Rmu_sc0000883.1_g000011

Heat Stress Transcription Factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000883.1
Physical Location & Seq
Reverse (-)
52384 .. 55735
3352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000883.1_g000011.1.cds

Sequence Viewer

Length: 1599 bp
ctggctggctgccgggcaaaaagcttcgaaactcttctattccattctctcctctctctctacaccttccgatccccacttcctccatctctctccgccgttacacccattcggatcccaatccaagtccgacccgccgaatcccccgacccgactcgtctttgcaaaatggacggaacctctgctgctggcggaggcggcggtccggcgcccttcttactgaagacgtacgacatggtggacgactcggcgacggacgagatcgtgtcgtggagctccaacaagaagagcttcgtcgtctggaaccctccagaattcgctcggattctgctccccacctatttcaagcacaacaacttctctagcttcatccgtcagctcaatacctacggatttcgaaagattgatcctgaaagatgggagtttgctaatgaagaatttatacaagatcaaaagcatcttcttaagaatattcatcgcagaaaacccattcatagccacagtaatcctcagggttctatggttgatcaggaaagagcagctcttgatgatgaaatagagaagctatcaaacgaaaaagctgcacttgaggcaaatatttcgaggttccagcagcagcgatctgctgaaaagcttcagttggaagacctgacacagcgggtaaatggtatggagcagcggcagaagaatttactaacattcttagataaagctgttcagaaccctgcctttgttgaacatctagcccgaaaaattgaatctatggatttctcagcgtataacaagaaaaggcgactgcctgatgcggacaactcaaagccagttgtggacaatagttttgtggataaccaaagtagctccagatcggagtttggaaattttttccaccaagacttttcaagtaagctgagactggaattatctccagctgtttcagacatgaacctggtttcacgtagcacccagagttccaatgaagatggggatagttcaagtaggaaaatatcggaagaactgaaaggtgcacagatgagaacagaaggccttttatttgcgaatgaaccactagaactttcagatactggaacatcttttgcattcaaaatggattcgttgtcacgaaaagcaccaaatgttggaagccctggacttcattccttgcagccaggtttgccttctaatgaagatagtgatggccagataacctgtcacttaaatctcacactatcatcttctcccttgaaagtgatcagtagcccgcattcagctacggtacccctagtaggtcaggacatttgcaactccccatccccaggtttgaatgccactaacaaagaatcagatataagagcccttccacagaaaaatctggctgatgaagacaggcctaaaagttcccaaaaagaggccacaaaacacagtaaagggcatacatctgttccagttagagtaaatgatgttttctgggaacagttcctaacagaaagacctggttgttcagagaatgaagaagcgagttctaattttagagaaaatccgtatgatgagcaagatggaatggccagaaatgctaaaggtgcagaaacacttactctttga

Protein Analysis

532

Amino Acids

59.3

Weight (kDa)

5.97

Isoelectric Point (pI)

