FvH4_4g13370

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012219
Physical Location & Seq
Reverse (-)
16981703 .. 16983622
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13370.t1

Sequence Viewer

Length: 597 bp
ATGCAAACCTATGGCCTGACCATCCCGGGAGCCGATTCCCGCCTCTACATCACCCCCATCTCCGCCGCCCGACCCGCACCCGACCCGAAACCCAGTTCTCTCCCTGTGTTCTCGTCCCGGACCCGGTTCGGCTCCATTAAGGCCAAGGCGGCCACGATGAACGGTGCGGTGACGGCGGAGGAGAAGGAGCTGTCGTTTTACGAGCTGCTGGGGATACCCGAGTCCGGATCGATAAAGGAGATAAAGCAGGCGTATAAACAGCTGGCGAGGAAGTACCACCCTGACGTGTCGCCGCCGGGTCGGGTCGAGGAGTATACCGAGAAGTTTATTCGGGTTCAGGAGGCGTATGAGACTTTGTCGGACTCGAGGAGGAGGGCTCTGTACGATCAGGACATGGCTAGGGGTCTTCACCTTGCTTTCTCTGCAAGGAGATATCAATATGATGAGGGCATGGAAGTAAAAGGTGACTGGAAGAATCGCTGGCAAAGCCAGCTGTCTGAGCTGAAGAGAAGAAGCTCATACAAGGATGATCGACAAAACATGTCATGGGGAGCTAGAATGCGCAGGCAAAGAGAGGGACTGGCTGATGAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

199

Amino Acids

22.75

Weight (kDa)

9.52

Isoelectric Point (pI)

