Rh4CG193400

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0012219
Physical Location & Seq
Reverse (-)
41482316 .. 41483558
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG193400.1

Sequence Viewer

Length: 606 bp
ATGCCAAGCTACGGCTTGACAATCCCGGGAGCCGATTCCCGCCTCTACGTCACCACCATCTCCACCGCCCGACCCGCGGCCGACCCGAAACCCAGTTCGCTGCCGGTGTTCTCGTCCCGGGCGACCCGGTTCGGGTCGATCAAGGCCAAGGCGGCGACGGTGAACGACGCGGCGGCGGCGGAGGAGGAGCGGAAGGAGCTGTCGTTTTACGAGCTGCTGGGGATACCCGAATCCGGATCCATAACGGAGATCAAGCAGGCGTACAAGCAGCTGGCAAGGAAGTACCACCCGGACGTGTCGCCGCCGGGTCGGGTCGAGGAGTATACGGAGAAGTTTATTCGGGTTCAGGAGGCGTATGAGACGTTGTCGGATTCGAGGAGGAGGGCTATGTATGATCAGGACATGGCCAGGGGTCTTCACCTTGCCTTCTCTGCTAGAAGATACCAATATGATGAGGGAATGGAAGGAAAAGGTGACTGGAAGAATCGCTGGCAAAGCCAGCTATCTGAGCTGAAGAGAAGAAGCTCATACAAGGATGATCGACAAAATATGACATGGGGAGCTAGAATGCGTCGGCAAAGAGAGGGACCGTCTGATGAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

201

Amino Acids

22.99

Weight (kDa)

9.32

Isoelectric Point (pI)

