AT4G13980

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013239
Physical Location & Seq
Reverse (-)
8076903 .. 8079408
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13980.1

Sequence Viewer

Length: 1401 bp
ATGAACGGCGCATTAGGTAACTCCTCCGCCTCCGTTAGCGGCGGAGAAGGAGCCGGAGGACCAGCGCCTTTCTTGGTGAAAACCTACGAGATGGTCGACGATTCATCAACGGACCAGATCGTATCGTGGAGCGCTAACAACAACAGCTTCATCGTTTGGAATCATGCCGAATTTTCACGCCTCCTTCTTCCAACCTACTTCAAACACAATAACTTCTCTTCCTTCATTCGTCAGCTCAATACCTATGGGTTTAGGAAGATTGATCCAGAGAGGTGGGAGTTTTTGAATGATGATTTTATTAAGGATCAGAAGCATCTTCTCAAGAATATACATAGAAGGAAACCTATACACAGCCACAGTCATCCACCTGCTTCGTCGACTGATCAAGAAAGAGCAGTGTTGCAAGAGCAAATGGACAAGCTTTCACGTGAGAAAGCTGCAATTGAAGCTAAGCTTTTAAAGTTCAAACAACAGAAGGTTGTAGCAAAGCATCAGTTTGAAGAAATGACTGAGCATGTTGATGATATGGAGAATAGGCAGAAGAAGCTGCTGAATTTTTTGGAAACTGCGATTCGGAATCCTACTTTTGTTAAGAATTTTGGTAAGAAAGTCGAGCAGTTGGATATTTCAGCTTACAACAAAAAGCGAAGGCTCCCTGAAGTTGAGCAATCAAAGCCACCTTCAGAAGATTCTCATCTGGATAATAGTAGTGGTAGCTCGAGACGCGAGTCTGGAAACATTTTTCATCAAAATTTCTCTAATAAATTGCGACTAGAGCTTTCTCCAGCTGATTCAGATATGAACATGGTTTCACACAGTATACAAAGTTCCAATGAAGAAGGTGCGAGTCCCAAAGGGATACTGTCAGGAGGTGATCCAAATACTACACTAACAAAAAGAGAAGGCCTACCATTTGCACCTGAAGCTCTAGAGCTTGCGGATACCGGGACATGCCCGAGGAGATTACTGTTAAATGATAATACAAGGGTGGAGACCTTGCAGCAGAGGCTAACTTCTTCAGAGGAGACTGATGGTAGCTTTTCATGTCATTTAAATCTAACCCTGGCTTCTGCTCCGTTACCGGACAAAACAGCTTCACAGATAGCTAAGACGACTCTTAAAAGTCAGGAGTTAAACTTTAACTCAATAGAAACAAGTGCAAGTGAGAAAAATCGGGGTAGACAAGAGATTGCAGTTGGAGGTAGCCAAGCAAATGCAGCTCCTCCAGCAAGAGTGAATGATGTATTCTGGGAACAGTTCCTAACAGAAAGGCCAGGGTCTTCAGATAATGAGGAGGCAAGTTCGACTTATAGAGGTAACCCATACGAAGAGCAAGAGGAGAAAAGAAACGGGAGTATGATGTTACGTAATACAAAGAATATCGAGCAGCTGACCTTATAA

Protein Analysis

466

Amino Acids

52.35

Weight (kDa)

