Rorug04G0122800

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012219
Physical Location & Seq
Reverse (-)
19448324 .. 19448987
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0122800.1

Sequence Viewer

Length: 597 bp
ATGGAACCACGAACTCTGCAACTGATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAACTTTGGTTCCACCGATTCTACTGTACAACTCTTTTGGCACAACAGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

198

Amino Acids

21.84

Weight (kDa)

7.76

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 38 - 99 1.8e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13830 AT4G13830 AT4G13830
fragaria_vesca FvH4_4g13370
malus_domestica MD04G1016600.v1.1
prunus_persica Prupe.1G163300_v2.0.a1 Prupe.1G163300_v2.0.a1 Prupe.1G204200_v2.0.a1
pyrus_communis pycom04g01270
rosa_chinensis RchiOBHm_Chr4g0413741
rosa_laevigata RLG00000008197
rosa_multiflora Rmu_co8100182.1_g000001
rosa_roxburghii Rroxscaffold_5G00357660
rosa_rugosa Rorug04G0122800
rosa_samantha Rh4AG182200 Rh4BG181300 Rh4CG193400 Rh4DG177800
rosa_wichuraiana Rw4G015250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 437
AfaI GTAC 2 cut(s) 352, 528
AfiI CCNNNNNNNGG 2 cut(s) 353, 437
AflIII ACRYGT 1 cut(s) 238
AhlI ACTAGT 2 cut(s) 338, 467
AjnI CCWGG 3 cut(s) 116, 346, 586
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AloI GAACNNNNNNTCC 2 cut(s) 328, 360
AluBI AGCT 3 cut(s) 31, 223, 434
AluI AGCT 3 cut(s) 31, 223, 434
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 285
AoxI GGCC 1 cut(s) 428
ApeKI GCWGC 2 cut(s) 74, 317
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 440, 472
AseI ATTAAT 1 cut(s) 495
Asp700I GAANNNNTTC 1 cut(s) 340
AspS9I GGNCC 3 cut(s) 381, 428, 462
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 576
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 2 cut(s) 381, 462
BaeGI GKGCMC 2 cut(s) 188, 330
BamHI GGATCC 4 cut(s) 147, 359, 407, 440
BanII GRGCYC 1 cut(s) 286
BauI CACGAG 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 86, 304
BccI CCATC 4 cut(s) 19, 50, 419, 476
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 3 cut(s) 118, 348, 588
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 221
BcuI ACTAGT 2 cut(s) 338, 467
BfaI CTAG 2 cut(s) 339, 468
BfmI CTRYAG 1 cut(s) 192
BglII AGATCT 1 cut(s) 210
BisI GCNGC 2 cut(s) 75, 318
BlsI GCNGC 2 cut(s) 76, 319
Bme1390I CCNGG 4 cut(s) 79, 118, 348, 588
Bme18I GGWCC 2 cut(s) 381, 462
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 3 cut(s) 381, 428, 462
BmrFI CCNGG 4 cut(s) 79, 118, 348, 588
BpmI CTGGAG 2 cut(s) 117, 203
BpuEI CTTGAG 2 cut(s) 137, 306
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 437
Bse1I ACTGG 4 cut(s) 229, 358, 391, 400
BseBI CCWGG 3 cut(s) 118, 348, 588
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 2 cut(s) 61, 558
BseLI CCNNNNNNNGG 2 cut(s) 353, 437
BseNI ACTGG 4 cut(s) 229, 358, 391, 400
BseRI GAGGAG 2 cut(s) 589, 592
BseSI GKGCMC 2 cut(s) 188, 330
BseXI GCAGC 2 cut(s) 86, 304
BseYI CCCAGC 1 cut(s) 39
BshFI GGCC 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 353, 437
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 4 cut(s) 188, 201, 286, 330
Bsp1407I TGTACA 1 cut(s) 526
Bsp19I CCATGG 1 cut(s) 330
BspANI GGCC 1 cut(s) 430
BsrGI TGTACA 1 cut(s) 526
BsrI ACTGG 4 cut(s) 229, 358, 391, 400
BssECI CCNNGG 1 cut(s) 330
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 3 cut(s) 118, 348, 588
Bst4CI ACNGT 1 cut(s) 526
Bst6I CTCTTC 1 cut(s) 296
BstAUI TGTACA 1 cut(s) 526
BstC8I GCNNGC 1 cut(s) 432
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 2 cut(s) 61, 558
BstMAI GTCTC 1 cut(s) 221
BstNI CCWGG 3 cut(s) 118, 348, 588
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 4 cut(s) 77, 116, 346, 586
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 2 cut(s) 188, 330
