Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012219

Physical Location & Seq

Genomic Coordinates Forward (+)

20394415 .. 20395220

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G204200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCGAAGCTATGGATTAGCAATCTCAGGAAGCGATTCCTGCTTCTACATCCCCACAACCCACAAACCAATTTCATTTTCAATATTAAGATTATTGGCATGCTTCCACGAGTTCTCCCTCGACCTGTCCATCTTGCTGCAGCAGATCCACGGGAGCAAGATGTGGCGACGTAGAGGAGGTCGTTCCTCTGCTCCAAAACCAGTGCTCGCGGAGCACAACGAAATCGTTCATGGATCCCCTAGACGACGATCTCAGGCGCGAGGTCCGCTCAGCCGCAGGTCAGCCGCGGGTCCACCATCCTCGCCGCCTCAGCTCCATGGCGACGGGGAAACCCCATGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004497 GO:0004499 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005789 GO:0005829 GO:0006457 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0031984 GO:0034975 GO:0036094 GO:0042175 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050660 GO:0050661 GO:0050662 GO:0055114 GO:0097159 GO:0098827 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like NAD_binding_8

Protein Analysis

115

Amino Acids

12.52

Weight (kDa)

10.48

Isoelectric Point (pI)

99.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13830 AT4G13830 AT4G13830
fragaria_vesca	FvH4_4g13370
malus_domestica	MD04G1016600.v1.1
prunus_persica	Prupe.1G163300_v2.0.a1 Prupe.1G163300_v2.0.a1 Prupe.1G204200_v2.0.a1
pyrus_communis	pycom04g01270
rosa_chinensis	RchiOBHm_Chr4g0413741
rosa_laevigata	RLG00000008197
rosa_multiflora	Rmu_co8100182.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357660
rosa_rugosa	Rorug04G0122800
rosa_samantha	Rh4AG182200 Rh4BG181300 Rh4CG193400 Rh4DG177800
rosa_wichuraiana	Rw4G015250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	267
AccBSI	CCGCTC	1 cut(s)	268
AccII	CGCG	3 cut(s)	209, 259, 287
AciI	CCGC	6 cut(s)	209, 266, 274, 285, 287, 305
AclWI	GGATC	3 cut(s)	139, 228, 241
AfaI	GTAC	1 cut(s)	340
AgsI	TTSAA	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AluBI	AGCT	2 cut(s)	9, 313
AluI	AGCT	2 cut(s)	9, 313
Alw21I	GWGCWC	2 cut(s)	207, 216
AlwI	GGATC	3 cut(s)	139, 228, 241
ApeKI	GCWGC	2 cut(s)	136, 139
Asp700I	GAANNNNTTC	2 cut(s)	34, 225
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	263, 290
AvaII	GGWCC	2 cut(s)	263, 290
BamHI	GGATCC	1 cut(s)	233
BauI	CACGAG	1 cut(s)	107
Bbv12I	GWGCWC	2 cut(s)	207, 216
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	123, 151
BccI	CCATC	2 cut(s)	137, 304
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	267
BisI	GCNGC	5 cut(s)	137, 140, 274, 285, 305
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	5 cut(s)	138, 141, 275, 286, 306
Bme18I	GGWCC	2 cut(s)	263, 290
BmgT120I	GGNCC	2 cut(s)	263, 290
BmiI	GGNNCC	2 cut(s)	235, 291
BplI	GAGNNNNNCTC	2 cut(s)	252, 284
Bpu10I	CCTNAGC	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	148, 285, 316
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bse1I	ACTGG	1 cut(s)	200
BseDI	CCNNGG	3 cut(s)	148, 285, 316
BseGI	GGATG	2 cut(s)	48, 296
BseMII	CTCAG	4 cut(s)	39, 266, 283, 323
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	2 cut(s)	123, 151
Bsh1236I	CGCG	3 cut(s)	209, 259, 287
BsiHKAI	GWGCWC	2 cut(s)	207, 216
Bsp1286I	GDGCHC	2 cut(s)	207, 216
Bsp143I	GATC	3 cut(s)	144, 233, 248
Bsp1720I	GCTNAGC	1 cut(s)	269
Bsp19I	CCATGG	1 cut(s)	316
BspACI	CCGC	6 cut(s)	209, 266, 274, 285, 287, 305
BspCNI	CTCAG	4 cut(s)	38, 265, 282, 322
BspFNI	CGCG	3 cut(s)	209, 259, 287
BspLI	GGNNCC	2 cut(s)	235, 291
BspMAI	CTGCAG	1 cut(s)	141
BspMI	ACCTGC	1 cut(s)	267
BspPI	GGATC	3 cut(s)	139, 228, 241
BsrBI	CCGCTC	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	148, 285, 316
BssMI	GATC	3 cut(s)	144, 233, 248
BssSI	CACGAG	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	316
Bst2BI	CACGAG	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	100, 207
BstDEI	CTNAG	5 cut(s)	25, 252, 269, 309, 342
BstDSI	CCRYGG	3 cut(s)	148, 285, 316
BstF5I	GGATG	2 cut(s)	48, 296
BstFNI	CGCG	3 cut(s)	209, 259, 287
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	3 cut(s)	147, 236, 251