6.16

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 24 - 113 1.3e-28 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013239)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13980
fragaria_vesca FvH4_4g13230
malus_domestica MD00G1118600.v1.1 MD04G1017400.v1.1
prunus_persica Prupe.1G165500_v2.0.a1
pyrus_communis pycom04g01380 pycom420g00940
rosa_chinensis RchiOBHm_Chr4g0413481
rosa_laevigata RLG00000008216
rosa_multiflora Rmu_sc0000883.1_g000011
rosa_roxburghii Rroxscaffold_5G00357380
rosa_rugosa Rorug04G0120600
rosa_samantha Rh4AG180300 Rh4BG179600 Rh4CG191300 Rh4DG175500
rosa_wichuraiana Rw4G015010 Rw4G015070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1399
AarI CACCTGC 1 cut(s) 376
Acc36I ACCTGC 1 cut(s) 376
AccI GTMKAC 4 cut(s) 96, 377, 820, 1180
AccII CGCG 1 cut(s) 726
AciI CCGC 4 cut(s) 27, 39, 42, 938
AclWI GGATC 3 cut(s) 257, 312, 869
AcsI RAATTY 4 cut(s) 170, 553, 595, 751
AcuI CTGAAG 5 cut(s) 666, 678, 942, 1002, 1266
AcvI CACGTG 1 cut(s) 428
AfeI AGCGCT 1 cut(s) 133
AgsI TTSAA 5 cut(s) 202, 286, 446, 466, 500
AjnI CCWGG 2 cut(s) 1062, 1273
Alw26I GTCTC 3 cut(s) 715, 986, 1019
AlwI GGATC 3 cut(s) 257, 312, 869
Ama87I CYCGRG 2 cut(s) 718, 955
Aor51HI AGCGCT 1 cut(s) 133
AoxI GGCC 2 cut(s) 904, 1271
ApeKI GCWGC 5 cut(s) 437, 547, 1000, 1217, 1387
ApoI RAATTY 4 cut(s) 170, 553, 595, 751
AspLEI GCGC 3 cut(s) 11, 67, 134
AspS9I GGNCC 2 cut(s) 59, 112
AsuC2I CCSGG 1 cut(s) 946
AsuHPI GGTGA 2 cut(s) 88, 884
AvaI CYCGRG 2 cut(s) 718, 955
AvaII GGWCC 2 cut(s) 59, 112
BbrPI CACGTG 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 1272
BbvI GCAGC 4 cut(s) 424, 534, 1012, 1229
BccI CCATC 2 cut(s) 85, 1025
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 2 cut(s) 1064, 1275
BciVI GTATCC 2 cut(s) 852, 934
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 946
BcoDI GTCTC 3 cut(s) 715, 986, 1019
BfaI CTAG 2 cut(s) 773, 929
BfoI RGCGCY 2 cut(s) 68, 135
BfuAI ACCTGC 1 cut(s) 376
BfuI GTATCC 2 cut(s) 852, 934
BisI GCNGC 6 cut(s) 40, 438, 548, 1001, 1218, 1388
BlpI GCTNAGC 1 cut(s) 450
BlsI GCNGC 6 cut(s) 41, 439, 549, 1002, 1219, 1389
Bme1390I CCNGG 3 cut(s) 946, 1064, 1275
Bme18I GGWCC 2 cut(s) 59, 112
BmeT110I CYCGRG 2 cut(s) 718, 955
BmgT120I GGNCC 2 cut(s) 59, 112
BmiI GGNNCC 2 cut(s) 52, 653
BmrFI CCNGG 3 cut(s) 946, 1064, 1275
BmsI GCATC 2 cut(s) 322, 499
BoxI GACNNNNGTC 1 cut(s) 727
BpiI GAAGAC 1 cut(s) 1272
BpmI CTGGAG 2 cut(s) 768, 1209
Bpu1102I GCTNAGC 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 946
BsaAI YACGTR 2 cut(s) 428, 1367
BsaBI GATNNNNATC 1 cut(s) 693
BsaI GGTCTC 1 cut(s) 986
BsaJI CCNNGG 3 cut(s) 956, 1062, 1274
BsaWI WCCGGW 1 cut(s) 1081
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 2 cut(s) 1064, 1275
