Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016595

Physical Location & Seq

Genomic Coordinates Forward (+)

42879455 .. 42883507

Gene Structure 4053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2715 bp

ATGAGTGGGAGTGGGTGTCTCAGGTCCTTGATGCTCACTGTAAACCAATGCCACAACCCTATGTTCTTCCATCGCTACCGGCTTCATTTCAGAACCAAACCCAAACCCACCTCAGTTATCAATCTTCGCAAGCACTTTCGTGGGAGTGTAGTCAGTTTGAGCTTGGCGGAATATAGTAATGCAGCCAATGCTCGTGTTTCGGATGATTATCTAGTTCATCAAAATGAAGGTGGTCCAAAGGGGATCGATTTGTTGCATTCTATGGAAGCACGTTGCATTCGTGCCAATTCTCAGACATATATTTGGCTTTTAAAAGGGTGCTTGAGTTCTGGGTCTTTGTTAGATGCTAGGAAACTTCATTCTAGGATTTTGAAGTTGGGTTTTGGTGGAGAATATGAAATAAGTGACCTATTTGTCAGCGTTTATCTTGCGAATGGTGATTCATGCAGTGCAGTAAAGGTTTTTGATGATCTACCATATAGAAGTTTATTCTCATGGAATAACATAATTCATGGCTTTCTTGCAAAGAAGTTGACGGGACAAGTATTGGGTTTCTTTTCGCGAATGGTAGCAGAAAATGCGCTTCCTGATGAGACCACGTTTGCAGGAGTTTTAAGGGCGTGTGGTGGTGGTAACGCCAGTATCCAATATGTGGAACAGATTCATGCTAGGATTATCCGTCATTGTTTTGGTACTAATTTACTTGTATGTAATCCCTTGATCGATTTGTATGCTAAGAACGGCTCTGTGGATTCTGCTAAAAAAGTCTTCGATAAGTTGAATTTTAGGGATAGTGTTTCCTGGGTGGCTATAATTTCTGGCTTATCTCGTAATGGACGAGAAGAAGAAGCTGTTCTCCTATTCATCCAGATGCATACTTCAGGAATTTTCCCAACTCCTTATGTTTTCTCAAGCGTGATTAGTGCCTGTGCAAAAATAGAGTTATTTGAGCTGGGTGAGCAGCTGCAATGCCTTGTTTTCAAGGGAGGCTTTTCTTGTGAAACATACGTATGCAATGCTCTTGTAACATTATATTCCCGTTCAGGGAACTTCATATCTGCTGAACAAGTTTTCAATACAATGTGGCACAGGGATGGAGTATCATATAACTCATTGATATCTGGGCTAGCTCAGTGTGGATTTAGTGATAGAGCTCTGGAATTGTTCAAGAAAATGCAGAGTGACTGTATGGAACCTGACTGTGTAACAATTGCAAGTCTTTTGAGTGCCTGTGCATCAGTTGGTTATCTGTATAAGGGGAAACAACTCCACTCATATGCAATTAAAGCAGGAATGTCATCAGATATAATCCTCGAAGGGTCTCTGCTTGATCTTTATGTGAAATGCTCAGATTTGCAAACTGCCTATGAATTTTTCCTTACAACAGAGACAGAGAATGTTGTCCTGTGGAATGTGATGCTAGTTGCTTATGGGCAGCAAGATGACCTGAAAGAATCGTTTCATATTTTTAAACAAATGCATGTTGAGGGTATGATTCCTAATCAATATACATATCCGAGTATTTTGAGAACCTGTACTTCTGTTGGAGCTCTGAATTTAGGAGAACAGGTTCATACTCAAGCCATAAAAACTGGCTTTCAGTTTAATGCATATGTCTGTAGCGTGCTCATTGATATGTATGCTAAGCATGGAAAACTGGATACTGCCCTTGGAATACTCAGAAGACTCACTGAAGATGATGTTGTTTCGTGGACAGCTATGATTGCAGGGTATGCACAGCATGATTTGTTTGCTGAAGCTCTATTACTTTTTGAAGAAATGCAAAACCGAGGGATTCGATCTGACAACATAGGATTTTCAAGTGCAATTAGTTCATGTGCTGGTATTCAAGCACTCAATCAAGGTAGACAGATTCATGCTCAGTCATGCATATCTGGTTATTCGAATGATCTTTCTGTTGGCAATGCACTCGTTACCCTTTATGCTAGATGTGGTAGAATATGGGAAGCCTACCAAGCATTTGAGAAAATTGATGTGAAAGATAATATATCATGGAATGGACTGATATCAGGGTTTGGACAGAGTGGGTACTGTGAGGAAGCACTGCAGGTATTTTCTCAGATGCATCGAGCTGGAGTAGAAGCTAATTTGTTCACATTTGGCTCTGCAGTCAGCGCTGCTGCTAATTTAGCAAATATAAAACAAGGAGAGCAGATTCATGCCATGGTGATAAAAACTGGGAACAATTCAGAAGCTGAGGTTTCCAATGCTTTAATCACATTATACTCAAAGTGTGGTAGTGTTGATGATGCGAAGAGAGAGTTTATTGAAATGCCTGAAAAAAATGAGATTTCTTGGAATGCCATGATCACTGGCTATTCTCAGCATGGGCATGGTATTGAAGCACTGCATCTATTTGAGCAGATGAAACAACTTGGTGTGGTGCCAAGCCATGTCACATTTGTGGGAGTACTTTCAGCTTGTAGCCATGTAGGCTTGGTAAGTGAGGGGCTTGCATACTTTGAATCCATGAGCAAAGAGCATGGACTAGTGCCTAAGCCTGAGCATTATGCTTGTGTTGTTGATCTTCTTAGTCGAGCTGGTTCTTTGAGCCAGGCAAGAAAATTCATAACTGAGATGCCAATAAAACCAGATTCAATGATTTGGAGGACTCTCTTAAGTGCTTGTATAGCTAAAAAGAACACAGAAATTGGGGAGAAGACCAGGGACACTGATTCCATGCAGATTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

905

Amino Acids

99.92

Weight (kDa)

6.41

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	264 - 312	6e-08	PPR repeat family
PPR_2	PF13041	365 - 412	1.2e-08	PPR repeat family
PPR_1	PF12854	365 - 393	5.4e-06	PPR repeat
PPR	PF01535	367 - 395	4.6e-08	PPR repeat
PPR_2	PF13041	466 - 512	5.8e-09	PPR repeat family
PPR_2	PF13041	567 - 614	1.7e-09	PPR repeat family
PPR	PF01535	569 - 599	8e-08	PPR repeat
PPR_2	PF13041	668 - 712	7.3e-08	PPR repeat family
PPR	PF01535	670 - 700	1.9e-07	PPR repeat
PPR_2	PF13041	769 - 816	3.8e-11	PPR repeat family
PPR	PF01535	771 - 801	2.3e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13650
fragaria_vesca	FvH4_3g25260
malus_domestica	MD12G1002600.v1.1
prunus_persica	Prupe.7G002600_v2.0.a1
pyrus_communis	pycom12g00230
rosa_chinensis	RchiOBHm_Chr5g0046881
rosa_laevigata	RLG00000034452
rosa_roxburghii	Rroxscaffold_1G00034510
rosa_rugosa	Rorug05G0232400
rosa_samantha	Rh5AG311800 Rh5BG320800 Rh5CG346900 Rh5DG331500
rosa_wichuraiana	Rw5G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	413
Acc36I	ACCTGC	1 cut(s)	2059
AccB1I	GGYRCC	1 cut(s)	2404
AccB7I	CCANNNNNTGG	1 cut(s)	652
AccI	GTMKAC	1 cut(s)	1867
AccII	CGCG	1 cut(s)	562
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	1 cut(s)	251
AcsI	RAATTY	5 cut(s)	781, 885, 1370, 1555, 2585
AcuI	CTGAAG	3 cut(s)	864, 1713, 1776
AfaI	GTAC	4 cut(s)	694, 1537, 2051, 2433
AfeI	AGCGCT	1 cut(s)	2137
AfiI	CCNNNNNNNGG	2 cut(s)	652, 1044
AflII	CTTAAG	1 cut(s)	2638
AhlI	ACTAGT	1 cut(s)	2509
AjnI	CCWGG	3 cut(s)	800, 2574, 2684
AleI	CACNNNNGTG	2 cut(s)	138, 2423
AloI	GAACNNNNNNTCC	2 cut(s)	1554, 1586
Alw21I	GWGCWC	3 cut(s)	1156, 1552, 1629
Alw26I	GTCTC	4 cut(s)	23, 587, 1326, 1382
AlwI	GGATC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	2216
