Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012219

Physical Location & Seq

Genomic Coordinates Forward (+)

8010967 .. 8012880

Gene Structure 1914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAAATGTTACAAAAGCTCATCAATTCTCTCAACCAATCACCACCCATTCTTCTACAAACAACAACCAATCTCCTCTCTTCAACCAACTTCAATCCCAACAACTATCTCTTACCCAACCCGAACCCGATTCTCCTCCACCCGGATCCAATCTCGATTAACCCACGACGATCCAGTAAAACAATCGGAAGACTTATCCTTCTACGATCTTCTCGGCGTCACCGAATCAGTCACACTCCCAGAAATCAAACAAGCTTATAAACAACTAGCTCGAAAATATCACCCCGATGTTTCTCCTCCGGATCGTGTCGAAGAATACACAGATCGGTTTATTCGTGTTCAAGAAGCTTACGAAACTCTCTCCGATCCTCGCCGGAGAGTTTTATATGACCGTGATTTGTCTATGGGGTTTTCTTTTTCTTTCTCCGGTCGACGCCAGAACCGTTACGATCAGGTAATTAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006109 GO:0006457 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010322 GO:0010565 GO:0010675 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046890 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051338 GO:0061077 GO:0062012 GO:0065007 GO:0065009 GO:0071071 GO:0080090 GO:1902395 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

155

Amino Acids

18.29

Weight (kDa)

9.18

Isoelectric Point (pI)

