
BmuI ACTGGG 1 cut(s) 2208
BpiI GAAGAC 2 cut(s) 1690, 2721
BpmI CTGGAG 1 cut(s) 2115
Bpu10I CCTNAGC 3 cut(s) 2217, 2517, 2523
Bpu1102I GCTNAGC 1 cut(s) 1644
BpuEI CTTGAG 3 cut(s) 343, 895, 1563
Bsa29I ATCGAT 2 cut(s) 246, 723
BsaAI YACGTR 2 cut(s) 1009, 3083
BsaBI GATNNNNATC 2 cut(s) 207, 3177
BsaI GGTCTC 2 cut(s) 587, 1326
BsaJI CCNNGG 3 cut(s) 801, 1789, 2184
BsaXI ACNNNNNCTCC 3 cut(s) 31, 1554, 1584
Bsc4I CCNNNNNNNGG 2 cut(s) 652, 1044
Bse118I RCCGGY 2 cut(s) 78, 2880
Bse1I ACTGG 7 cut(s) 639, 1597, 1662, 2203, 2338, 2709, 3230
Bse3DI GCAATG 3 cut(s) 974, 1021, 1930
Bse8I GATNNNNATC 2 cut(s) 207, 3177
BseBI CCWGG 3 cut(s) 802, 2576, 2826
BseCI ATCGAT 2 cut(s) 246, 723
BseDI CCNNGG 3 cut(s) 801, 1789, 2184
BseGI GGATG 2 cut(s) 864, 1099
BseJI GATNNNNATC 2 cut(s) 207, 3177
BseLI CCNNNNNNNGG 2 cut(s) 652, 1044
BseMI GCAATG 3 cut(s) 974, 1021, 1930
BseNI ACTGG 7 cut(s) 639, 1597, 1662, 2203, 2338, 2709, 3230
BseYI CCCAGC 1 cut(s) 952
BsgI GTGCAG 1 cut(s) 2870
BshFI GGCC 2 cut(s) 2829, 3051
BshNI GGYRCC 1 cut(s) 2404
BshVI ATCGAT 2 cut(s) 246, 723
BsiHKAI GWGCWC 3 cut(s) 1156, 1552, 1629
BsiSI CCGG 2 cut(s) 79, 2881
BslI CCNNNNNNNGG 2 cut(s) 652, 1044
BsmAI GTCTC 4 cut(s) 23, 587, 1326, 1382
BsmI GAATGC 4 cut(s) 256, 276, 2326, 2864
BsnI GGCC 2 cut(s) 2829, 3051
Bso31I GGTCTC 2 cut(s) 587, 1326
Bsp1286I GDGCHC 3 cut(s) 1156, 1552, 1629
Bsp1407I TGTACA 2 cut(s) 1251, 3015
Bsp1720I GCTNAGC 1 cut(s) 1644
Bsp19I CCATGG 1 cut(s) 2184
BspACI CCGC 6 cut(s) 167, 679, 1362, 1665, 2830, 2935
BspANI GGCC 2 cut(s) 2829, 3051
BspDI ATCGAT 2 cut(s) 246, 723
BspLI GGNNCC 4 cut(s) 1194, 2406, 2709, 3006
BspMAI CTGCAG 2 cut(s) 2070, 2131
BspMI ACCTGC 1 cut(s) 2059
BspOI GCTAGC 1 cut(s) 1130
BspPI GGATC 5 cut(s) 251, 2787, 2999, 3012, 3134
BspT107I GGYRCC 1 cut(s) 2404
BspTI CTTAAG 1 cut(s) 2638
BspTNI GGTCTC 2 cut(s) 587, 1326
BsrBI CCGCTC 1 cut(s) 2935
BsrDI GCAATG 3 cut(s) 974, 1021, 1930
BsrFI RCCGGY 2 cut(s) 78, 2880
BsrGI TGTACA 2 cut(s) 1251, 3015
BsrI ACTGG 7 cut(s) 639, 1597, 1662, 2203, 2338, 2709, 3230
BssAI RCCGGY 2 cut(s) 78, 2880
BssECI CCNNGG 3 cut(s) 801, 1789, 2184
BssSI CACGAG 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 2184
Bst2BI CACGAG 1 cut(s) 192
Bst2UI CCWGG 3 cut(s) 802, 2576, 2826
Bst4CI ACNGT 6 cut(s) 40, 1187, 1202, 2054, 2966, 3013
Bst6I CTCTTC 1 cut(s) 2270