Aor51HI	AGCGCT	1 cut(s)	2137
ApeKI	GCWGC	6 cut(s)	182, 961, 964, 1435, 2138, 2141
ApoI	RAATTY	5 cut(s)	781, 885, 1370, 1555, 2585
Asp700I	GAANNNNTTC	4 cut(s)	660, 852, 1458, 1569
AspLEI	GCGC	2 cut(s)	583, 2138
AspS9I	GGNCC	2 cut(s)	24, 233
AsuHPI	GGTGA	3 cut(s)	449, 968, 2200
AsuII	TTCGAA	1 cut(s)	1904
AsuNHI	GCTAGC	1 cut(s)	1126
AvaII	GGWCC	2 cut(s)	24, 233
BaeI	ACNNNNGTAYC	2 cut(s)	625, 658
BanI	GGYRCC	1 cut(s)	2404
BanII	GRGCYC	2 cut(s)	1156, 1552
BarI	GAAGNNNNNNTAC	2 cut(s)	1749, 1781
BauI	CACGAG	1 cut(s)	192
BbsI	GAAGAC	3 cut(s)	760, 1690, 2687
Bbv12I	GWGCWC	3 cut(s)	1156, 1552, 1629
BbvCI	CCTCAGC	1 cut(s)	2217
BbvI	GCAGC	6 cut(s)	194, 951, 973, 1447, 2125, 2128
BccI	CCATC	2 cut(s)	78, 1088
BceAI	ACGGC	1 cut(s)	757
BcgI	CGANNNNNNTGC	4 cut(s)	713, 747, 1912, 1946
BciT130I	CCWGG	3 cut(s)	802, 2576, 2686
BciVI	GTATCC	2 cut(s)	653, 1654
BclI	TGATCA	1 cut(s)	2328
BcoDI	GTCTC	4 cut(s)	23, 587, 1326, 1382
BcuI	ACTAGT	1 cut(s)	2509
BfaI	CTAG	8 cut(s)	212, 348, 363, 669, 1127, 1421, 1947, 2510
BfmI	CTRYAG	3 cut(s)	1618, 2066, 2127
BfoI	RGCGCY	1 cut(s)	2139
BfrI	CTTAAG	1 cut(s)	2638
BfuAI	ACCTGC	1 cut(s)	2059
BfuI	GTATCC	2 cut(s)	653, 1654
BglI	GCCNNNNNGGC	1 cut(s)	2454
BisI	GCNGC	6 cut(s)	183, 962, 965, 1436, 2139, 2142
BlpI	GCTNAGC	1 cut(s)	1644
BlsI	GCNGC	6 cut(s)	184, 963, 966, 1437, 2140, 2143
BmcAI	AGTACT	1 cut(s)	2433
Bme1390I	CCNGG	3 cut(s)	802, 2576, 2686
Bme18I	GGWCC	2 cut(s)	24, 233
BmgT120I	GGNCC	2 cut(s)	24, 233
BmiI	GGNNCC	2 cut(s)	1194, 2406
BmrFI	CCNGG	3 cut(s)	802, 2576, 2686
BmrI	ACTGGG	1 cut(s)	2208
BmtI	GCTAGC	1 cut(s)	1130
BmuI	ACTGGG	1 cut(s)	2208
BpiI	GAAGAC	3 cut(s)	760, 1690, 2687
BpmI	CTGGAG	1 cut(s)	2115
Bpu10I	CCTNAGC	3 cut(s)	2217, 2517, 2523
Bpu1102I	GCTNAGC	1 cut(s)	1644
Bpu14I	TTCGAA	1 cut(s)	1904
BpuEI	CTTGAG	3 cut(s)	343, 895, 1563
Bsa29I	ATCGAT	2 cut(s)	246, 723
BsaAI	YACGTR	1 cut(s)	1009
BsaBI	GATNNNNATC	1 cut(s)	207
BsaI	GGTCTC	2 cut(s)	587, 1326
BsaJI	CCNNGG	5 cut(s)	801, 1669, 1789, 2184, 2685
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 1554, 1584
Bsc4I	CCNNNNNNNGG	2 cut(s)	652, 1044
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	5 cut(s)	639, 1597, 1662, 2203, 2338
Bse3DI	GCAATG	3 cut(s)	974, 1021, 1930
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	3 cut(s)	802, 2576, 2686
BseCI	ATCGAT	2 cut(s)	246, 723
BseDI	CCNNGG	5 cut(s)	801, 1669, 1789, 2184, 2685