57.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013239)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1273
AccB1I GGYRCC 2 cut(s) 208, 1273
AccB7I CCANNNNNTGG 1 cut(s) 1136
AciI CCGC 9 cut(s) 96, 135, 192, 198, 201, 658, 679, 806, 1259
AclWI GGATC 4 cut(s) 66, 109, 122, 401
AcoI YGGCCR 2 cut(s) 1195, 1560
AcsI RAATTY 4 cut(s) 314, 437, 688, 877
AcuI CTGAAG 2 cut(s) 242, 620
AcyI GRCGYC 1 cut(s) 209
AfaI GTAC 2 cut(s) 230, 1275
AfiI CCNNNNNNNGG 4 cut(s) 1136, 1283, 1313, 1405
AflII CTTAAG 1 cut(s) 464
AgsI TTSAA 8 cut(s) 346, 737, 758, 900, 993, 1102, 1243, 1321
AjnI CCWGG 5 cut(s) 945, 1144, 1165, 1312, 1489
Alw21I GWGCWC 2 cut(s) 278, 1027
Alw26I GTCTC 1 cut(s) 904
Alw44I GTGCAC 1 cut(s) 1023
AlwI GGATC 4 cut(s) 66, 109, 122, 401
AlwNI CAGNNNCTG 1 cut(s) 1082
AoxI GGCC 5 cut(s) 1042, 1195, 1385, 1407, 1560
ApaLI GTGCAC 1 cut(s) 1023
ApeKI GCWGC 8 cut(s) 9, 185, 539, 581, 613, 616, 676, 1162
ApoI RAATTY 4 cut(s) 314, 437, 688, 877
ArsI GACNNNNNNTTYG 2 cut(s) 821, 853
Asp700I GAANNNNTTC 3 cut(s) 33, 290, 633
Asp718I GGTACC 1 cut(s) 1273
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 14
AsuII TTCGAA 2 cut(s) 27, 397
AvaII GGWCC 1 cut(s) 203
AxyI CCTNAGG 1 cut(s) 510
BaeGI GKGCMC 1 cut(s) 1027
BalI TGGCCA 2 cut(s) 1197, 1562
BamHI GGATCC 1 cut(s) 114
BanI GGYRCC 2 cut(s) 208, 1273
BanII GRGCYC 2 cut(s) 278, 1354
BarI GAAGNNNNNNTAC 2 cut(s) 426, 458
BbsI GAAGAC 3 cut(s) 230, 651, 1386
Bbv12I GWGCWC 2 cut(s) 278, 1027
BbvI GCAGC 7 cut(s) 172, 551, 568, 625, 628, 688, 1174
BccI CCATC 6 cut(s) 94, 411, 974, 1187, 1315, 1547
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 4 cut(s) 563, 582, 597, 616
BciT130I CCWGG 5 cut(s) 947, 1146, 1167, 1314, 1491
BclI TGATCA 2 cut(s) 526, 1248
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 904
BfaI CTAG 4 cut(s) 363, 743, 1067, 1280
BfoI RGCGCY 1 cut(s) 212
BfrI CTTAAG 1 cut(s) 464
Bme1390I CCNGG 6 cut(s) 14, 947, 1146, 1167, 1314, 1491
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 6 cut(s) 116, 178, 210, 305, 608, 1275
BmrFI CCNGG 6 cut(s) 14, 947, 1146, 1167, 1314, 1491
BmsI GCATC 2 cut(s) 466, 793
BpiI GAAGAC 3 cut(s) 230, 651, 1386
BpmI CTGGAG 3 cut(s) 294, 844, 909
Bpu14I TTCGAA 2 cut(s) 27, 397
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 956
BsaBI GATNNNNATC 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 209
BsaJI CCNNGG 2 cut(s) 1144, 1312
Bsc4I CCNNNNNNNGG 4 cut(s) 1136, 1283, 1313, 1405
Bse1I ACTGG 4 cut(s) 821, 918, 1087, 1442
Bse21I CCTNAGG 1 cut(s) 510
Bse8I GATNNNNATC 1 cut(s) 119
BseBI CCWGG 5 cut(s) 947, 1146, 1167, 1314, 1491
BseDI CCNNGG 2 cut(s) 1144, 1312
BseGI GGATG 2 cut(s) 369, 1307
BseJI GATNNNNATC 1 cut(s) 119
BseLI CCNNNNNNNGG 4 cut(s) 1136, 1283, 1313, 1405
BseMII CTCAG 3 cut(s) 524, 786, 899
BseNI ACTGG 4 cut(s) 821, 918, 1087, 1442
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 1027