66.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 69 - 132 5.5e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13830 AT4G13830 AT4G13830
fragaria_vesca FvH4_4g13370
malus_domestica MD04G1016600.v1.1
prunus_persica Prupe.1G163300_v2.0.a1 Prupe.1G163300_v2.0.a1 Prupe.1G204200_v2.0.a1
pyrus_communis pycom04g01270
rosa_chinensis RchiOBHm_Chr4g0413741
rosa_laevigata RLG00000008197
rosa_multiflora Rmu_co8100182.1_g000001
rosa_roxburghii Rroxscaffold_5G00357660
rosa_rugosa Rorug04G0122800
rosa_samantha Rh4AG182200 Rh4BG181300 Rh4CG193400 Rh4DG177800
rosa_wichuraiana Rw4G015250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 190
AccI GTMKAC 1 cut(s) 323
AccII CGCG 2 cut(s) 77, 170
AccIII TCCGGA 1 cut(s) 233
AclWI GGATC 2 cut(s) 231, 244
AcoI YGGCCR 2 cut(s) 78, 405
AcuI CTGAAG 1 cut(s) 533
AfaI GTAC 2 cut(s) 263, 284
AfiI CCNNNNNNNGG 4 cut(s) 11, 76, 132, 233
AflIII ACRYGT 1 cut(s) 294
AjiI CACGTC 1 cut(s) 295
AjnI CCWGG 1 cut(s) 407
AluBI AGCT 8 cut(s) 9, 199, 214, 271, 502, 511, 525, 563
AluI AGCT 8 cut(s) 9, 199, 214, 271, 502, 511, 525, 563
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 2 cut(s) 231, 244
Ama87I CYCGRG 2 cut(s) 25, 117
Aor13HI TCCGGA 1 cut(s) 233
AoxI GGCC 3 cut(s) 78, 144, 405
ApeKI GCWGC 3 cut(s) 100, 214, 268
AspS9I GGNCC 1 cut(s) 587
AsuC2I CCSGG 7 cut(s) 26, 27, 118, 119, 127, 290, 306
AsuHPI GGTGA 4 cut(s) 43, 172, 410, 485
AvaI CYCGRG 2 cut(s) 25, 117
AvaII GGWCC 1 cut(s) 587
BalI TGGCCA 1 cut(s) 407
BamHI GGATCC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 407
BbvI GCAGC 3 cut(s) 87, 201, 280
BccI CCATC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 409
BciVI GTATCC 1 cut(s) 216
BclI TGATCA 1 cut(s) 394
BcnI CCSGG 7 cut(s) 26, 27, 118, 119, 127, 290, 306
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 2 cut(s) 435, 564
BfuI GTATCC 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 9 cut(s) 78, 101, 153, 171, 174, 177, 215, 269, 302
BlsI GCNGC 9 cut(s) 79, 102, 154, 172, 175, 178, 216, 270, 303
Bme1390I CCNGG 8 cut(s) 26, 27, 118, 119, 127, 290, 306, 409
Bme18I GGWCC 1 cut(s) 587
BmeT110I CYCGRG 2 cut(s) 25, 117
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 3 cut(s) 31, 238, 588
BmrFI CCNGG 8 cut(s) 26, 27, 118, 119, 127, 290, 306, 409
BmrI ACTGGG 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 407
BpuMI CCSGG 7 cut(s) 26, 27, 118, 119, 127, 290, 306
BsaJI CCNNGG 5 cut(s) 25, 75, 117, 147, 408
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 76, 132, 233
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 2 cut(s) 93, 482
BseAI TCCGGA 1 cut(s) 233
BseBI CCWGG 1 cut(s) 409
BseDI CCNNGG 5 cut(s) 25, 75, 117, 147, 408
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 4 cut(s) 11, 76, 132, 233
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 2 cut(s) 93, 482
BseRI GAGGAG 5 cut(s) 197, 200, 332, 391, 394
BseX3I CGGCCG 1 cut(s) 78
BseXI GCAGC 3 cut(s) 87, 201, 280
BseYI CCCAGC 1 cut(s) 217
Bsh1236I CGCG 2 cut(s) 77, 170
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 3 cut(s) 80, 146, 407
BsiEI CGRYCG 1 cut(s) 81
BsiHKCI CYCGRG 2 cut(s) 25, 117
BsiSI CCGG 7 cut(s) 26, 104, 118, 127, 234, 290, 305
