RLG00000008197

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012219
Physical Location & Seq
Forward (+)
26933208 .. 26934450
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008197

Sequence Viewer

Length: 609 bp
ATGCCAAGCTACGGCTTGACCATCCCGGGACCCGATTCCCGCCTCTACGTCACCACCATCTCCACCGCCCGACCCGCGCCCGACCCGAAACCCAGTTCGCTGCCGGTGTTCTCGTCCCGGGCGACCCGGTTCGGGTCGATCAAGGCGGCGGCGACGATGAATGACGCCGCGGCGGCGGCGGCGGCGGAGGAGCGGAAGGAGCTGTCGTTTTACGAGCTGCTGGGGATACCCGAGTCCGGATCCATAACGGAGATCAAGCAGGCGTACAAGCAGCTGGCAAGGAAGTACCACCCGGACGTGTCGCCGCCGGGTCGGGTCGAGGAGTATACGGAGAAGTTTATTCGGGTTCAGGAGGCGTATGAGACGTTGTCGGATTCGAGGAGGAGGGCTATGTATGATCAGGACATGGCTAGGGGTCTTCACCTTGCCTTCTCTGCAAGAAGATACCAATATGATGAGGGAATGGAAGAAAGGGGTGACTGGAAGAATCGCTGGCAAAGCCAGCTATCTGAGCTGAAGAGAAGAAGCTCATACAAGGATGATGGACAAAATATGTCATGGGGAGCTAGAATGCGTCGGCAAAGAGAGGGACTGTCTGATGAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

203

Amino Acids

23.03

Weight (kDa)

9.02

Isoelectric Point (pI)