BseXI GCAGC 7 cut(s) 172, 551, 568, 625, 628, 688, 1174
BsgI GTGCAG 2 cut(s) 567, 1599
BshFI GGCC 5 cut(s) 1044, 1197, 1387, 1409, 1562
BshNI GGYRCC 2 cut(s) 208, 1273
BsiHKAI GWGCWC 2 cut(s) 278, 1027
BsiSI CCGG 2 cut(s) 13, 206
BsiWI CGTACG 1 cut(s) 228
BslI CCNNNNNNNGG 4 cut(s) 1136, 1283, 1313, 1405
BsmAI GTCTC 1 cut(s) 904
BsmI GAATGC 3 cut(s) 1097, 1261, 1327
BsnI GGCC 5 cut(s) 1044, 1197, 1387, 1409, 1562
Bsp119I TTCGAA 2 cut(s) 27, 397
Bsp1286I GDGCHC 3 cut(s) 278, 1027, 1354
Bsp143I GATC 9 cut(s) 71, 114, 261, 406, 448, 526, 620, 863, 1248
BspACI CCGC 9 cut(s) 96, 135, 192, 198, 201, 658, 679, 806, 1259
BspANI GGCC 5 cut(s) 1044, 1197, 1387, 1409, 1562
BspCNI CTCAG 3 cut(s) 523, 785, 900
BspLI GGNNCC 6 cut(s) 116, 178, 210, 305, 608, 1275
BspPI GGATC 4 cut(s) 66, 109, 122, 401
BspQI GCTCTTC 1 cut(s) 281
BspT104I TTCGAA 2 cut(s) 27, 397
BspT107I GGYRCC 2 cut(s) 208, 1273
BspTI CTTAAG 1 cut(s) 464
BsrI ACTGG 4 cut(s) 821, 918, 1087, 1442
BssECI CCNNGG 2 cut(s) 1144, 1312
BssMI GATC 9 cut(s) 71, 114, 261, 406, 448, 526, 620, 863, 1248
BssNI GRCGYC 1 cut(s) 209
Bst2UI CCWGG 5 cut(s) 947, 1146, 1167, 1314, 1491
Bst4CI ACNGT 4 cut(s) 503, 1273, 1421, 1473
Bst6I CTCTTC 2 cut(s) 39, 281
BstACI GRCGYC 1 cut(s) 209
BstAFI CTTAAG 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 956
BstBI TTCGAA 2 cut(s) 27, 397
BstC8I GCNNGC 3 cut(s) 7, 190, 1259
BstDEI CTNAG 4 cut(s) 510, 703, 772, 908
BstF5I GGATG 2 cut(s) 369, 1307
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 9 cut(s) 74, 117, 264, 409, 451, 529, 623, 866, 1251
BstMAI GTCTC 1 cut(s) 904
BstMBI GATC 9 cut(s) 71, 114, 261, 406, 448, 526, 620, 863, 1248
BstMWI GCNNNNNNNGC 5 cut(s) 198, 590, 1171, 1568, 1577
BstNI CCWGG 5 cut(s) 947, 1146, 1167, 1314, 1491
BstSCI CCNGG 6 cut(s) 12, 945, 1144, 1165, 1312, 1489
BstSLI GKGCMC 1 cut(s) 1027
BstV1I GCAGC 7 cut(s) 172, 551, 568, 625, 628, 688, 1174
BstV2I GAAGAC 3 cut(s) 230, 651, 1386
BstX2I RGATCY 1 cut(s) 114
BstYI RGATCY 1 cut(s) 114
Bsu36I CCTNAGG 1 cut(s) 510
BsuRI GGCC 5 cut(s) 1044, 1197, 1387, 1409, 1562
BtgZI GCGATG 1 cut(s) 461
BtsCI GGATG 2 cut(s) 369, 1307
Cac8I GCNNGC 3 cut(s) 7, 190, 1259
CaiI CAGNNNCTG 1 cut(s) 1082
CfoI GCGC 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 203
CpoI CGGWCCG 1 cut(s) 203
CsiI ACCWGGT 2 cut(s) 945, 1489
Csp6I GTAC 2 cut(s) 229, 1274
CspI CGGWCCG 1 cut(s) 203
CviAII CATG 2 cut(s) 235, 940
CviQI GTAC 2 cut(s) 229, 1274
DdeI CTNAG 4 cut(s) 510, 703, 772, 908
DinI GGCGCC 1 cut(s) 210
DpnI GATC 9 cut(s) 73, 116, 263, 408, 450, 528, 622, 865, 1250
DpnII GATC 9 cut(s) 71, 114, 261, 406, 448, 526, 620, 863, 1248
EaeI YGGCCR 2 cut(s) 1195, 1560
Eam1104I CTCTTC 2 cut(s) 39, 281
EarI CTCTTC 2 cut(s) 39, 281
EciI GGCGGA 2 cut(s) 85, 207
Ecl136II GAGCTC 1 cut(s) 276
Eco147I AGGCCT 2 cut(s) 1044, 1387
Eco24I GRGCYC 2 cut(s) 278, 1354
Eco47I GGWCC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 276
