Prupe.1G163300_v2.0.a1

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012219
Physical Location & Seq
Forward (+)
13125665 .. 13127410
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G163300.1

Sequence Viewer

Length: 624 bp
ATGCGAAGCTATGGATTAGCAATCTCAGGAAGCGATTCCTGCTTCTACATCCCCACAACCCACACAGCCATCTCCACCAGAAGACCCATACCCGACCGGAAACCCAACTTCCTCTTCGCAAAACCCGATTTTTCGTTCCGGAGCGGATTTGGGTCGCTCAGACTCGAAGCCAAGGCCGCAATCAACGATGGGGTCATGGTGGCCGAGCACAAGGAACTCACTTTCTACGAGCTTCTGGGCATACCCGAATCCGGATCCGTGACCCAAATCAAGCAGGCGTACAAGCTGCTGGCCCGGAAGTACCACCCGGACGTATCGCCTCCGGACCGGGTCGAGGAGAATACGGAGAAGTTTATTCGGGTTCAGGAGGCTTATGAGACCTTGTCTGATTCGAGAAGGAGAGCTATGTATGATCGAGACATGGCCAGAGGTCTTCACCTTGCTTTCTCTGCAAGGAGATGCCAATATGATGAGGGAATGGAGGAAAAAGGCGACTGGAAGAATCGATGGCAAAGTCAGCTATCTGGGTTGAAGAGAAGAAGCATGAACAAGAATGCTAGAGAACATATGTCATGGGGAGCTCGAATGCGCCGGCAAAGGGAAGGATCATCCGAAAAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

208

Amino Acids

23.99

Weight (kDa)

9.72

Isoelectric Point (pI)