BstMBI	GATC	3 cut(s)	144, 233, 248
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 211, 265, 310
BstNSI	RCATGY	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	137
BstUI	CGCG	3 cut(s)	209, 259, 287
BstV1I	GCAGC	2 cut(s)	123, 151
BstX2I	RGATCY	2 cut(s)	144, 233
BstYI	RGATCY	2 cut(s)	144, 233
BtgI	CCRYGG	3 cut(s)	148, 285, 316
BtsCI	GGATG	2 cut(s)	48, 296
BtsIMutI	CAGTG	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	100, 207
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	263, 290
Cfr42I	CCGCGG	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	4 cut(s)	99, 230, 317, 336
CviJI	RGCY	4 cut(s)	9, 273, 284, 313
CviKI_1	RGCY	4 cut(s)	9, 273, 284, 313
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	5 cut(s)	25, 252, 269, 309, 342
DpnI	GATC	3 cut(s)	146, 235, 250
DpnII	GATC	3 cut(s)	144, 233, 248
Eco130I	CCWWGG	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	263, 290
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	4 cut(s)	102, 233, 320, 339
FaiI	YATR	5 cut(s)	12, 100, 231, 318, 337
FatI	CATG	4 cut(s)	98, 229, 316, 335
FauI	CCCGC	1 cut(s)	280
Fnu4HI	GCNGC	5 cut(s)	137, 140, 274, 285, 305
FokI	GGATG	2 cut(s)	35, 283
Fsp4HI	GCNGC	5 cut(s)	137, 140, 274, 285, 305
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	5 cut(s)	137, 140, 274, 285, 305
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	4 cut(s)	102, 233, 320, 339
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HinfI	GANTC	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188III	TCNNGA	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	293
Hpy99I	CGWCG	3 cut(s)	171, 249, 326
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 211, 265, 310
HpyF3I	CTNAG	5 cut(s)	25, 252, 269, 309, 342
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	4 cut(s)	102, 233, 320, 339
HspAI	GCGC	1 cut(s)	257
KspI	CCGCGG	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	144, 233, 248
LmnI	GCTCC	4 cut(s)	153, 196, 211, 318
LpnPI	CCDG	6 cut(s)	12, 52, 137, 213, 239, 262
Lsp1109I	GCAGC	2 cut(s)	123, 151
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	169
MalI	GATC	3 cut(s)	146, 235, 250
MbiI	CCGCTC	1 cut(s)	268
MboI	GATC	3 cut(s)	144, 233, 248
MflI	RGATCY	2 cut(s)	144, 233
MhlI	GDGCHC	2 cut(s)	207, 216
MluCI	AATT	1 cut(s)	69
MnlI	CCTC	7 cut(s)	128, 167, 170, 196, 254, 310, 318
MroXI	GAANNNNTTC	2 cut(s)	34, 225
MseI	TTAA	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	287
MvnI	CGCG	3 cut(s)	209, 259, 287
MwoI	GCNNNNNNNGC	4 cut(s)	39, 211, 265, 310
NcoI	CCATGG	1 cut(s)	316
NdeII	GATC	3 cut(s)	144, 233, 248
NlaIII	CATG	4 cut(s)	102, 233, 320, 339
NlaIV	GGNNCC	2 cut(s)	235, 291
NspI	RCATGY	1 cut(s)	102
PaeI	GCATGC	1 cut(s)	102
PdmI	GAANNNNTTC	2 cut(s)	34, 225
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	5 cut(s)	138, 141, 275, 286, 306
PspN4I	GGNNCC	2 cut(s)	235, 291
PspPI	GGNCC	2 cut(s)	263, 290
PstI	CTGCAG	1 cut(s)	141
PsuI	RGATCY	2 cut(s)	144, 233
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SacII	CCGCGG	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	5 cut(s)	137, 140, 274, 285, 305
Sau3AI	GATC	3 cut(s)	144, 233, 248
Sau96I	GGNCC	2 cut(s)	263, 290
SduI	GDGCHC	2 cut(s)	207, 216
SetI	ASST	7 cut(s)	11, 126, 172, 181, 265, 281, 315
SfcI	CTRYAG	1 cut(s)	137
Sfr303I	CCGCGG	1 cut(s)	288
SgrBI	CCGCGG	1 cut(s)	288
SinI	GGWCC	2 cut(s)	263, 290
SphI	GCATGC	1 cut(s)	102
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	6 cut(s)	209, 266, 274, 285, 287, 305
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	316
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	69
TatI	WGTACW	1 cut(s)	338
TauI	GCSGC	3 cut(s)	276, 287, 307
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	207
TseI	GCWGC	2 cut(s)	136, 139
TspDTI	ATGAA	2 cut(s)	63, 218
TspRI	CASTG	1 cut(s)	207
VpaK11BI	GGWCC	2 cut(s)	263, 290
XceI	RCATGY	1 cut(s)	102
XmnI	GAANNNNTTC	2 cut(s)	34, 225
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.