BseDI CCNNGG 3 cut(s) 956, 1062, 1274
BseGI GGATG 1 cut(s) 361
BseJI GATNNNNATC 1 cut(s) 693
BseMII CTCAG 1 cut(s) 501
BseRI GAGGAG 6 cut(s) 13, 973, 1037, 1212, 1307, 1352
BseXI GCAGC 4 cut(s) 424, 534, 1012, 1229
Bsh1236I CGCG 1 cut(s) 726
BshFI GGCC 2 cut(s) 906, 1273
BsiHKCI CYCGRG 2 cut(s) 718, 955
BsiSI CCGG 3 cut(s) 54, 945, 1082
BslFI GGGAC 2 cut(s) 834, 961
BsmAI GTCTC 3 cut(s) 715, 986, 1019
BsmBI CGTCTC 1 cut(s) 715
BsmFI GGGAC 2 cut(s) 834, 961
BsnI GGCC 2 cut(s) 906, 1273
Bso31I GGTCTC 1 cut(s) 986
BsoBI CYCGRG 2 cut(s) 718, 955
Bsp143I GATC 5 cut(s) 117, 262, 304, 382, 874
Bsp1720I GCTNAGC 1 cut(s) 450
BspACI CCGC 4 cut(s) 27, 39, 42, 938
BspANI GGCC 2 cut(s) 906, 1273
BspCNI CTCAG 1 cut(s) 502
BspFNI CGCG 1 cut(s) 726
BspLI GGNNCC 2 cut(s) 52, 653
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 3 cut(s) 257, 312, 869
BspQI GCTCTTC 1 cut(s) 1323
BspTNI GGTCTC 1 cut(s) 986
BssECI CCNNGG 3 cut(s) 956, 1062, 1274
BssMI GATC 5 cut(s) 117, 262, 304, 382, 874
BssNAI GTATAC 1 cut(s) 821
Bst1107I GTATAC 1 cut(s) 821
Bst2UI CCWGG 2 cut(s) 1064, 1275
Bst4CI ACNGT 5 cut(s) 359, 818, 864, 969, 1257
Bst6I CTCTTC 2 cut(s) 223, 1323
BstBAI YACGTR 2 cut(s) 428, 1367
BstC8I GCNNGC 1 cut(s) 936
BstDEI CTNAG 3 cut(s) 450, 510, 1107
BstEII GGTNACC 1 cut(s) 1316
BstF5I GGATG 1 cut(s) 361
BstFNI CGCG 1 cut(s) 726
BstH2I RGCGCY 2 cut(s) 68, 135
BstHHI GCGC 3 cut(s) 11, 67, 134
BstKTI GATC 5 cut(s) 120, 265, 307, 385, 877
BstMAI GTCTC 3 cut(s) 715, 986, 1019
BstMBI GATC 5 cut(s) 117, 262, 304, 382, 874
BstMWI GCNNNNNNNGC 9 cut(s) 446, 544, 673, 723, 775, 923, 1006, 1217, 1226
BstNI CCWGG 2 cut(s) 1064, 1275
BstNSI RCATGY 2 cut(s) 518, 954
BstPAI GACNNNNGTC 1 cut(s) 727
BstPI GGTNACC 1 cut(s) 1316
BstSCI CCNGG 3 cut(s) 944, 1062, 1273
BstSNI TACGTA 1 cut(s) 1367
BstUI CGCG 1 cut(s) 726
BstV1I GCAGC 4 cut(s) 424, 534, 1012, 1229
BstV2I GAAGAC 1 cut(s) 1272
BstXI CCANNNNNNTGG 1 cut(s) 273
BstZ17I GTATAC 1 cut(s) 821
BsuI GTATCC 2 cut(s) 852, 934
BsuRI GGCC 2 cut(s) 906, 1273
BtsCI GGATG 1 cut(s) 361
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 1 cut(s) 402
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 936
CfoI GCGC 3 cut(s) 11, 67, 134
Cfr13I GGNCC 2 cut(s) 59, 112
CseI GACGC 1 cut(s) 732
CviAII CATG 5 cut(s) 164, 515, 805, 951, 1044
DdeI CTNAG 3 cut(s) 450, 510, 1107
DpnI GATC 5 cut(s) 119, 264, 306, 384, 876
DpnII GATC 5 cut(s) 117, 262, 304, 382, 874
DraI TTTAAA 2 cut(s) 459, 1053
Eam1104I CTCTTC 2 cut(s) 223, 1323
EarI CTCTTC 2 cut(s) 223, 1323
EciI GGCGGA 2 cut(s) 16, 57
Eco105I TACGTA 1 cut(s) 1367
Eco147I AGGCCT 1 cut(s) 906
Eco31I GGTCTC 1 cut(s) 986
Eco47I GGWCC 2 cut(s) 59, 112
Eco47III AGCGCT 1 cut(s) 133