61.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13830 AT4G13830 AT4G13830
fragaria_vesca FvH4_4g13370
malus_domestica MD04G1016600.v1.1
prunus_persica Prupe.1G163300_v2.0.a1 Prupe.1G163300_v2.0.a1 Prupe.1G204200_v2.0.a1
pyrus_communis pycom04g01270
rosa_chinensis RchiOBHm_Chr4g0413741
rosa_laevigata RLG00000008197
rosa_multiflora Rmu_co8100182.1_g000001
rosa_roxburghii Rroxscaffold_5G00357660
rosa_rugosa Rorug04G0122800
rosa_samantha Rh4AG182200 Rh4BG181300 Rh4CG193400 Rh4DG177800
rosa_wichuraiana Rw4G015250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 144
AccIII TCCGGA 3 cut(s) 138, 251, 322
AciI CCGC 2 cut(s) 144, 177
AclWI GGATC 3 cut(s) 249, 262, 613
AcoI YGGCCR 2 cut(s) 201, 423
AfaI GTAC 2 cut(s) 281, 302
AfiI CCNNNNNNNGG 3 cut(s) 251, 334, 598
AgsI TTSAA 1 cut(s) 532
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 6 cut(s) 9, 232, 286, 404, 520, 581
AluI AGCT 6 cut(s) 9, 232, 286, 404, 520, 581
Alw21I GWGCWC 2 cut(s) 210, 583
Alw26I GTCTC 2 cut(s) 371, 411
AlwI GGATC 3 cut(s) 249, 262, 613
Aor13HI TCCGGA 3 cut(s) 138, 251, 322
AoxI GGCC 4 cut(s) 174, 201, 291, 423
ApeKI GCWGC 1 cut(s) 286
Asp700I GAANNNNTTC 1 cut(s) 34
AspLEI GCGC 1 cut(s) 591
AspS9I GGNCC 2 cut(s) 292, 325
AsuC2I CCSGG 3 cut(s) 295, 308, 329
AsuHPI GGTGA 1 cut(s) 428
AvaII GGWCC 1 cut(s) 325
BalI TGGCCA 1 cut(s) 425
BamHI GGATCC 1 cut(s) 254
BanII GRGCYC 1 cut(s) 583
BbsI GAAGAC 2 cut(s) 88, 425
Bbv12I GWGCWC 2 cut(s) 210, 583
BbvI GCAGC 1 cut(s) 273
BccI CCATC 3 cut(s) 77, 182, 501
BcnI CCSGG 3 cut(s) 295, 308, 329
BcoDI GTCTC 2 cut(s) 371, 411
BfaI CTAG 1 cut(s) 558
BisI GCNGC 2 cut(s) 177, 287
BlsI GCNGC 2 cut(s) 178, 288
Bme1390I CCNGG 3 cut(s) 295, 308, 329
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 2 cut(s) 292, 325
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 3 cut(s) 295, 308, 329
BmsI GCATC 1 cut(s) 449
BpiI GAAGAC 2 cut(s) 88, 425
BpuMI CCSGG 3 cut(s) 295, 308, 329
Bsa29I ATCGAT 1 cut(s) 505
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 4 cut(s) 96, 138, 251, 322
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 334, 598
Bse118I RCCGGY 1 cut(s) 591
Bse1I ACTGG 1 cut(s) 500
BseAI TCCGGA 3 cut(s) 138, 251, 322
BseCI ATCGAT 1 cut(s) 505
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 2 cut(s) 48, 608
BseLI CCNNNNNNNGG 3 cut(s) 251, 334, 598
BseMII CTCAG 2 cut(s) 39, 172
BseNI ACTGG 1 cut(s) 500
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 4 cut(s) 176, 203, 293, 425
BshVI ATCGAT 1 cut(s) 505
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 2 cut(s) 210, 583
BsiSI CCGG 8 cut(s) 97, 139, 252, 295, 308, 323, 328, 592
BslI CCNNNNNNNGG 3 cut(s) 251, 334, 598
BsmAI GTCTC 2 cut(s) 371, 411
BsmI GAATGC 2 cut(s) 559, 591
BsnI GGCC 4 cut(s) 176, 203, 293, 425
Bso31I GGTCTC 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 210, 583
Bsp13I TCCGGA 3 cut(s) 138, 251, 322
Bsp143I GATC 3 cut(s) 254, 412, 605
BspACI CCGC 2 cut(s) 144, 177
BspANI GGCC 4 cut(s) 176, 203, 293, 425
BspCNI CTCAG 2 cut(s) 38, 171
BspDI ATCGAT 1 cut(s) 505
BspEI TCCGGA 3 cut(s) 138, 251, 322
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 3 cut(s) 249, 262, 613
BspTNI GGTCTC 1 cut(s) 371
BsrBI CCGCTC 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 591
BsrI ACTGG 1 cut(s) 500
BssAI RCCGGY 1 cut(s) 591
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 3 cut(s) 254, 412, 605
BssT1I CCWWGG 1 cut(s) 171
Bst6I CTCTTC 2 cut(s) 119, 527
BstC8I GCNNGC 3 cut(s) 276, 291, 593
BstDEI CTNAG 2 cut(s) 25, 158
BstF5I GGATG 2 cut(s) 48, 608
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 3 cut(s) 257, 415, 608
BstMAI GTCTC 2 cut(s) 371, 411
BstMBI GATC 3 cut(s) 254, 412, 605
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 4 cut(s) 39, 176, 449, 517
BstSCI CCNGG 3 cut(s) 293, 306, 327
BstV1I GCAGC 1 cut(s) 273
BstV2I GAAGAC 2 cut(s) 88, 425
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
Bsu15I ATCGAT 1 cut(s) 505
BsuRI GGCC 4 cut(s) 176, 203, 293, 425
BsuTUI ATCGAT 1 cut(s) 505
BtsCI GGATG 2 cut(s) 48, 608
Cac8I GCNNGC 3 cut(s) 276, 291, 593
CfoI GCGC 1 cut(s) 591
Cfr10I RCCGGY 1 cut(s) 591
Cfr13I GGNCC 2 cut(s) 292, 325
ClaI ATCGAT 1 cut(s) 505
CpoI CGGWCCG 1 cut(s) 325