69.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 70 - 133 5.6e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13830 AT4G13830 AT4G13830
fragaria_vesca FvH4_4g13370
malus_domestica MD04G1016600.v1.1
prunus_persica Prupe.1G163300_v2.0.a1 Prupe.1G163300_v2.0.a1 Prupe.1G204200_v2.0.a1
pyrus_communis pycom04g01270
rosa_chinensis RchiOBHm_Chr4g0413741
rosa_laevigata RLG00000008197
rosa_multiflora Rmu_co8100182.1_g000001
rosa_roxburghii Rroxscaffold_5G00357660
rosa_rugosa Rorug04G0122800
rosa_samantha Rh4AG182200 Rh4BG181300 Rh4CG193400 Rh4DG177800
rosa_wichuraiana Rw4G015250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 193
AccI GTMKAC 1 cut(s) 326
AccII CGCG 2 cut(s) 77, 170
AccIII TCCGGA 1 cut(s) 236
AclWI GGATC 2 cut(s) 234, 247
AcuI CTGAAG 1 cut(s) 536
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 2 cut(s) 266, 287
AfiI CCNNNNNNNGG 3 cut(s) 11, 132, 236
AflIII ACRYGT 1 cut(s) 297
AjiI CACGTC 1 cut(s) 298
AluBI AGCT 8 cut(s) 9, 202, 217, 274, 505, 514, 528, 566
AluI AGCT 8 cut(s) 9, 202, 217, 274, 505, 514, 528, 566
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 2 cut(s) 234, 247
Ama87I CYCGRG 3 cut(s) 25, 117, 230
Aor13HI TCCGGA 1 cut(s) 236
ApeKI GCWGC 3 cut(s) 100, 217, 271
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 29
AsuC2I CCSGG 7 cut(s) 26, 27, 118, 119, 127, 293, 309
AsuHPI GGTGA 3 cut(s) 43, 413, 488
AvaI CYCGRG 3 cut(s) 25, 117, 230
AvaII GGWCC 1 cut(s) 29
BaeI ACNNNNGTAYC 2 cut(s) 218, 251
BamHI GGATCC 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 410
BbvI GCAGC 3 cut(s) 87, 204, 283
BccI CCATC 3 cut(s) 29, 65, 536
BceAI ACGGC 1 cut(s) 28
BciVI GTATCC 1 cut(s) 219
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 7 cut(s) 26, 27, 118, 119, 127, 293, 309
BcoDI GTCTC 1 cut(s) 356
BfaI CTAG 2 cut(s) 411, 567
BfuI GTATCC 1 cut(s) 219
BglI GCCNNNNNGGC 1 cut(s) 173
Bme1390I CCNGG 7 cut(s) 26, 27, 118, 119, 127, 293, 309
Bme18I GGWCC 1 cut(s) 29
BmeT110I CYCGRG 3 cut(s) 25, 117, 230
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 3 cut(s) 30, 31, 241
BmrFI CCNGG 7 cut(s) 26, 27, 118, 119, 127, 293, 309
BmrI ACTGGG 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 410
BpuMI CCSGG 7 cut(s) 26, 27, 118, 119, 127, 293, 309
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 25, 117, 168
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 132, 236
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 2 cut(s) 93, 485
BseAI TCCGGA 1 cut(s) 236
BseDI CCNNGG 3 cut(s) 25, 117, 168
BseGI GGATG 2 cut(s) 21, 544
BseLI CCNNNNNNNGG 3 cut(s) 11, 132, 236
BseMII CTCAG 1 cut(s) 501
BseNI ACTGG 2 cut(s) 93, 485
BseRI GAGGAG 4 cut(s) 203, 335, 394, 397
BseXI GCAGC 3 cut(s) 87, 204, 283
BseYI CCCAGC 1 cut(s) 220
Bsh1236I CGCG 2 cut(s) 77, 170
BsiHKCI CYCGRG 3 cut(s) 25, 117, 230
BsiSI CCGG 7 cut(s) 26, 104, 118, 127, 237, 293, 308
BslFI GGGAC 3 cut(s) 42, 100, 603
BslI CCNNNNNNNGG 3 cut(s) 11, 132, 236
BsmAI GTCTC 1 cut(s) 356
BsmBI CGTCTC 1 cut(s) 356
BsmFI GGGAC 3 cut(s) 42, 100, 603
BsmI GAATGC 1 cut(s) 576
BsoBI CYCGRG 3 cut(s) 25, 117, 230
Bsp13I TCCGGA 1 cut(s) 236
Bsp143I GATC 4 cut(s) 138, 239, 252, 397
BspCNI CTCAG 1 cut(s) 502
BspEI TCCGGA 1 cut(s) 236
BspFNI CGCG 2 cut(s) 77, 170
BspLI GGNNCC 3 cut(s) 30, 31, 241
BspPI GGATC 2 cut(s) 234, 247
BsrBI CCGCTC 1 cut(s) 193
BsrFI RCCGGY 1 cut(s) 103
BsrI ACTGG 2 cut(s) 93, 485
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 3 cut(s) 25, 117, 168
BssMI GATC 4 cut(s) 138, 239, 252, 397
BssNAI GTATAC 1 cut(s) 327
BssNI GRCGYC 1 cut(s) 165
Bst1107I GTATAC 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 594
Bst6I CTCTTC 1 cut(s) 512
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 4 cut(s) 261, 276, 494, 503
BstDEI CTNAG 1 cut(s) 510
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 2 cut(s) 21, 544
BstFNI CGCG 2 cut(s) 77, 170
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 4 cut(s) 141, 242, 255, 400
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 4 cut(s) 138, 239, 252, 397
BstSCI CCNGG 7 cut(s) 24, 25, 116, 117, 125, 291, 307
BstUI CGCG 2 cut(s) 77, 170
BstV1I GCAGC 3 cut(s) 87, 204, 283
BstV2I GAAGAC 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BstZ17I GTATAC 1 cut(s) 327