BseGI	GGATG	3 cut(s)	208, 864, 1099
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	652, 1044
BseMI	GCAATG	3 cut(s)	974, 1021, 1930
BseNI	ACTGG	5 cut(s)	639, 1597, 1662, 2203, 2338
BseXI	GCAGC	6 cut(s)	194, 951, 973, 1447, 2125, 2128
BseYI	CCCAGC	1 cut(s)	952
BsgI	GTGCAG	1 cut(s)	471
Bsh1236I	CGCG	1 cut(s)	562
BshNI	GGYRCC	1 cut(s)	2404
BshVI	ATCGAT	2 cut(s)	246, 723
BsiHKAI	GWGCWC	3 cut(s)	1156, 1552, 1629
BsiSI	CCGG	1 cut(s)	79
BslFI	GGGAC	2 cut(s)	552, 2702
BslI	CCNNNNNNNGG	2 cut(s)	652, 1044
BsmAI	GTCTC	4 cut(s)	23, 587, 1326, 1382
BsmFI	GGGAC	2 cut(s)	552, 2702
BsmI	GAATGC	3 cut(s)	256, 276, 2326
Bso31I	GGTCTC	2 cut(s)	587, 1326
Bsp119I	TTCGAA	1 cut(s)	1904
Bsp1286I	GDGCHC	3 cut(s)	1156, 1552, 1629
Bsp143I	GATC	8 cut(s)	243, 469, 720, 1330, 1799, 1909, 2328, 2545
Bsp1720I	GCTNAGC	1 cut(s)	1644
Bsp19I	CCATGG	1 cut(s)	2184
Bsp68I	TCGCGA	1 cut(s)	562
BspACI	CCGC	1 cut(s)	167
BspDI	ATCGAT	2 cut(s)	246, 723
BspFNI	CGCG	1 cut(s)	562
BspLI	GGNNCC	2 cut(s)	1194, 2406
BspMAI	CTGCAG	2 cut(s)	2070, 2131
BspMI	ACCTGC	1 cut(s)	2059
BspOI	GCTAGC	1 cut(s)	1130
BspPI	GGATC	1 cut(s)	251
BspT104I	TTCGAA	1 cut(s)	1904
BspT107I	GGYRCC	1 cut(s)	2404
BspTI	CTTAAG	1 cut(s)	2638
BspTNI	GGTCTC	2 cut(s)	587, 1326
BsrDI	GCAATG	3 cut(s)	974, 1021, 1930
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	5 cut(s)	639, 1597, 1662, 2203, 2338
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	5 cut(s)	801, 1669, 1789, 2184, 2685
BssMI	GATC	8 cut(s)	243, 469, 720, 1330, 1799, 1909, 2328, 2545
BssSI	CACGAG	1 cut(s)	192
BssT1I	CCWWGG	2 cut(s)	1669, 2184
Bst2BI	CACGAG	1 cut(s)	192
Bst2UI	CCWGG	3 cut(s)	802, 2576, 2686
Bst4CI	ACNGT	4 cut(s)	40, 1187, 1202, 2054
Bst6I	CTCTTC	1 cut(s)	2270
BstAFI	CTTAAG	1 cut(s)	2638
BstAPI	GCANNNNNTGC	3 cut(s)	188, 578, 1733
BstBAI	YACGTR	1 cut(s)	1009
BstBI	TTCGAA	1 cut(s)	1904
BstC8I	GCNNGC	4 cut(s)	131, 1128, 1625, 2475
BstDSI	CCRYGG	1 cut(s)	2184
BstF5I	GGATG	3 cut(s)	208, 864, 1099
BstFNI	CGCG	1 cut(s)	562
BstH2I	RGCGCY	1 cut(s)	2139
BstHHI	GCGC	2 cut(s)	583, 2138
BstKTI	GATC	8 cut(s)	246, 472, 723, 1333, 1802, 1912, 2331, 2548
BstMAI	GTCTC	4 cut(s)	23, 587, 1326, 1382
BstMBI	GATC	8 cut(s)	243, 469, 720, 1330, 1799, 1909, 2328, 2545
BstNI	CCWGG	3 cut(s)	802, 2576, 2686
BstNSI	RCATGY	1 cut(s)	1484
BstSCI	CCNGG	3 cut(s)	800, 2574, 2684
BstSFI	CTRYAG	3 cut(s)	1618, 2066, 2127