Eco57I CTGAAG 5 cut(s) 666, 678, 942, 1002, 1266
Eco72I CACGTG 1 cut(s) 428
Eco88I CYCGRG 2 cut(s) 718, 955
Eco91I GGTNACC 1 cut(s) 1316
EcoO65I GGTNACC 1 cut(s) 1316
EcoRII CCWGG 2 cut(s) 1062, 1273
Esp3I CGTCTC 1 cut(s) 715
FaeI CATG 5 cut(s) 167, 518, 808, 954, 1047
FalI AAGNNNNNCTT 4 cut(s) 438, 470, 1291, 1323
FaqI GGGAC 2 cut(s) 834, 961
FatI CATG 5 cut(s) 163, 514, 804, 950, 1043
FbaI TGATCA 1 cut(s) 382
FblI GTMKAC 4 cut(s) 96, 377, 820, 1180
Fnu4HI GCNGC 6 cut(s) 40, 438, 548, 1001, 1218, 1388
FokI GGATG 1 cut(s) 348
Fsp4HI GCNGC 6 cut(s) 40, 438, 548, 1001, 1218, 1388
FspBI CTAG 2 cut(s) 773, 929
GlaI GCGC 3 cut(s) 10, 66, 133
GluI GCNGC 6 cut(s) 40, 438, 548, 1001, 1218, 1388
GsuI CTGGAG 2 cut(s) 768, 1209
HaeII RGCGCY 2 cut(s) 68, 135
HaeIII GGCC 2 cut(s) 906, 1273
HapII CCGG 3 cut(s) 54, 945, 1082
HgaI GACGC 1 cut(s) 732
HhaI GCGC 3 cut(s) 11, 67, 134
Hin1II CATG 5 cut(s) 167, 518, 808, 954, 1047
Hin6I GCGC 3 cut(s) 9, 65, 132
HinP1I GCGC 3 cut(s) 9, 65, 132
HincII GTYRAC 2 cut(s) 97, 378
HindII GTYRAC 2 cut(s) 97, 378
HindIII AAGCTT 2 cut(s) 419, 452
HinfI GANTC 9 cut(s) 101, 160, 571, 577, 689, 728, 791, 847, 1114
HpaII CCGG 3 cut(s) 54, 945, 1082
HphI GGTGA 2 cut(s) 88, 884
Hpy166II GTNNAC 4 cut(s) 97, 378, 821, 1181
Hpy188I TCNGA 6 cut(s) 309, 576, 685, 796, 1021, 1285
Hpy188III TCNNGA 9 cut(s) 266, 322, 386, 698, 720, 732, 867, 929, 1127
Hpy8I GTNNAC 4 cut(s) 97, 378, 821, 1181
Hpy99I CGWCG 2 cut(s) 101, 379
HpyAV CCTTC 9 cut(s) 41, 194, 232, 330, 469, 642, 690, 833, 896
HpyCH4III ACNGT 5 cut(s) 359, 818, 864, 969, 1257
HpyCH4IV ACGT 2 cut(s) 427, 1366
HpyCH4V TGCA 7 cut(s) 403, 440, 917, 1000, 1160, 1193, 1217
HpyF10VI GCNNNNNNNGC 9 cut(s) 446, 544, 673, 723, 775, 923, 1006, 1217, 1226
HpyF3I CTNAG 3 cut(s) 450, 510, 1107
HpySE526I ACGT 2 cut(s) 427, 1366
Hsp92II CATG 5 cut(s) 167, 518, 808, 954, 1047
HspAI GCGC 3 cut(s) 9, 65, 132
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 5 cut(s) 117, 262, 304, 382, 874
LguI GCTCTTC 1 cut(s) 1323
LmnI GCTCC 5 cut(s) 50, 129, 657, 1078, 1225
Lsp1109I GCAGC 4 cut(s) 424, 534, 1012, 1229
LweI GCATC 2 cut(s) 322, 499
MaeI CTAG 2 cut(s) 773, 929
MaeII ACGT 2 cut(s) 427, 1366
MaeIII GTNAC 4 cut(s) 17, 1077, 1316, 1362
MalI GATC 5 cut(s) 119, 264, 306, 384, 876
MboI GATC 5 cut(s) 117, 262, 304, 382, 874
MfeI CAATTG 1 cut(s) 441
MluCI AATT 6 cut(s) 170, 441, 553, 595, 751, 764
MlyI GAGTC 3 cut(s) 737, 856, 1108
MmeI TCCRAC 3 cut(s) 215, 600, 1177
MseI TTAA 8 cut(s) 300, 458, 591, 971, 1052, 1119, 1133, 1140
MslI CAYNNNNRTG 1 cut(s) 519
MspA1I CMGCKG 2 cut(s) 788, 1390
MspI CCGG 3 cut(s) 54, 945, 1082
MspR9I CCNGG 3 cut(s) 946, 1064, 1275
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 2 cut(s) 1064, 1275
