Rmu_co8100182.1_g000001

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8100182.1
OG0012219
Physical Location & Seq
Reverse (-)
1 .. 589
589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8100182.1_g000001.1.cds

Sequence Viewer

Length: 258 bp
ctgtcgttttacgagctgctggggatacccgagtccggatccataacggagatcaagcaggcgtacaagcagctggcaaggaagtaccacccggacgtgtcgccgccgggtcgggtcgaggagtatacggagaagtttattcgggttcaggaggcgtatgagacgttgtcggattcgaggaggagggctatgtatgatcaggacatggctaggggtcttcaccttgccttctctgctagaagataccaatatgatgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

86

Amino Acids

10.17

Weight (kDa)

6.16

Isoelectric Point (pI)

72.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13830 AT4G13830 AT4G13830
fragaria_vesca FvH4_4g13370
malus_domestica MD04G1016600.v1.1
prunus_persica Prupe.1G163300_v2.0.a1 Prupe.1G163300_v2.0.a1 Prupe.1G204200_v2.0.a1
pyrus_communis pycom04g01270
rosa_chinensis RchiOBHm_Chr4g0413741
rosa_laevigata RLG00000008197
rosa_multiflora Rmu_co8100182.1_g000001
rosa_roxburghii Rroxscaffold_5G00357660
rosa_rugosa Rorug04G0122800
rosa_samantha Rh4AG182200 Rh4BG181300 Rh4CG193400 Rh4DG177800
rosa_wichuraiana Rw4G015250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 125
AccIII TCCGGA 1 cut(s) 35
AciI CCGC 1 cut(s) 104
AclWI GGATC 2 cut(s) 33, 46
AfaI GTAC 2 cut(s) 65, 86
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 96
AjiI CACGTC 1 cut(s) 97
AluBI AGCT 2 cut(s) 16, 73
AluI AGCT 2 cut(s) 16, 73
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 2 cut(s) 33, 46
Ama87I CYCGRG 1 cut(s) 29
Aor13HI TCCGGA 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 16, 70
AsuC2I CCSGG 2 cut(s) 92, 108
AsuHPI GGTGA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 29
BaeI ACNNNNGTAYC 2 cut(s) 17, 50
BamHI GGATCC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 3, 82
BciVI GTATCC 1 cut(s) 18
BclI TGATCA 1 cut(s) 196
BcnI CCSGG 2 cut(s) 92, 108
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 2 cut(s) 210, 237
BfuI GTATCC 1 cut(s) 18
BisI GCNGC 3 cut(s) 17, 71, 104
BlsI GCNGC 3 cut(s) 18, 72, 105
Bme1390I CCNGG 2 cut(s) 92, 108
BmeT110I CYCGRG 1 cut(s) 29
BmgBI CACGTC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 2 cut(s) 92, 108
BpiI GAAGAC 1 cut(s) 209
BpuMI CCSGG 2 cut(s) 92, 108
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 35
BseAI TCCGGA 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 35
BseRI GAGGAG 3 cut(s) 134, 193, 196
BseXI GCAGC 2 cut(s) 3, 82
BseYI CCCAGC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 3 cut(s) 36, 92, 107
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 155
BsmBI CGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 29
Bsp13I TCCGGA 1 cut(s) 35
Bsp143I GATC 3 cut(s) 38, 51, 196
BspACI CCGC 1 cut(s) 104
BspEI TCCGGA 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 2 cut(s) 33, 46
BssMI GATC 3 cut(s) 38, 51, 196
BssNAI GTATAC 1 cut(s) 126
Bst1107I GTATAC 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 60, 75
BstKTI GATC 3 cut(s) 41, 54, 199
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 3 cut(s) 38, 51, 196
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 90, 106
BstV1I GCAGC 2 cut(s) 3, 82
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BstZ17I GTATAC 1 cut(s) 126
BsuI GTATCC 1 cut(s) 18
BtrI CACGTC 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 60, 75
Csp6I GTAC 2 cut(s) 64, 85
CviAII CATG 1 cut(s) 205
CviJI RGCY 4 cut(s) 16, 73, 188, 209
CviKI_1 RGCY 4 cut(s) 16, 73, 188, 209
CviQI GTAC 2 cut(s) 64, 85
DpnI GATC 3 cut(s) 40, 53, 198
DpnII GATC 3 cut(s) 38, 51, 196
Eco88I CYCGRG 1 cut(s) 29
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 1 cut(s) 208
FaiI YATR 7 cut(s) 44, 126, 159, 191, 195, 206, 252
FatI CATG 1 cut(s) 204
FbaI TGATCA 1 cut(s) 196
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 3 cut(s) 17, 71, 104
Fsp4HI GCNGC 3 cut(s) 17, 71, 104
FspBI CTAG 2 cut(s) 210, 237
GluI GCNGC 3 cut(s) 17, 71, 104
GsaI CCCAGC 1 cut(s) 23
HapII CCGG 3 cut(s) 36, 92, 107
Hin1II CATG 1 cut(s) 208
HinfI GANTC 2 cut(s) 32, 173
HpaII CCGG 3 cut(s) 36, 92, 107
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 3 cut(s) 36, 149, 200
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 238
HpyCH4IV ACGT 2 cut(s) 96, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpySE526I ACGT 2 cut(s) 96, 164
Hsp92II CATG 1 cut(s) 208
Kpn2I TCCGGA 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 3 cut(s) 38, 51, 196
LpnPI CCDG 8 cut(s) 5, 44, 49, 59, 105, 120, 134, 185
Lsp1109I GCAGC 2 cut(s) 3, 82
MaeI CTAG 2 cut(s) 210, 237
MaeII ACGT 2 cut(s) 96, 164
MalI GATC 3 cut(s) 40, 53, 198
MboI GATC 3 cut(s) 38, 51, 196
MboII GAAGA 2 cut(s) 209, 252
MflI RGATCY 1 cut(s) 38
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 5 cut(s) 112, 145, 171, 174, 177
MroI TCCGGA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 3 cut(s) 36, 92, 107
MspR9I CCNGG 2 cut(s) 92, 108
MwoI GCNNNNNNNGC 1 cut(s) 233
NciI CCSGG 2 cut(s) 92, 108
NdeII GATC 3 cut(s) 38, 51, 196
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 173
PflFI GACNNNGTC 1 cut(s) 166
PkrI GCNGC 3 cut(s) 18, 72, 105
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PspFI CCCAGC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 40
PsuI RGATCY 1 cut(s) 38
PsyI GACNNNGTC 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 2 cut(s) 65, 86
RsaNI GTAC 2 cut(s) 64, 85
SatI GCNGC 3 cut(s) 17, 71, 104
Sau3AI GATC 3 cut(s) 38, 51, 196
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 2 cut(s) 92, 108
SetI ASST 5 cut(s) 18, 75, 99, 167, 225
SsiI CCGC 1 cut(s) 104
SspMI CTAG 2 cut(s) 210, 237
StyD4I CCNGG 2 cut(s) 90, 106
TaiI ACGT 2 cut(s) 99, 167
TaqI TCGA 2 cut(s) 117, 176
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 173
TseI GCWGC 2 cut(s) 16, 70
TspGWI ACGGA 2 cut(s) 62, 143
Tth111I GACNNNGTC 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 125
XspI CTAG 2 cut(s) 210, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.