BstAFI CTTAAG 1 cut(s) 2638
BstAPI GCANNNNNTGC 1 cut(s) 1733
BstAUI TGTACA 2 cut(s) 1251, 3015
BstBAI YACGTR 2 cut(s) 1009, 3083
BstC8I GCNNGC 5 cut(s) 131, 1128, 1625, 2475, 2937
BstDSI CCRYGG 1 cut(s) 2184
BstEII GGTNACC 1 cut(s) 2876
BstF5I GGATG 2 cut(s) 864, 1099
BstH2I RGCGCY 1 cut(s) 2139
BstHHI GCGC 2 cut(s) 452, 2138
BstMAI GTCTC 4 cut(s) 23, 587, 1326, 1382
BstNI CCWGG 3 cut(s) 802, 2576, 2826
BstNSI RCATGY 2 cut(s) 1484, 2749
BstPI GGTNACC 1 cut(s) 2876
BstSCI CCNGG 3 cut(s) 800, 2574, 2824
BstSFI CTRYAG 3 cut(s) 1618, 2066, 2127
BstSNI TACGTA 1 cut(s) 1009
BstV2I GAAGAC 2 cut(s) 1690, 2721
BstX2I RGATCY 2 cut(s) 3004, 3144
BstXI CCANNNNNNTGG 1 cut(s) 689
BstYI RGATCY 2 cut(s) 3004, 3144
Bsu15I ATCGAT 2 cut(s) 246, 723
BsuI GTATCC 2 cut(s) 653, 1654
BsuRI GGCC 2 cut(s) 2829, 3051
BsuTUI ATCGAT 2 cut(s) 246, 723
BtgI CCRYGG 1 cut(s) 2184
BtgZI GCGATG 1 cut(s) 56
BtsCI GGATG 2 cut(s) 864, 1099
BtsI GCAGTG 2 cut(s) 2063, 2760
BtsIMutI CAGTG 7 cut(s) 36, 1139, 1689, 2063, 2331, 2760, 3018
BveI ACCTGC 1 cut(s) 2059
Cac8I GCNNGC 5 cut(s) 131, 1128, 1625, 2475, 2937
CaiI CAGNNNCTG 1 cut(s) 2216
CfoI GCGC 2 cut(s) 452, 2138
Cfr10I RCCGGY 2 cut(s) 78, 2880
Cfr13I GGNCC 3 cut(s) 24, 233, 2962
ClaI ATCGAT 2 cut(s) 246, 723
CseI GACGC 1 cut(s) 572
Csp6I GTAC 7 cut(s) 693, 1252, 1536, 2050, 2432, 3016, 3167
CviQI GTAC 7 cut(s) 693, 1252, 1536, 2050, 2432, 3016, 3167
DraI TTTAAA 3 cut(s) 312, 1471, 3196
EaeI YGGCCR 1 cut(s) 2827
Eam1104I CTCTTC 1 cut(s) 2270
EarI CTCTTC 1 cut(s) 2270
EciI GGCGGA 2 cut(s) 182, 668
Ecl136II GAGCTC 2 cut(s) 1154, 1550
Eco105I TACGTA 1 cut(s) 1009
Eco130I CCWWGG 1 cut(s) 2184
Eco24I GRGCYC 2 cut(s) 1156, 1552
Eco31I GGTCTC 2 cut(s) 587, 1326
Eco32I GATATC 2 cut(s) 1119, 2028
Eco47I GGWCC 3 cut(s) 24, 233, 2962
Eco47III AGCGCT 1 cut(s) 2137
Eco53kI GAGCTC 2 cut(s) 1154, 1550
Eco57I CTGAAG 4 cut(s) 864, 1713, 1776, 2733
Eco91I GGTNACC 1 cut(s) 2876
EcoICRI GAGCTC 2 cut(s) 1154, 1550
EcoO109I RGGNCCY 1 cut(s) 24
EcoO65I GGTNACC 1 cut(s) 2876
EcoRI GAATTC 2 cut(s) 2851, 2912
EcoRII CCWGG 3 cut(s) 800, 2574, 2824
EcoRV GATATC 2 cut(s) 1119, 2028
EcoT14I CCWWGG 1 cut(s) 2184
EcoT22I ATGCAT 7 cut(s) 876, 1482, 1612, 1892, 2088, 2866, 3178
EcoT38I GRGCYC 2 cut(s) 1156, 1552
ErhI CCWWGG 1 cut(s) 2184
FalI AAGNNNNNCTT 2 cut(s) 974, 1006
FauI CCCGC 1 cut(s) 2928