BstSNI	TACGTA	1 cut(s)	1009
BstUI	CGCG	1 cut(s)	562
BstV1I	GCAGC	6 cut(s)	194, 951, 973, 1447, 2125, 2128
BstV2I	GAAGAC	3 cut(s)	760, 1690, 2687
Bsu15I	ATCGAT	2 cut(s)	246, 723
BsuI	GTATCC	2 cut(s)	653, 1654
BsuTUI	ATCGAT	2 cut(s)	246, 723
BtgI	CCRYGG	1 cut(s)	2184
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	3 cut(s)	208, 864, 1099
BtsI	GCAGTG	3 cut(s)	454, 2063, 2366
BtsIMutI	CAGTG	8 cut(s)	36, 454, 1139, 1689, 2063, 2331, 2366, 2691
BtuMI	TCGCGA	1 cut(s)	562
BveI	ACCTGC	1 cut(s)	2059
Cac8I	GCNNGC	4 cut(s)	131, 1128, 1625, 2475
CaiI	CAGNNNCTG	1 cut(s)	2216
CfoI	GCGC	2 cut(s)	583, 2138
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	24, 233
ClaI	ATCGAT	2 cut(s)	246, 723
Csp6I	GTAC	4 cut(s)	693, 1536, 2050, 2432
CviQI	GTAC	4 cut(s)	693, 1536, 2050, 2432
DpnI	GATC	8 cut(s)	245, 471, 722, 1332, 1801, 1911, 2330, 2547
DpnII	GATC	8 cut(s)	243, 469, 720, 1330, 1799, 1909, 2328, 2545
DraI	TTTAAA	2 cut(s)	312, 1471
DrdI	GACNNNNNNGTC	1 cut(s)	413
DseDI	GACNNNNNNGTC	1 cut(s)	413
Eam1104I	CTCTTC	1 cut(s)	2270
EarI	CTCTTC	1 cut(s)	2270
EciI	GGCGGA	1 cut(s)	182
Ecl136II	GAGCTC	2 cut(s)	1154, 1550
Eco105I	TACGTA	1 cut(s)	1009
Eco130I	CCWWGG	2 cut(s)	1669, 2184
Eco24I	GRGCYC	2 cut(s)	1156, 1552
Eco31I	GGTCTC	2 cut(s)	587, 1326
Eco32I	GATATC	2 cut(s)	1119, 2028
Eco47I	GGWCC	2 cut(s)	24, 233
Eco47III	AGCGCT	1 cut(s)	2137
Eco53kI	GAGCTC	2 cut(s)	1154, 1550
Eco57I	CTGAAG	3 cut(s)	864, 1713, 1776
EcoICRI	GAGCTC	2 cut(s)	1154, 1550
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	3 cut(s)	800, 2574, 2684
EcoRV	GATATC	2 cut(s)	1119, 2028
EcoT14I	CCWWGG	2 cut(s)	1669, 2184
EcoT22I	ATGCAT	5 cut(s)	876, 1482, 1612, 1892, 2088
EcoT38I	GRGCYC	2 cut(s)	1156, 1552
ErhI	CCWWGG	2 cut(s)	1669, 2184
FalI	AAGNNNNNCTT	2 cut(s)	974, 1006
FaqI	GGGAC	2 cut(s)	552, 2702
FauNDI	CATATG	2 cut(s)	1276, 1612
FbaI	TGATCA	1 cut(s)	2328
FblI	GTMKAC	1 cut(s)	1867
Fnu4HI	GCNGC	6 cut(s)	183, 962, 965, 1436, 2139, 2142
FokI	GGATG	3 cut(s)	215, 851, 1106
FriOI	GRGCYC	2 cut(s)	1156, 1552
Fsp4HI	GCNGC	6 cut(s)	183, 962, 965, 1436, 2139, 2142
FspBI	CTAG	8 cut(s)	212, 348, 363, 669, 1127, 1421, 1947, 2510
GlaI	GCGC	2 cut(s)	582, 2137
GluI	GCNGC	6 cut(s)	183, 962, 965, 1436, 2139, 2142
GsaI	CCCAGC	1 cut(s)	956
GsuI	CTGGAG	1 cut(s)	2115
HaeII	RGCGCY	1 cut(s)	2139
HapII	CCGG	1 cut(s)	79
HhaI	GCGC	2 cut(s)	583, 2138
Hin6I	GCGC	2 cut(s)	581, 2136