67.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	67 - 130	1.1e-20	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13830 AT4G13830 AT4G13830
fragaria_vesca	FvH4_4g13370
malus_domestica	MD04G1016600.v1.1
prunus_persica	Prupe.1G163300_v2.0.a1 Prupe.1G163300_v2.0.a1 Prupe.1G204200_v2.0.a1
pyrus_communis	pycom04g01270
rosa_chinensis	RchiOBHm_Chr4g0413741
rosa_laevigata	RLG00000008197
rosa_multiflora	Rmu_co8100182.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357660
rosa_rugosa	Rorug04G0122800
rosa_samantha	Rh4AG182200 Rh4BG181300 Rh4CG193400 Rh4DG177800
rosa_wichuraiana	Rw4G015250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	430
AccIII	TCCGGA	1 cut(s)	298
AclWI	GGATC	5 cut(s)	139, 152, 164, 309, 359
AcyI	GRCGYC	2 cut(s)	216, 433
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	3 cut(s)	83, 93, 341
AluBI	AGCT	4 cut(s)	18, 254, 269, 347
AluI	AGCT	4 cut(s)	18, 254, 269, 347
AlwI	GGATC	5 cut(s)	139, 152, 164, 309, 359
Aor13HI	TCCGGA	1 cut(s)	298
AseI	ATTAAT	1 cut(s)	459
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	3 cut(s)	32, 211, 272
BamHI	GGATCC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	142
BfaI	CTAG	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	142
BsaHI	GRCGYC	2 cut(s)	216, 433
BsaWI	WCCGGW	2 cut(s)	298, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	173
BseAI	TCCGGA	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	3 cut(s)	64, 124, 285
Bsh1285I	CGRYCG	1 cut(s)	430
BsiEI	CGRYCG	1 cut(s)	430
BsiSI	CCGG	4 cut(s)	142, 299, 373, 426
BslI	CCNNNNNNNGG	1 cut(s)	141
Bsp13I	TCCGGA	1 cut(s)	298
Bsp143I	GATC	7 cut(s)	144, 169, 205, 301, 322, 364, 448
BspEI	TCCGGA	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	146
BspPI	GGATC	5 cut(s)	139, 152, 164, 309, 359
BsrI	ACTGG	1 cut(s)	173
BssMI	GATC	7 cut(s)	144, 169, 205, 301, 322, 364, 448
BssNI	GRCGYC	2 cut(s)	216, 433
Bst4CI	ACNGT	2 cut(s)	392, 443
Bst6I	CTCTTC	1 cut(s)	84
BstACI	GRCGYC	2 cut(s)	216, 433
BstKTI	GATC	7 cut(s)	147, 172, 208, 304, 325, 367, 451
BstMBI	GATC	7 cut(s)	144, 169, 205, 301, 322, 364, 448
BstMCI	CGRYCG	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
CseI	GACGC	2 cut(s)	205, 441
CviJI	RGCY	4 cut(s)	18, 254, 269, 347
CviKI_1	RGCY	4 cut(s)	18, 254, 269, 347
DpnI	GATC	7 cut(s)	146, 171, 207, 303, 324, 366, 450
DpnII	GATC	7 cut(s)	144, 169, 205, 301, 322, 364, 448
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
FaiI	YATR	4 cut(s)	258, 385, 387, 404
FblI	GTMKAC	1 cut(s)	430
FspBI	CTAG	1 cut(s)	266
HapII	CCGG	4 cut(s)	142, 299, 373, 426
HgaI	GACGC	2 cut(s)	205, 441
Hin1I	GRCGYC	2 cut(s)	216, 433
HincII	GTYRAC	1 cut(s)	431
HindII	GTYRAC	1 cut(s)	431
HindIII	AAGCTT	2 cut(s)	252, 345
HinfI	GANTC	2 cut(s)	129, 224
HpaII	CCGG	4 cut(s)	142, 299, 373, 426
HphI	GGTGA	3 cut(s)	32, 211, 272
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	2 cut(s)	187, 364
Hpy188III	TCNNGA	3 cut(s)	153, 299, 341
Hpy8I	GTNNAC	1 cut(s)	431
Hpy99I	CGWCG	2 cut(s)	170, 435
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	392, 443
Hsp92I	GRCGYC	2 cut(s)	216, 433
Kpn2I	TCCGGA	1 cut(s)	298
Kzo9I	GATC	7 cut(s)	144, 169, 205, 301, 322, 364, 448
LpnPI	CCDG	8 cut(s)	155, 186, 252, 312, 386, 437, 439, 449
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	4 cut(s)	8, 217, 229, 443
MalI	GATC	7 cut(s)	146, 171, 207, 303, 324, 366, 450
MboI	GATC	7 cut(s)	144, 169, 205, 301, 322, 364, 448
MboII	GAAGA	5 cut(s)	43, 71, 200, 200, 323
MflI	RGATCY	1 cut(s)	144
MluCI	AATT	3 cut(s)	24, 456, 460
MnlI	CCTC	4 cut(s)	85, 145, 306, 378
MroI	TCCGGA	1 cut(s)	298
MseI	TTAA	3 cut(s)	158, 459, 466
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	4 cut(s)	142, 299, 373, 426
MspR9I	CCNGG	1 cut(s)	142
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	7 cut(s)	144, 169, 205, 301, 322, 364, 448
NlaIV	GGNNCC	1 cut(s)	146
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	2 cut(s)	217, 229
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 331, 439
PfeI	GAWTC	2 cut(s)	129, 224
PshBI	ATTAAT	1 cut(s)	459
PsiI	TTATAA	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	285
SalI	GTCGAC	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	158, 459, 466
Sau3AI	GATC	7 cut(s)	144, 169, 205, 301, 322, 364, 448
ScrFI	CCNGG	1 cut(s)	142
SetI	ASST	5 cut(s)	20, 256, 271, 349, 456
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	3 cut(s)	24, 456, 460
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	140
TaaI	ACNGT	2 cut(s)	392, 443
TaqI	TCGA	4 cut(s)	154, 271, 309, 430
TasI	AATT	3 cut(s)	24, 456, 460
TfiI	GAWTC	2 cut(s)	129, 224
Tru1I	TTAA	3 cut(s)	158, 459, 466
Tru9I	TTAA	3 cut(s)	158, 459, 466
TseFI	GTSAC	2 cut(s)	217, 229
Tsp45I	GTSAC	2 cut(s)	217, 229
TspDTI	ATGAA	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	459
XmiI	GTMKAC	1 cut(s)	430
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.