FauNDI CATATG 2 cut(s) 1276, 1612
FbaI TGATCA 1 cut(s) 2328
FblI GTMKAC 1 cut(s) 1867
FokI GGATG 2 cut(s) 851, 1106
FriOI GRGCYC 2 cut(s) 1156, 1552
GlaI GCGC 2 cut(s) 451, 2137
GsaI CCCAGC 1 cut(s) 956
GsuI CTGGAG 1 cut(s) 2115
HaeII RGCGCY 1 cut(s) 2139
HaeIII GGCC 2 cut(s) 2829, 3051
HapII CCGG 2 cut(s) 79, 2881
HgaI GACGC 1 cut(s) 572
HhaI GCGC 2 cut(s) 452, 2138
Hin6I GCGC 2 cut(s) 450, 2136
HinP1I GCGC 2 cut(s) 450, 2136
HincII GTYRAC 1 cut(s) 534
HindII GTYRAC 1 cut(s) 534
HpaII CCGG 2 cut(s) 79, 2881
HphI GGTGA 3 cut(s) 968, 2200, 2888
Hpy166II GTNNAC 7 cut(s) 43, 534, 701, 1713, 1868, 2115, 3016
Hpy188III TCNNGA 8 cut(s) 561, 587, 868, 882, 1157, 1168, 2699, 2977
Hpy8I GTNNAC 7 cut(s) 43, 534, 701, 1713, 1868, 2115, 3016
Hpy99I CGWCG 1 cut(s) 3142
HpyAV CCTTC 3 cut(s) 221, 1310, 2794
HpyCH4III ACNGT 6 cut(s) 40, 1187, 1202, 2054, 2966, 3013
HpyCH4IV ACGT 7 cut(s) 271, 599, 1008, 1809, 2730, 3082, 3137
HpySE526I ACGT 7 cut(s) 271, 599, 1008, 1809, 2730, 3082, 3137
HspAI GCGC 2 cut(s) 450, 2136
Ksp22I TGATCA 1 cut(s) 2328
LmnI GCTCC 1 cut(s) 1547
MaeII ACGT 7 cut(s) 271, 599, 1008, 1809, 2730, 3082, 3137
MaeIII GTNAC 9 cut(s) 404, 632, 1024, 1181, 1204, 1933, 2416, 2876, 2966
MbiI CCGCTC 1 cut(s) 2935
MfeI CAATTG 1 cut(s) 1209
MflI RGATCY 2 cut(s) 3004, 3144
MhlI GDGCHC 3 cut(s) 1156, 1552, 1629
MlyI GAGTC 4 cut(s) 434, 1680, 2626, 2711
MmeI TCCRAC 3 cut(s) 1525, 2816, 3032
Mph1103I ATGCAT 7 cut(s) 876, 1482, 1612, 1892, 2088, 2866, 3178
MroXI GAANNNNTTC 4 cut(s) 660, 852, 1458, 1569
MslI CAYNNNNRTG 9 cut(s) 138, 222, 869, 1009, 1092, 1275, 1634, 2352, 2423
MspA1I CMGCKG 2 cut(s) 964, 2942
MspCI CTTAAG 1 cut(s) 2638
MspI CCGG 2 cut(s) 79, 2881
MspR9I CCNGG 3 cut(s) 802, 2576, 2826
MunI CAATTG 1 cut(s) 1209
Mva1269I GAATGC 4 cut(s) 256, 276, 2326, 2864
MvaI CCWGG 3 cut(s) 802, 2576, 2826
NcoI CCATGG 1 cut(s) 2184
NdeI CATATG 2 cut(s) 1276, 1612
NheI GCTAGC 1 cut(s) 1126
NlaIV GGNNCC 4 cut(s) 1194, 2406, 2709, 3006
NmuCI GTSAC 4 cut(s) 404, 1181, 2416, 2876
NsiI ATGCAT 7 cut(s) 876, 1482, 1612, 1892, 2088, 2866, 3178
NspI RCATGY 2 cut(s) 1484, 2749
OliI CACNNNNGTG 2 cut(s) 138, 2423
PciI ACATGT 1 cut(s) 2745
PcsI WCGNNNNNNNCGW 2 cut(s) 277, 835
PctI GAATGC 4 cut(s) 256, 276, 2326, 2864
PdmI GAANNNNTTC 4 cut(s) 660, 852, 1458, 1569
PflMI CCANNNNNTGG 1 cut(s) 652
PleI GAGTC 4 cut(s) 434, 1680, 2626, 2711