HinP1I	GCGC	2 cut(s)	581, 2136
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	3 cut(s)	449, 968, 2200
Hpy166II	GTNNAC	5 cut(s)	43, 534, 1713, 1868, 2115
Hpy188III	TCNNGA	6 cut(s)	561, 587, 868, 882, 1157, 1168
Hpy8I	GTNNAC	5 cut(s)	43, 534, 1713, 1868, 2115
HpyAV	CCTTC	2 cut(s)	221, 1310
HpyCH4III	ACNGT	4 cut(s)	40, 1187, 1202, 2054
HpyCH4IV	ACGT	3 cut(s)	271, 599, 1008
HpySE526I	ACGT	3 cut(s)	271, 599, 1008
HspAI	GCGC	2 cut(s)	581, 2136
Ksp22I	TGATCA	1 cut(s)	2328
Kzo9I	GATC	8 cut(s)	243, 469, 720, 1330, 1799, 1909, 2328, 2545
LmnI	GCTCC	1 cut(s)	1547
Lsp1109I	GCAGC	6 cut(s)	194, 951, 973, 1447, 2125, 2128
MaeI	CTAG	8 cut(s)	212, 348, 363, 669, 1127, 1421, 1947, 2510
MaeII	ACGT	3 cut(s)	271, 599, 1008
MaeIII	GTNAC	7 cut(s)	404, 632, 1024, 1181, 1204, 1933, 2416
MalI	GATC	8 cut(s)	245, 471, 722, 1332, 1801, 1911, 2330, 2547
MboI	GATC	8 cut(s)	243, 469, 720, 1330, 1799, 1909, 2328, 2545
MfeI	CAATTG	1 cut(s)	1209
MhlI	GDGCHC	3 cut(s)	1156, 1552, 1629
MlyI	GAGTC	2 cut(s)	1680, 2626
MmeI	TCCRAC	1 cut(s)	1525
MnlI	CCTC	9 cut(s)	121, 980, 1322, 1480, 1784, 2050, 2212, 2461, 2622
Mph1103I	ATGCAT	5 cut(s)	876, 1482, 1612, 1892, 2088
MroXI	GAANNNNTTC	4 cut(s)	660, 852, 1458, 1569
MseI	TTAA	7 cut(s)	311, 614, 1284, 1470, 1605, 2234, 2639
MslI	CAYNNNNRTG	9 cut(s)	138, 222, 869, 1009, 1092, 1275, 1634, 2352, 2423
MspA1I	CMGCKG	1 cut(s)	964
MspCI	CTTAAG	1 cut(s)	2638
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	3 cut(s)	802, 2576, 2686
MunI	CAATTG	1 cut(s)	1209
Mva1269I	GAATGC	3 cut(s)	256, 276, 2326
MvaI	CCWGG	3 cut(s)	802, 2576, 2686
MvnI	CGCG	1 cut(s)	562
NcoI	CCATGG	1 cut(s)	2184
NdeI	CATATG	2 cut(s)	1276, 1612
NdeII	GATC	8 cut(s)	243, 469, 720, 1330, 1799, 1909, 2328, 2545
NheI	GCTAGC	1 cut(s)	1126
NlaIV	GGNNCC	2 cut(s)	1194, 2406
NmuCI	GTSAC	3 cut(s)	404, 1181, 2416
NruI	TCGCGA	1 cut(s)	562
NsiI	ATGCAT	5 cut(s)	876, 1482, 1612, 1892, 2088
NspI	RCATGY	1 cut(s)	1484
NspV	TTCGAA	1 cut(s)	1904
OliI	CACNNNNGTG	2 cut(s)	138, 2423
PcsI	WCGNNNNNNNCGW	2 cut(s)	277, 835
PctI	GAATGC	3 cut(s)	256, 276, 2326
PdmI	GAANNNNTTC	4 cut(s)	660, 852, 1458, 1569
PflMI	CCANNNNNTGG	1 cut(s)	652
PkrI	GCNGC	6 cut(s)	184, 963, 966, 1437, 2140, 2143
PleI	GAGTC	2 cut(s)	1680, 2626
PpsI	GAGTC	2 cut(s)	1680, 2626
Ppu21I	YACGTR	1 cut(s)	1009
PpuMI	RGGWCCY	1 cut(s)	24
Psp124BI	GAGCTC	2 cut(s)	1156, 1552