MvnI CGCG 1 cut(s) 726
MwoI GCNNNNNNNGC 9 cut(s) 446, 544, 673, 723, 775, 923, 1006, 1217, 1226
NciI CCSGG 1 cut(s) 946
NdeII GATC 5 cut(s) 117, 262, 304, 382, 874
NlaIII CATG 5 cut(s) 167, 518, 808, 954, 1047
NlaIV GGNNCC 2 cut(s) 52, 653
NspI RCATGY 2 cut(s) 518, 954
PaeR7I CTCGAG 1 cut(s) 718
PaqCI CACCTGC 1 cut(s) 376
PceI AGGCCT 1 cut(s) 906
PciSI GCTCTTC 1 cut(s) 1323
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 6 cut(s) 101, 160, 571, 577, 689, 791
PkrI GCNGC 6 cut(s) 41, 439, 549, 1002, 1219, 1389
PleI GAGTC 3 cut(s) 736, 855, 1108
PmaCI CACGTG 1 cut(s) 428
PmlI CACGTG 1 cut(s) 428
PpsI GAGTC 3 cut(s) 736, 855, 1108
Ppu21I YACGTR 2 cut(s) 428, 1367
PshAI GACNNNNGTC 1 cut(s) 727
PsiI TTATAA 1 cut(s) 1399
Psp6I CCWGG 2 cut(s) 1062, 1273
PspCI CACGTG 1 cut(s) 428
PspEI GGTNACC 1 cut(s) 1316
PspGI CCWGG 2 cut(s) 1062, 1273
PspN4I GGNNCC 2 cut(s) 52, 653
PspPI GGNCC 2 cut(s) 59, 112
PsrI GAACNNNNNNTAC 2 cut(s) 811, 843
PvuII CAGCTG 2 cut(s) 788, 1390
RseI CAYNNNNRTG 1 cut(s) 519
SalI GTCGAC 2 cut(s) 95, 376
SapI GCTCTTC 1 cut(s) 1323
SaqAI TTAA 8 cut(s) 300, 458, 591, 971, 1052, 1119, 1133, 1140
SatI GCNGC 6 cut(s) 40, 438, 548, 1001, 1218, 1388
Sau3AI GATC 5 cut(s) 117, 262, 304, 382, 874
Sau96I GGNCC 2 cut(s) 59, 112
SchI GAGTC 3 cut(s) 737, 856, 1108
ScrFI CCNGG 3 cut(s) 946, 1064, 1275
SfaNI GCATC 2 cut(s) 322, 499
Sfr274I CTCGAG 1 cut(s) 718
SinI GGWCC 2 cut(s) 59, 112
SlaI CTCGAG 1 cut(s) 718
SmiI ATTTAAAT 1 cut(s) 1053
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 2 cut(s) 320, 718
SmoI CTYRAG 2 cut(s) 320, 718
SnaBI TACGTA 1 cut(s) 1367
Sse9I AATT 6 cut(s) 170, 441, 553, 595, 751, 764
SseBI AGGCCT 1 cut(s) 906
SsiI CCGC 4 cut(s) 27, 39, 42, 938
SspMI CTAG 2 cut(s) 773, 929
StuI AGGCCT 1 cut(s) 906
StyD4I CCNGG 3 cut(s) 944, 1062, 1273
SwaI ATTTAAAT 1 cut(s) 1053
TaaI ACNGT 5 cut(s) 359, 818, 864, 969, 1257
TaiI ACGT 2 cut(s) 430, 1369
TaqI TCGA 6 cut(s) 96, 377, 612, 719, 1304, 1383
TasI AATT 6 cut(s) 170, 441, 553, 595, 751, 764
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 6 cut(s) 101, 160, 571, 577, 689, 791
Tru1I TTAA 8 cut(s) 300, 458, 591, 971, 1052, 1119, 1133, 1140
Tru9I TTAA 8 cut(s) 300, 458, 591, 971, 1052, 1119, 1133, 1140
TscAI CASTG 1 cut(s) 402
TseI GCWGC 5 cut(s) 437, 547, 1000, 1217, 1387
TspDTI ATGAA 8 cut(s) 17, 93, 139, 214, 734, 815, 849, 1032
TspGWI ACGGA 3 cut(s) 22, 125, 1065
TspRI CASTG 1 cut(s) 402
VpaK11BI GGWCC 2 cut(s) 59, 112
XapI RAATTY 4 cut(s) 170, 553, 595, 751
XbaI TCTAGA 1 cut(s) 928
XceI RCATGY 2 cut(s) 518, 954
XhoI CTCGAG 1 cut(s) 718
XmiI GTMKAC 4 cut(s) 96, 377, 820, 1180
XspI CTAG 2 cut(s) 773, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.