60.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 66 - 129 5.8e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13830 AT4G13830 AT4G13830
fragaria_vesca FvH4_4g13370
malus_domestica MD04G1016600.v1.1
prunus_persica Prupe.1G163300_v2.0.a1 Prupe.1G163300_v2.0.a1 Prupe.1G204200_v2.0.a1
pyrus_communis pycom04g01270
rosa_chinensis RchiOBHm_Chr4g0413741
rosa_laevigata RLG00000008197
rosa_multiflora Rmu_co8100182.1_g000001
rosa_roxburghii Rroxscaffold_5G00357660
rosa_rugosa Rorug04G0122800
rosa_samantha Rh4AG182200 Rh4BG181300 Rh4CG193400 Rh4DG177800
rosa_wichuraiana Rw4G015250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 563
AccI GTMKAC 1 cut(s) 314
AccIII TCCGGA 1 cut(s) 224
AciI CCGC 8 cut(s) 40, 63, 66, 75, 149, 167, 176, 293
AclWI GGATC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 150
AcuI CTGAAG 1 cut(s) 524
AfaI GTAC 2 cut(s) 275, 383
AfiI CCNNNNNNNGG 2 cut(s) 123, 224
AflIII ACRYGT 2 cut(s) 285, 540
AjiI CACGTC 1 cut(s) 286
AluBI AGCT 7 cut(s) 190, 205, 262, 493, 502, 516, 554
AluI AGCT 7 cut(s) 190, 205, 262, 493, 502, 516, 554
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 1 cut(s) 235
Ama87I CYCGRG 3 cut(s) 25, 218, 364
Aor13HI TCCGGA 1 cut(s) 224
AoxI GGCC 3 cut(s) 13, 141, 150
ApeKI GCWGC 1 cut(s) 205
AspLEI GCGC 1 cut(s) 564
AspS9I GGNCC 1 cut(s) 120
AsuC2I CCSGG 5 cut(s) 26, 27, 118, 124, 297
AsuHPI GGTGA 4 cut(s) 43, 181, 401, 476
AvaI CYCGRG 3 cut(s) 25, 218, 364
AvaII GGWCC 1 cut(s) 120
BaeI ACNNNNGTAYC 2 cut(s) 206, 239
BanII GRGCYC 1 cut(s) 379
BbsI GAAGAC 1 cut(s) 398
BbvI GCAGC 1 cut(s) 192
BccI CCATC 2 cut(s) 29, 65
BceAI ACGGC 1 cut(s) 189
BciVI GTATCC 1 cut(s) 207
BcnI CCSGG 5 cut(s) 26, 27, 118, 124, 297
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 2 cut(s) 399, 555
BfuI GTATCC 1 cut(s) 207
BglI GCCNNNNNGGC 1 cut(s) 149
BisI GCNGC 4 cut(s) 66, 150, 206, 293
BlsI GCNGC 4 cut(s) 67, 151, 207, 294
Bme1390I CCNGG 5 cut(s) 26, 27, 118, 124, 297
Bme18I GGWCC 1 cut(s) 120
BmeT110I CYCGRG 3 cut(s) 25, 218, 364
BmgBI CACGTC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 3 cut(s) 31, 122, 133
BmrFI CCNGG 5 cut(s) 26, 27, 118, 124, 297
BmrI ACTGGG 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 398
BplI GAGNNNNNCTC 2 cut(s) 361, 393
BpuMI CCSGG 5 cut(s) 26, 27, 118, 124, 297
Bsa29I ATCGAT 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 25, 144
BsaWI WCCGGW 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 224
Bse1I ACTGG 3 cut(s) 93, 473, 585
BseAI TCCGGA 1 cut(s) 224
BseCI ATCGAT 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 25, 144
BseGI GGATG 2 cut(s) 21, 532
BseLI CCNNNNNNNGG 2 cut(s) 123, 224
BseMII CTCAG 1 cut(s) 489
BseNI ACTGG 3 cut(s) 93, 473, 585
BseRI GAGGAG 4 cut(s) 194, 323, 382, 385
BseXI GCAGC 1 cut(s) 192
BseYI CCCAGC 1 cut(s) 208
BshFI GGCC 3 cut(s) 15, 143, 152
BshVI ATCGAT 1 cut(s) 230
BsiHKCI CYCGRG 3 cut(s) 25, 218, 364
BsiSI CCGG 5 cut(s) 26, 118, 124, 225, 296
BslFI GGGAC 2 cut(s) 100, 591
BslI CCNNNNNNNGG 2 cut(s) 123, 224
BsmAI GTCTC 1 cut(s) 344
BsmFI GGGAC 2 cut(s) 100, 591
BsmI GAATGC 1 cut(s) 564
BsnI GGCC 3 cut(s) 15, 143, 152
BsoBI CYCGRG 3 cut(s) 25, 218, 364
Bsp1286I GDGCHC 1 cut(s) 379
Bsp13I TCCGGA 1 cut(s) 224
Bsp143I GATC 3 cut(s) 227, 385, 529
BspACI CCGC 8 cut(s) 40, 63, 66, 75, 149, 167, 176, 293
BspANI GGCC 3 cut(s) 15, 143, 152
BspCNI CTCAG 1 cut(s) 490
BspDI ATCGAT 1 cut(s) 230
BspEI TCCGGA 1 cut(s) 224
BspLI GGNNCC 3 cut(s) 31, 122, 133
BspPI GGATC 1 cut(s) 235
BsrI ACTGG 3 cut(s) 93, 473, 585
BssECI CCNNGG 2 cut(s) 25, 144
BssMI GATC 3 cut(s) 227, 385, 529
BssNAI GTATAC 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 144
Bst1107I GTATAC 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 500
BstC8I GCNNGC 5 cut(s) 249, 264, 482, 491, 566
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 2 cut(s) 21, 532
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 3 cut(s) 230, 388, 532
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 3 cut(s) 227, 385, 529
BstMWI GCNNNNNNNGC 7 cut(s) 74, 149, 173, 422, 486, 490, 499
BstNSI RCATGY 1 cut(s) 544
BstSCI CCNGG 5 cut(s) 24, 25, 116, 122, 295
BstV1I GCAGC 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 398
BstZ17I GTATAC 1 cut(s) 315
Bsu15I ATCGAT 1 cut(s) 230
BsuI GTATCC 1 cut(s) 207
BsuRI GGCC 3 cut(s) 15, 143, 152
BsuTUI ATCGAT 1 cut(s) 230
BtrI CACGTC 1 cut(s) 286
BtsCI GGATG 2 cut(s) 21, 532
Cac8I GCNNGC 5 cut(s) 249, 264, 482, 491, 566
CfoI GCGC 1 cut(s) 564