BslFI GGGAC 2 cut(s) 100, 600
BslI CCNNNNNNNGG 4 cut(s) 11, 76, 132, 233
BsmAI GTCTC 1 cut(s) 353
BsmBI CGTCTC 1 cut(s) 353
BsmFI GGGAC 2 cut(s) 100, 600
BsmI GAATGC 1 cut(s) 573
BsnI GGCC 3 cut(s) 80, 146, 407
BsoBI CYCGRG 2 cut(s) 25, 117
Bsp13I TCCGGA 1 cut(s) 233
Bsp143I GATC 5 cut(s) 138, 236, 249, 394, 538
BspANI GGCC 3 cut(s) 80, 146, 407
BspCNI CTCAG 1 cut(s) 499
BspEI TCCGGA 1 cut(s) 233
BspFNI CGCG 2 cut(s) 77, 170
BspLI GGNNCC 3 cut(s) 31, 238, 588
BspPI GGATC 2 cut(s) 231, 244
BsrBI CCGCTC 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 103
BsrI ACTGG 2 cut(s) 93, 482
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 5 cut(s) 25, 75, 117, 147, 408
BssMI GATC 5 cut(s) 138, 236, 249, 394, 538
BssNAI GTATAC 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 147
Bst1107I GTATAC 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 2 cut(s) 160, 591
Bst6I CTCTTC 1 cut(s) 509
BstC8I GCNNGC 4 cut(s) 258, 273, 491, 500
BstDEI CTNAG 1 cut(s) 507
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 541
BstFNI CGCG 2 cut(s) 77, 170
BstKTI GATC 5 cut(s) 141, 239, 252, 397, 541
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 5 cut(s) 138, 236, 249, 394, 538
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 8 cut(s) 74, 152, 176, 196, 431, 495, 499, 508
BstNI CCWGG 1 cut(s) 409
BstSCI CCNGG 8 cut(s) 24, 25, 116, 117, 125, 288, 304, 407
BstUI CGCG 2 cut(s) 77, 170
BstV1I GCAGC 3 cut(s) 87, 201, 280
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BstZ17I GTATAC 1 cut(s) 324
BstZI CGGCCG 1 cut(s) 78
BsuI GTATCC 1 cut(s) 216
BsuRI GGCC 3 cut(s) 80, 146, 407
BtgI CCRYGG 1 cut(s) 75
BtrI CACGTC 1 cut(s) 295
BtsCI GGATG 1 cut(s) 541
Cac8I GCNNGC 4 cut(s) 258, 273, 491, 500
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 587
Cfr42I CCGCGG 1 cut(s) 78
Cfr9I CCCGGG 2 cut(s) 25, 117
CseI GACGC 2 cut(s) 176, 560
Csp6I GTAC 2 cut(s) 262, 283
CviAII CATG 2 cut(s) 403, 555
CviQI GTAC 2 cut(s) 262, 283
DdeI CTNAG 1 cut(s) 507
DpnI GATC 5 cut(s) 140, 238, 251, 396, 540
DpnII GATC 5 cut(s) 138, 236, 249, 394, 538
EaeI YGGCCR 2 cut(s) 78, 405
EagI CGGCCG 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 509
EarI CTCTTC 1 cut(s) 509
EciI GGCGGA 1 cut(s) 194
EclXI CGGCCG 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 587
Eco52I CGGCCG 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 533
Eco88I CYCGRG 2 cut(s) 25, 117
EcoRII CCWGG 1 cut(s) 407
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 353
FaeI CATG 2 cut(s) 406, 558
FaqI GGGAC 2 cut(s) 100, 600
FatI CATG 2 cut(s) 402, 554
FauI CCCGC 2 cut(s) 47, 82
FbaI TGATCA 1 cut(s) 394
FblI GTMKAC 1 cut(s) 323
Fnu4HI GCNGC 9 cut(s) 78, 101, 153, 171, 174, 177, 215, 269, 302
FokI GGATG 1 cut(s) 548
Fsp4HI GCNGC 9 cut(s) 78, 101, 153, 171, 174, 177, 215, 269, 302
FspBI CTAG 2 cut(s) 435, 564
GluI GCNGC 9 cut(s) 78, 101, 153, 171, 174, 177, 215, 269, 302
GsaI CCCAGC 1 cut(s) 221
HaeIII GGCC 3 cut(s) 80, 146, 407
HapII CCGG 7 cut(s) 26, 104, 118, 127, 234, 290, 305
HgaI GACGC 2 cut(s) 176, 560
Hin1II CATG 2 cut(s) 406, 558
HinfI GANTC 4 cut(s) 35, 230, 371, 484
HpaII CCGG 7 cut(s) 26, 104, 118, 127, 234, 290, 305