BstV1I GCAGC 2 cut(s) 86, 304
BstX2I RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
BstYI RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
BsuRI GGCC 1 cut(s) 430
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 2 cut(s) 61, 558
BtsIMutI CAGTG 1 cut(s) 384
Cac8I GCNNGC 1 cut(s) 432
Cfr13I GGNCC 3 cut(s) 381, 428, 462
Csp6I GTAC 2 cut(s) 351, 527
CviAII CATG 2 cut(s) 239, 331
CviJI RGCY 8 cut(s) 31, 77, 111, 223, 284, 317, 430, 434
CviKI_1 RGCY 8 cut(s) 31, 77, 111, 223, 284, 317, 430, 434
CviQI GTAC 2 cut(s) 351, 527
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 2 cut(s) 381, 462
Eco88I CYCGRG 1 cut(s) 285
EcoRII CCWGG 3 cut(s) 116, 346, 586
EcoT14I CCWWGG 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 2 cut(s) 242, 334
FaiI YATR 3 cut(s) 234, 240, 332
FatI CATG 2 cut(s) 238, 330
Fnu4HI GCNGC 2 cut(s) 75, 318
FokI GGATG 2 cut(s) 68, 545
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 2 cut(s) 75, 318
FspBI CTAG 2 cut(s) 339, 468
GluI GCNGC 2 cut(s) 75, 318
GsaI CCCAGC 1 cut(s) 43
GsuI CTGGAG 2 cut(s) 117, 203
HaeIII GGCC 1 cut(s) 430
HapII CCGG 1 cut(s) 78
Hin1II CATG 2 cut(s) 242, 334
HinfI GANTC 1 cut(s) 518
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 576
Hpy166II GTNNAC 2 cut(s) 384, 465
Hpy188III TCNNGA 4 cut(s) 134, 206, 271, 287
Hpy8I GTNNAC 2 cut(s) 384, 465
HpyCH4III ACNGT 1 cut(s) 526
HpyCH4V TGCA 3 cut(s) 19, 309, 566
Hsp92II CATG 2 cut(s) 242, 334
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 2 cut(s) 86, 304
MaeI CTAG 2 cut(s) 339, 468
MboII GAAGA 1 cut(s) 313
MflI RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
MhlI GDGCHC 4 cut(s) 188, 201, 286, 330
MluCI AATT 3 cut(s) 373, 421, 454
MnlI CCTC 8 cut(s) 46, 53, 161, 238, 297, 543, 567, 570
MroXI GAANNNNTTC 1 cut(s) 340
MseI TTAA 2 cut(s) 180, 495
MspA1I CMGCKG 2 cut(s) 223, 434
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 4 cut(s) 79, 118, 348, 588
MvaI CCWGG 3 cut(s) 118, 348, 588
NciI CCSGG 1 cut(s) 79
NcoI CCATGG 1 cut(s) 330
NlaIII CATG 2 cut(s) 242, 334
NspI RCATGY 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 285
PciI ACATGT 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 340
PfeI GAWTC 1 cut(s) 518
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 2 cut(s) 76, 319
PscI ACATGT 1 cut(s) 238
PshBI ATTAAT 1 cut(s) 495
Psp6I CCWGG 3 cut(s) 116, 346, 586
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 3 cut(s) 116, 346, 586
PspPI GGNCC 3 cut(s) 381, 428, 462
PsuI RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
PvuII CAGCTG 2 cut(s) 223, 434
RsaI GTAC 2 cut(s) 352, 528
RsaNI GTAC 2 cut(s) 351, 527
SaqAI TTAA 2 cut(s) 180, 495
SatI GCNGC 2 cut(s) 75, 318
Sau96I GGNCC 3 cut(s) 381, 428, 462
ScrFI CCNGG 4 cut(s) 79, 118, 348, 588
SduI GDGCHC 4 cut(s) 188, 201, 286, 330
SetI ASST 5 cut(s) 33, 122, 225, 308, 436
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 285
SinI GGWCC 2 cut(s) 381, 462
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 3 cut(s) 152, 285, 321
SmoI CTYRAG 3 cut(s) 152, 285, 321
SpeI ACTAGT 2 cut(s) 338, 467
Sse9I AATT 3 cut(s) 373, 421, 454
SspMI CTAG 2 cut(s) 339, 468
StyD4I CCNGG 4 cut(s) 77, 116, 346, 586
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 526
TaqI TCGA 3 cut(s) 51, 286, 414
TasI AATT 3 cut(s) 373, 421, 454
TatI WGTACW 1 cut(s) 526
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 2 cut(s) 180, 495
Tru9I TTAA 2 cut(s) 180, 495
TscAI CASTG 1 cut(s) 391
TseI GCWGC 2 cut(s) 74, 317
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 381, 462
VspI ATTAAT 1 cut(s) 495
XceI RCATGY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 340
XspI CTAG 2 cut(s) 339, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.