Cfr13I GGNCC 1 cut(s) 120
Cfr9I CCCGGG 1 cut(s) 25
ClaI ATCGAT 1 cut(s) 230
Csp6I GTAC 2 cut(s) 274, 382
CviAII CATG 4 cut(s) 394, 451, 541, 546
CviQI GTAC 2 cut(s) 274, 382
DdeI CTNAG 1 cut(s) 498
DpnI GATC 3 cut(s) 229, 387, 531
DpnII GATC 3 cut(s) 227, 385, 529
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 500
EarI CTCTTC 1 cut(s) 500
EciI GGCGGA 2 cut(s) 52, 191
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 379
Eco32I GATATC 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 524
Eco88I CYCGRG 3 cut(s) 25, 218, 364
EcoRV GATATC 1 cut(s) 434
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 4 cut(s) 397, 454, 544, 549
FaqI GGGAC 2 cut(s) 100, 591
FatI CATG 4 cut(s) 393, 450, 540, 545
FauI CCCGC 2 cut(s) 47, 82
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 4 cut(s) 66, 150, 206, 293
FokI GGATG 2 cut(s) 8, 539
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 4 cut(s) 66, 150, 206, 293
FspBI CTAG 2 cut(s) 399, 555
FspI TGCGCA 1 cut(s) 563
GlaI GCGC 1 cut(s) 563
GluI GCNGC 4 cut(s) 66, 150, 206, 293
GsaI CCCAGC 1 cut(s) 212
HaeIII GGCC 3 cut(s) 15, 143, 152
HapII CCGG 5 cut(s) 26, 118, 124, 225, 296
HhaI GCGC 1 cut(s) 564
Hin1II CATG 4 cut(s) 397, 454, 544, 549
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HinfI GANTC 4 cut(s) 35, 221, 362, 475
HpaII CCGG 5 cut(s) 26, 118, 124, 225, 296
HphI GGTGA 4 cut(s) 43, 181, 401, 476
Hpy166II GTNNAC 1 cut(s) 315
Hpy188I TCNGA 2 cut(s) 361, 499
Hpy188III TCNNGA 3 cut(s) 225, 338, 389
Hpy8I GTNNAC 1 cut(s) 315
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 2 cut(s) 4, 425
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 149, 173, 422, 486, 490, 499
HpyF3I CTNAG 1 cut(s) 498
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 4 cut(s) 397, 454, 544, 549
HspAI GCGC 1 cut(s) 562
Kpn2I TCCGGA 1 cut(s) 224
Kzo9I GATC 3 cut(s) 227, 385, 529
LmnI GCTCC 4 cut(s) 29, 137, 187, 551
Lsp1109I GCAGC 1 cut(s) 192
MaeI CTAG 2 cut(s) 399, 555
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 169, 464
MalI GATC 3 cut(s) 229, 387, 531
MboI GATC 3 cut(s) 227, 385, 529
MboII GAAGA 4 cut(s) 398, 484, 517, 522
MhlI GDGCHC 1 cut(s) 379
MlyI GAGTC 2 cut(s) 230, 356
MmeI TCCRAC 1 cut(s) 339
MroI TCCGGA 1 cut(s) 224
MseI TTAA 1 cut(s) 138
MspA1I CMGCKG 2 cut(s) 262, 493
MspI CCGG 5 cut(s) 26, 118, 124, 225, 296
MspR9I CCNGG 5 cut(s) 26, 27, 118, 124, 297
Mva1269I GAATGC 1 cut(s) 564
MwoI GCNNNNNNNGC 7 cut(s) 74, 149, 173, 422, 486, 490, 499
NciI CCSGG 5 cut(s) 26, 27, 118, 124, 297
NdeII GATC 3 cut(s) 227, 385, 529
NlaIII CATG 4 cut(s) 397, 454, 544, 549
NlaIV GGNNCC 3 cut(s) 31, 122, 133
NmuCI GTSAC 2 cut(s) 169, 464
NsbI TGCGCA 1 cut(s) 563
NspI RCATGY 1 cut(s) 544
PaeR7I CTCGAG 1 cut(s) 364
PciI ACATGT 1 cut(s) 540
PctI GAATGC 1 cut(s) 564
PfeI GAWTC 2 cut(s) 35, 475
PflFI GACNNNGTC 1 cut(s) 355
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 4 cut(s) 67, 151, 207, 294
PleI GAGTC 2 cut(s) 229, 356
PpsI GAGTC 2 cut(s) 229, 356
PscI ACATGT 1 cut(s) 540
PspFI CCCAGC 1 cut(s) 208
PspN4I GGNNCC 3 cut(s) 31, 122, 133
PspPI GGNCC 1 cut(s) 120
PspXI VCTCGAGB 1 cut(s) 364
PsyI GACNNNGTC 1 cut(s) 355
PvuII CAGCTG 2 cut(s) 262, 493
RsaI GTAC 2 cut(s) 275, 383
RsaNI GTAC 2 cut(s) 274, 382
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 4 cut(s) 66, 150, 206, 293
Sau3AI GATC 3 cut(s) 227, 385, 529
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 2 cut(s) 230, 356
ScrFI CCNGG 5 cut(s) 26, 27, 118, 124, 297
SduI GDGCHC 1 cut(s) 379
SfiI GGCCNNNNNGGCC 1 cut(s) 149
Sfr274I CTCGAG 1 cut(s) 364
SinI GGWCC 1 cut(s) 120
SlaI CTCGAG 1 cut(s) 364
SmaI CCCGGG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
SsiI CCGC 8 cut(s) 40, 63, 66, 75, 149, 167, 176, 293
SspMI CTAG 2 cut(s) 399, 555
StyD4I CCNGG 5 cut(s) 24, 25, 116, 122, 295
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 1 cut(s) 288
TaqI TCGA 4 cut(s) 230, 306, 365, 532
TauI GCSGC 3 cut(s) 68, 152, 295
TfiI GAWTC 2 cut(s) 35, 475
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseFI GTSAC 2 cut(s) 169, 464
TseI GCWGC 1 cut(s) 205
Tsp45I GTSAC 2 cut(s) 169, 464
TspDTI ATGAA 1 cut(s) 173
TspMI CCCGGG 1 cut(s) 25
Tth111I GACNNNGTC 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 120
XceI RCATGY 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 364
XmaI CCCGGG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 314
XspI CTAG 2 cut(s) 399, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.