PpsI GAGTC 4 cut(s) 434, 1680, 2626, 2711
Ppu21I YACGTR 2 cut(s) 1009, 3083
PpuMI RGGWCCY 1 cut(s) 24
PscI ACATGT 1 cut(s) 2745
PshBI ATTAAT 1 cut(s) 2795
Psp124BI GAGCTC 2 cut(s) 1156, 1552
Psp5II RGGWCCY 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 800, 2574, 2824
PspEI GGTNACC 1 cut(s) 2876
PspFI CCCAGC 1 cut(s) 952
PspGI CCWGG 3 cut(s) 800, 2574, 2824
PspN4I GGNNCC 4 cut(s) 1194, 2406, 2709, 3006
PspPI GGNCC 3 cut(s) 24, 233, 2962
PspPPI RGGWCCY 1 cut(s) 24
PstI CTGCAG 2 cut(s) 2070, 2131
PstNI CAGNNNCTG 1 cut(s) 2216
PsuI RGATCY 2 cut(s) 3004, 3144
PvuII CAGCTG 2 cut(s) 964, 2942
RsaI GTAC 7 cut(s) 694, 1253, 1537, 2051, 2433, 3017, 3168
RsaNI GTAC 7 cut(s) 693, 1252, 1536, 2050, 2432, 3016, 3167
RseI CAYNNNNRTG 9 cut(s) 138, 222, 869, 1009, 1092, 1275, 1634, 2352, 2423
SacI GAGCTC 2 cut(s) 1156, 1552
Sau96I GGNCC 3 cut(s) 24, 233, 2962
ScaI AGTACT 1 cut(s) 2433
SchI GAGTC 4 cut(s) 434, 1680, 2626, 2711
ScrFI CCNGG 3 cut(s) 802, 2576, 2826
SduI GDGCHC 3 cut(s) 1156, 1552, 1629
SfcI CTRYAG 3 cut(s) 1618, 2066, 2127
SinI GGWCC 3 cut(s) 24, 233, 2962
SmiMI CAYNNNNRTG 9 cut(s) 138, 222, 869, 1009, 1092, 1275, 1634, 2352, 2423
SmlI CTYRAG 4 cut(s) 322, 910, 1578, 2638
SmoI CTYRAG 4 cut(s) 322, 910, 1578, 2638
SnaBI TACGTA 1 cut(s) 1009
SpeI ACTAGT 2 cut(s) 695, 2509
SsiI CCGC 6 cut(s) 167, 679, 1362, 1665, 2830, 2935
SstI GAGCTC 2 cut(s) 1156, 1552
StyD4I CCNGG 3 cut(s) 800, 2574, 2824
StyI CCWWGG 1 cut(s) 2184
TaaI ACNGT 6 cut(s) 40, 1187, 1202, 2054, 2966, 3013
TaiI ACGT 7 cut(s) 274, 602, 1011, 1812, 2733, 3085, 3140
TatI WGTACW 4 cut(s) 1251, 1535, 2431, 3015
TauI GCSGC 1 cut(s) 2832
TscAI CASTG 7 cut(s) 43, 1139, 1696, 2070, 2338, 2760, 3018
TseFI GTSAC 4 cut(s) 404, 1181, 2416, 2876
Tsp45I GTSAC 4 cut(s) 404, 1181, 2416, 2876
TspGWI ACGGA 2 cut(s) 1906, 3089
TspRI CASTG 7 cut(s) 43, 1139, 1696, 2070, 2338, 2760, 3018
Van91I CCANNNNNTGG 1 cut(s) 652
Vha464I CTTAAG 1 cut(s) 2638
VpaK11BI GGWCC 3 cut(s) 24, 233, 2962
VspI ATTAAT 1 cut(s) 2795
XapI RAATTY 6 cut(s) 781, 885, 1370, 2585, 2851, 2912
XbaI TCTAGA 1 cut(s) 2698
XceI RCATGY 2 cut(s) 1484, 2749
XmiI GTMKAC 1 cut(s) 1867
XmnI GAANNNNTTC 4 cut(s) 660, 852, 1458, 1569
ZrmI AGTACT 1 cut(s) 2433
Zsp2I ATGCAT 7 cut(s) 876, 1482, 1612, 1892, 2088, 2866, 3178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.