Csp6I GTAC 2 cut(s) 280, 301
CspI CGGWCCG 1 cut(s) 325
CviAII CATG 4 cut(s) 196, 421, 544, 573
CviQI GTAC 2 cut(s) 280, 301
DdeI CTNAG 2 cut(s) 25, 158
DpnI GATC 3 cut(s) 256, 414, 607
DpnII GATC 3 cut(s) 254, 412, 605
EaeI YGGCCR 2 cut(s) 201, 423
Eam1104I CTCTTC 2 cut(s) 119, 527
EarI CTCTTC 2 cut(s) 119, 527
Ecl136II GAGCTC 1 cut(s) 581
Eco130I CCWWGG 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 583
Eco31I GGTCTC 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 581
EcoICRI GAGCTC 1 cut(s) 581
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 583
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 4 cut(s) 199, 424, 547, 576
FatI CATG 4 cut(s) 195, 420, 543, 572
FauNDI CATATG 1 cut(s) 567
Fnu4HI GCNGC 2 cut(s) 177, 287
FokI GGATG 2 cut(s) 35, 595
FriOI GRGCYC 1 cut(s) 583
Fsp4HI GCNGC 2 cut(s) 177, 287
FspBI CTAG 1 cut(s) 558
GlaI GCGC 1 cut(s) 590
GluI GCNGC 2 cut(s) 177, 287
HaeIII GGCC 4 cut(s) 176, 203, 293, 425
HapII CCGG 8 cut(s) 97, 139, 252, 295, 308, 323, 328, 592
HhaI GCGC 1 cut(s) 591
Hin1II CATG 4 cut(s) 199, 424, 547, 576
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HinfI GANTC 5 cut(s) 35, 162, 248, 389, 502
HpaII CCGG 8 cut(s) 97, 139, 252, 295, 308, 323, 328, 592
HphI GGTGA 1 cut(s) 428
Hpy188I TCNGA 3 cut(s) 161, 388, 613
Hpy188III TCNNGA 7 cut(s) 27, 139, 252, 323, 365, 393, 416
HpyAV CCTTC 2 cut(s) 390, 596
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 1 cut(s) 452
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 176, 449, 517
HpyF3I CTNAG 2 cut(s) 25, 158
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 4 cut(s) 199, 424, 547, 576
HspAI GCGC 1 cut(s) 589
Kpn2I TCCGGA 3 cut(s) 138, 251, 322
KroI GCCGGC 1 cut(s) 591
KroNI GCCGGC 1 cut(s) 593
Kzo9I GATC 3 cut(s) 254, 412, 605
LmnI GCTCC 2 cut(s) 141, 578
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 449
MaeI CTAG 1 cut(s) 558
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 259
MalI GATC 3 cut(s) 256, 414, 607
MbiI CCGCTC 1 cut(s) 144
MboI GATC 3 cut(s) 254, 412, 605
MboII GAAGA 6 cut(s) 93, 106, 425, 511, 544, 549
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 2 cut(s) 210, 583
MlsI TGGCCA 1 cut(s) 425
MluNI TGGCCA 1 cut(s) 425
MlyI GAGTC 1 cut(s) 156
MnlI CCTC 7 cut(s) 122, 328, 330, 361, 422, 466, 475
Mox20I TGGCCA 1 cut(s) 425
MroI TCCGGA 3 cut(s) 138, 251, 322
MroNI GCCGGC 1 cut(s) 591
MroXI GAANNNNTTC 1 cut(s) 34
MscI TGGCCA 1 cut(s) 425
Msp20I TGGCCA 1 cut(s) 425
MspI CCGG 8 cut(s) 97, 139, 252, 295, 308, 323, 328, 592
MspR9I CCNGG 3 cut(s) 295, 308, 329
Mva1269I GAATGC 2 cut(s) 559, 591
MwoI GCNNNNNNNGC 4 cut(s) 39, 176, 449, 517
NaeI GCCGGC 1 cut(s) 593
NciI CCSGG 3 cut(s) 295, 308, 329
NdeI CATATG 1 cut(s) 567
NdeII GATC 3 cut(s) 254, 412, 605
NgoMIV GCCGGC 1 cut(s) 591
NlaIII CATG 4 cut(s) 199, 424, 547, 576
NlaIV GGNNCC 1 cut(s) 256
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PctI GAATGC 2 cut(s) 559, 591
PdiI GCCGGC 1 cut(s) 593
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 4 cut(s) 35, 248, 389, 502
PflFI GACNNNGTC 2 cut(s) 329, 382
PkrI GCNGC 2 cut(s) 178, 288
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 583
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 2 cut(s) 292, 325
PsuI RGATCY 1 cut(s) 254
PsyI GACNNNGTC 2 cut(s) 329, 382
RsaI GTAC 2 cut(s) 281, 302
RsaNI GTAC 2 cut(s) 280, 301
Rsr2I CGGWCCG 1 cut(s) 325
RsrII CGGWCCG 1 cut(s) 325
SacI GAGCTC 1 cut(s) 583
SatI GCNGC 2 cut(s) 177, 287
Sau3AI GATC 3 cut(s) 254, 412, 605
Sau96I GGNCC 2 cut(s) 292, 325
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 3 cut(s) 295, 308, 329
SduI GDGCHC 2 cut(s) 210, 583
SfaNI GCATC 1 cut(s) 449
SinI GGWCC 1 cut(s) 325
SsiI CCGC 2 cut(s) 144, 177
SspMI CTAG 1 cut(s) 558
SstI GAGCTC 1 cut(s) 583
StyD4I CCNGG 3 cut(s) 293, 306, 327
StyI CCWWGG 1 cut(s) 171
TaiI ACGT 1 cut(s) 315
TaqI TCGA 6 cut(s) 165, 333, 392, 415, 505, 583
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 4 cut(s) 35, 248, 389, 502
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 560
TspGWI ACGGA 2 cut(s) 247, 359
Tth111I GACNNNGTC 2 cut(s) 329, 382
VpaK11BI GGWCC 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 34
XspI CTAG 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.