HphI GGTGA 4 cut(s) 43, 172, 410, 485
Hpy166II GTNNAC 2 cut(s) 163, 324
Hpy188I TCNGA 3 cut(s) 370, 508, 595
Hpy188III TCNNGA 3 cut(s) 234, 347, 398
Hpy8I GTNNAC 2 cut(s) 163, 324
Hpy99I CGWCG 3 cut(s) 160, 170, 576
HpyAV CCTTC 3 cut(s) 187, 436, 458
HpyCH4III ACNGT 2 cut(s) 160, 591
HpyCH4IV ACGT 3 cut(s) 48, 294, 362
HpyF10VI GCNNNNNNNGC 8 cut(s) 74, 152, 176, 196, 431, 495, 499, 508
HpyF3I CTNAG 1 cut(s) 507
HpySE526I ACGT 3 cut(s) 48, 294, 362
Hsp92II CATG 2 cut(s) 406, 558
Kpn2I TCCGGA 1 cut(s) 233
Ksp22I TGATCA 1 cut(s) 394
KspI CCGCGG 1 cut(s) 78
Kzo9I GATC 5 cut(s) 138, 236, 249, 394, 538
LmnI GCTCC 4 cut(s) 29, 187, 196, 560
Lsp1109I GCAGC 3 cut(s) 87, 201, 280
MaeI CTAG 2 cut(s) 435, 564
MaeII ACGT 3 cut(s) 48, 294, 362
MaeIII GTNAC 2 cut(s) 49, 473
MalI GATC 5 cut(s) 140, 238, 251, 396, 540
MbiI CCGCTC 1 cut(s) 190
MboI GATC 5 cut(s) 138, 236, 249, 394, 538
MboII GAAGA 5 cut(s) 407, 450, 493, 526, 531
MflI RGATCY 1 cut(s) 236
MlsI TGGCCA 1 cut(s) 407
MluNI TGGCCA 1 cut(s) 407
MmeI TCCRAC 1 cut(s) 348
Mox20I TGGCCA 1 cut(s) 407
MroI TCCGGA 1 cut(s) 233
MscI TGGCCA 1 cut(s) 407
Msp20I TGGCCA 1 cut(s) 407
MspA1I CMGCKG 2 cut(s) 77, 271
MspI CCGG 7 cut(s) 26, 104, 118, 127, 234, 290, 305
MspR9I CCNGG 8 cut(s) 26, 27, 118, 119, 127, 290, 306, 409
Mva1269I GAATGC 1 cut(s) 573
MvaI CCWGG 1 cut(s) 409
MvnI CGCG 2 cut(s) 77, 170
MwoI GCNNNNNNNGC 8 cut(s) 74, 152, 176, 196, 431, 495, 499, 508
NciI CCSGG 7 cut(s) 26, 27, 118, 119, 127, 290, 306
NdeII GATC 5 cut(s) 138, 236, 249, 394, 538
NlaIII CATG 2 cut(s) 406, 558
NlaIV GGNNCC 3 cut(s) 31, 238, 588
NmuCI GTSAC 2 cut(s) 49, 473
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PctI GAATGC 1 cut(s) 573
PfeI GAWTC 4 cut(s) 35, 230, 371, 484
PflFI GACNNNGTC 1 cut(s) 364
PkrI GCNGC 9 cut(s) 79, 102, 154, 172, 175, 178, 216, 270, 303
Psp6I CCWGG 1 cut(s) 407
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 1 cut(s) 407
PspN4I GGNNCC 3 cut(s) 31, 238, 588
PspPI GGNCC 1 cut(s) 587
PsuI RGATCY 1 cut(s) 236
PsyI GACNNNGTC 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 2 cut(s) 263, 284
RsaNI GTAC 2 cut(s) 262, 283
SacII CCGCGG 1 cut(s) 78
SatI GCNGC 9 cut(s) 78, 101, 153, 171, 174, 177, 215, 269, 302
Sau3AI GATC 5 cut(s) 138, 236, 249, 394, 538
Sau96I GGNCC 1 cut(s) 587
ScrFI CCNGG 8 cut(s) 26, 27, 118, 119, 127, 290, 306, 409
Sfr303I CCGCGG 1 cut(s) 78
SgrBI CCGCGG 1 cut(s) 78
SinI GGWCC 1 cut(s) 587
SmaI CCCGGG 2 cut(s) 27, 119
SspMI CTAG 2 cut(s) 435, 564
StyD4I CCNGG 8 cut(s) 24, 25, 116, 117, 125, 288, 304, 407
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 2 cut(s) 160, 591
TaiI ACGT 3 cut(s) 51, 297, 365
TaqI TCGA 4 cut(s) 137, 315, 374, 541
TauI GCSGC 6 cut(s) 80, 155, 173, 176, 179, 304
TfiI GAWTC 4 cut(s) 35, 230, 371, 484
TseFI GTSAC 2 cut(s) 49, 473
TseI GCWGC 3 cut(s) 100, 214, 268
Tsp45I GTSAC 2 cut(s) 49, 473
TspGWI ACGGA 2 cut(s) 260, 341
TspMI CCCGGG 2 cut(s) 25, 117
Tth111I GACNNNGTC 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 587
XmaI CCCGGG 2 cut(s) 25, 117
XmiI GTMKAC 1 cut(s) 323
XspI CTAG 2 cut(s) 435, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.