BsuI GTATCC 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 168
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 2 cut(s) 21, 544
Cac8I GCNNGC 4 cut(s) 261, 276, 494, 503
CfoI GCGC 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 29
Cfr42I CCGCGG 1 cut(s) 171
Cfr9I CCCGGG 2 cut(s) 25, 117
CseI GACGC 2 cut(s) 173, 563
Csp6I GTAC 2 cut(s) 265, 286
CviAII CATG 2 cut(s) 406, 558
CviQI GTAC 2 cut(s) 265, 286
DdeI CTNAG 1 cut(s) 510
DpnI GATC 4 cut(s) 140, 241, 254, 399
DpnII GATC 4 cut(s) 138, 239, 252, 397
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
EciI GGCGGA 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 536
Eco88I CYCGRG 3 cut(s) 25, 117, 230
EcoO109I RGGNCCY 1 cut(s) 29
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 2 cut(s) 409, 561
FaqI GGGAC 3 cut(s) 42, 100, 603
FatI CATG 2 cut(s) 405, 557
FauI CCCGC 2 cut(s) 47, 82
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 1 cut(s) 326
FokI GGATG 2 cut(s) 8, 551
FspBI CTAG 2 cut(s) 411, 567
GlaI GCGC 1 cut(s) 78
GsaI CCCAGC 1 cut(s) 224
HapII CCGG 7 cut(s) 26, 104, 118, 127, 237, 293, 308
HgaI GACGC 2 cut(s) 173, 563
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 2 cut(s) 409, 561
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 4 cut(s) 35, 233, 374, 487
HpaII CCGG 7 cut(s) 26, 104, 118, 127, 237, 293, 308
HphI GGTGA 3 cut(s) 43, 413, 488
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 3 cut(s) 373, 511, 598
Hpy188III TCNNGA 3 cut(s) 237, 350, 401
Hpy8I GTNNAC 1 cut(s) 327
Hpy99I CGWCG 2 cut(s) 157, 579
HpyAV CCTTC 2 cut(s) 190, 439
HpyCH4III ACNGT 1 cut(s) 594
HpyCH4IV ACGT 3 cut(s) 48, 297, 365
HpyCH4V TGCA 1 cut(s) 437
HpyF3I CTNAG 1 cut(s) 510
HpySE526I ACGT 3 cut(s) 48, 297, 365
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 2 cut(s) 409, 561
HspAI GCGC 1 cut(s) 77
KflI GGGWCCC 1 cut(s) 29
Kpn2I TCCGGA 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 397
KspI CCGCGG 1 cut(s) 171
Kzo9I GATC 4 cut(s) 138, 239, 252, 397
LmnI GCTCC 3 cut(s) 190, 199, 563
Lsp1109I GCAGC 3 cut(s) 87, 204, 283
MaeI CTAG 2 cut(s) 411, 567
MaeII ACGT 3 cut(s) 48, 297, 365
MaeIII GTNAC 2 cut(s) 49, 476
MalI GATC 4 cut(s) 140, 241, 254, 399
MbiI CCGCTC 1 cut(s) 193
MboI GATC 4 cut(s) 138, 239, 252, 397
MboII GAAGA 6 cut(s) 410, 453, 479, 496, 529, 534
MflI RGATCY 1 cut(s) 239
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 9 cut(s) 53, 181, 313, 346, 372, 375, 378, 451, 580
MroI TCCGGA 1 cut(s) 236
MspA1I CMGCKG 2 cut(s) 170, 274
MspI CCGG 7 cut(s) 26, 104, 118, 127, 237, 293, 308
MspR9I CCNGG 7 cut(s) 26, 27, 118, 119, 127, 293, 309
Mva1269I GAATGC 1 cut(s) 576
MvnI CGCG 2 cut(s) 77, 170
NciI CCSGG 7 cut(s) 26, 27, 118, 119, 127, 293, 309
NdeII GATC 4 cut(s) 138, 239, 252, 397
NlaIII CATG 2 cut(s) 409, 561
NlaIV GGNNCC 3 cut(s) 30, 31, 241
NmuCI GTSAC 2 cut(s) 49, 476
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PctI GAATGC 1 cut(s) 576
PfeI GAWTC 3 cut(s) 35, 374, 487
PflFI GACNNNGTC 1 cut(s) 367
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PpuMI RGGWCCY 1 cut(s) 29
Psp5II RGGWCCY 1 cut(s) 29
PspFI CCCAGC 1 cut(s) 220
PspN4I GGNNCC 3 cut(s) 30, 31, 241
PspPI GGNCC 1 cut(s) 29
PspPPI RGGWCCY 1 cut(s) 29
PsuI RGATCY 1 cut(s) 239
PsyI GACNNNGTC 1 cut(s) 367
PvuII CAGCTG 1 cut(s) 274
RsaI GTAC 2 cut(s) 266, 287
RsaNI GTAC 2 cut(s) 265, 286
SacII CCGCGG 1 cut(s) 171
Sau3AI GATC 4 cut(s) 138, 239, 252, 397
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 7 cut(s) 26, 27, 118, 119, 127, 293, 309
Sfr303I CCGCGG 1 cut(s) 171
SgrBI CCGCGG 1 cut(s) 171
SinI GGWCC 1 cut(s) 29
SmaI CCCGGG 2 cut(s) 27, 119
SspMI CTAG 2 cut(s) 411, 567
StyD4I CCNGG 7 cut(s) 24, 25, 116, 117, 125, 291, 307
TaaI ACNGT 1 cut(s) 594
TaiI ACGT 3 cut(s) 51, 300, 368
TaqI TCGA 3 cut(s) 137, 318, 377
TauI GCSGC 9 cut(s) 149, 152, 170, 173, 176, 179, 182, 185, 307
TfiI GAWTC 3 cut(s) 35, 374, 487
TseFI GTSAC 2 cut(s) 49, 476
TseI GCWGC 3 cut(s) 100, 217, 271
Tsp45I GTSAC 2 cut(s) 49, 476
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 2 cut(s) 263, 344
TspMI CCCGGG 2 cut(s) 25, 117
Tth111I GACNNNGTC 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 29
XmaI CCCGGG 2 cut(s) 25, 117
XmiI GTMKAC 1 cut(s) 326
XspI CTAG 2 cut(s) 411, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.