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	3 cut(s)	800, 2574, 2684
PspFI	CCCAGC	1 cut(s)	952
PspGI	CCWGG	3 cut(s)	800, 2574, 2684
PspN4I	GGNNCC	2 cut(s)	1194, 2406
PspPI	GGNCC	2 cut(s)	24, 233
PspPPI	RGGWCCY	1 cut(s)	24
PstI	CTGCAG	2 cut(s)	2070, 2131
PstNI	CAGNNNCTG	1 cut(s)	2216
PvuII	CAGCTG	1 cut(s)	964
RruI	TCGCGA	1 cut(s)	562
RsaI	GTAC	4 cut(s)	694, 1537, 2051, 2433
RsaNI	GTAC	4 cut(s)	693, 1536, 2050, 2432
RseI	CAYNNNNRTG	9 cut(s)	138, 222, 869, 1009, 1092, 1275, 1634, 2352, 2423
SacI	GAGCTC	2 cut(s)	1156, 1552
SaqAI	TTAA	7 cut(s)	311, 614, 1284, 1470, 1605, 2234, 2639
SatI	GCNGC	6 cut(s)	183, 962, 965, 1436, 2139, 2142
Sau3AI	GATC	8 cut(s)	243, 469, 720, 1330, 1799, 1909, 2328, 2545
Sau96I	GGNCC	2 cut(s)	24, 233
ScaI	AGTACT	1 cut(s)	2433
SchI	GAGTC	2 cut(s)	1680, 2626
ScrFI	CCNGG	3 cut(s)	802, 2576, 2686
SduI	GDGCHC	3 cut(s)	1156, 1552, 1629
SfcI	CTRYAG	3 cut(s)	1618, 2066, 2127
SfuI	TTCGAA	1 cut(s)	1904
SinI	GGWCC	2 cut(s)	24, 233
SmiMI	CAYNNNNRTG	9 cut(s)	138, 222, 869, 1009, 1092, 1275, 1634, 2352, 2423
SmlI	CTYRAG	4 cut(s)	322, 910, 1578, 2638
SmoI	CTYRAG	4 cut(s)	322, 910, 1578, 2638
SnaBI	TACGTA	1 cut(s)	1009
SpeI	ACTAGT	1 cut(s)	2509
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	8 cut(s)	212, 348, 363, 669, 1127, 1421, 1947, 2510
SstI	GAGCTC	2 cut(s)	1156, 1552
StyD4I	CCNGG	3 cut(s)	800, 2574, 2684
StyI	CCWWGG	2 cut(s)	1669, 2184
TaaI	ACNGT	4 cut(s)	40, 1187, 1202, 2054
TaiI	ACGT	3 cut(s)	274, 602, 1011
TaqI	TCGA	8 cut(s)	246, 723, 771, 1314, 1798, 1904, 2089, 2557
TatI	WGTACW	2 cut(s)	1535, 2431
Tru1I	TTAA	7 cut(s)	311, 614, 1284, 1470, 1605, 2234, 2639
Tru9I	TTAA	7 cut(s)	311, 614, 1284, 1470, 1605, 2234, 2639
TscAI	CASTG	8 cut(s)	43, 454, 1139, 1696, 2070, 2338, 2373, 2698
TseFI	GTSAC	3 cut(s)	404, 1181, 2416
TseI	GCWGC	6 cut(s)	182, 961, 964, 1435, 2138, 2141
Tsp45I	GTSAC	3 cut(s)	404, 1181, 2416
TspGWI	ACGGA	1 cut(s)	668
TspRI	CASTG	8 cut(s)	43, 454, 1139, 1696, 2070, 2338, 2373, 2698
Van91I	CCANNNNNTGG	1 cut(s)	652
Vha464I	CTTAAG	1 cut(s)	2638
VpaK11BI	GGWCC	2 cut(s)	24, 233
XapI	RAATTY	5 cut(s)	781, 885, 1370, 1555, 2585
XceI	RCATGY	1 cut(s)	1484
XmiI	GTMKAC	1 cut(s)	1867
XmnI	GAANNNNTTC	4 cut(s)	660, 852, 1458, 1569
XspI	CTAG	8 cut(s)	212, 348, 363, 669, 1127, 1421, 1947, 2510
ZrmI	AGTACT	1 cut(s)	2433
Zsp2I	ATGCAT	5 cut(s)	876, 1482, 1612, 1892, 2088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.