Eco57I CTGAAG 2 cut(s) 242, 620
Eco81I CCTNAGG 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 276
EcoRI GAATTC 1 cut(s) 314
EcoRII CCWGG 5 cut(s) 945, 1144, 1165, 1312, 1489
EcoT38I GRGCYC 2 cut(s) 278, 1354
EgeI GGCGCC 1 cut(s) 210
EheI GGCGCC 1 cut(s) 210
FaeI CATG 2 cut(s) 238, 943
FalI AAGNNNNNCTT 4 cut(s) 275, 307, 570, 602
FatI CATG 2 cut(s) 234, 939
FauI CCCGC 3 cut(s) 142, 651, 1266
FbaI TGATCA 2 cut(s) 526, 1248
FokI GGATG 2 cut(s) 356, 1294
FriOI GRGCYC 2 cut(s) 278, 1354
FspBI CTAG 4 cut(s) 363, 743, 1067, 1280
GlaI GCGC 1 cut(s) 210
GsuI CTGGAG 3 cut(s) 294, 844, 909
HaeII RGCGCY 1 cut(s) 212
HaeIII GGCC 5 cut(s) 1044, 1197, 1387, 1409, 1562
HapII CCGG 2 cut(s) 13, 206
HhaI GCGC 1 cut(s) 211
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 2 cut(s) 238, 943
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HindIII AAGCTT 2 cut(s) 22, 632
HinfI GANTC 7 cut(s) 140, 154, 245, 325, 758, 1109, 1337
HpaII CCGG 2 cut(s) 13, 206
Hpy166II GTNNAC 3 cut(s) 241, 829, 1025
Hpy188III TCNNGA 8 cut(s) 301, 311, 410, 530, 545, 861, 1119, 1289
Hpy8I GTNNAC 3 cut(s) 241, 829, 1025
Hpy99I CGWCG 2 cut(s) 256, 299
HpyAV CCTTC 5 cut(s) 76, 223, 1034, 1185, 1364
HpyCH4III ACNGT 4 cut(s) 503, 1273, 1421, 1473
HpyCH4IV ACGT 2 cut(s) 227, 955
HpyCH4V TGCA 7 cut(s) 165, 584, 1025, 1097, 1162, 1299, 1580
HpyF10VI GCNNNNNNNGC 5 cut(s) 198, 590, 1171, 1568, 1577
HpyF3I CTNAG 4 cut(s) 510, 703, 772, 908
HpySE526I ACGT 2 cut(s) 227, 955
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 2 cut(s) 238, 943
HspAI GCGC 1 cut(s) 209
KasI GGCGCC 1 cut(s) 208
KpnI GGTACC 1 cut(s) 1277
Ksp22I TGATCA 2 cut(s) 526, 1248
Kzo9I GATC 9 cut(s) 71, 114, 261, 406, 448, 526, 620, 863, 1248
LguI GCTCTTC 1 cut(s) 281
LmnI GCTCC 5 cut(s) 273, 281, 336, 673, 863
Lsp1109I GCAGC 7 cut(s) 172, 551, 568, 625, 628, 688, 1174
LweI GCATC 2 cut(s) 466, 793
MabI ACCWGGT 2 cut(s) 945, 1489
MaeI CTAG 4 cut(s) 363, 743, 1067, 1280
MaeII ACGT 2 cut(s) 227, 955
MaeIII GTNAC 3 cut(s) 100, 1116, 1208
MalI GATC 9 cut(s) 73, 116, 263, 408, 450, 528, 622, 865, 1250
MboI GATC 9 cut(s) 71, 114, 261, 406, 448, 526, 620, 863, 1248
MflI RGATCY 1 cut(s) 114
MhlI GDGCHC 3 cut(s) 278, 1027, 1354
MlsI TGGCCA 2 cut(s) 1197, 1562
MluCI AATT 7 cut(s) 314, 437, 688, 753, 877, 917, 1522
MluNI TGGCCA 2 cut(s) 1197, 1562
Mly113I GGCGCC 1 cut(s) 209
MlyI GAGTC 2 cut(s) 148, 239
MmeI TCCRAC 4 cut(s) 154, 303, 621, 1117
MnlI CCTC 9 cut(s) 62, 93, 188, 190, 318, 519, 583, 597, 1399
Mox20I TGGCCA 2 cut(s) 1197, 1562
MroXI GAANNNNTTC 3 cut(s) 33, 290, 633
MscI TGGCCA 2 cut(s) 1197, 1562
MseI TTAA 2 cut(s) 465, 1214
Msp20I TGGCCA 2 cut(s) 1197, 1562
MspA1I CMGCKG 3 cut(s) 658, 679, 929
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 2 cut(s) 13, 206
MspR9I CCNGG 6 cut(s) 14, 947, 1146, 1167, 1314, 1491
Mva1269I GAATGC 3 cut(s) 1097, 1261, 1327
MvaI CCWGG 5 cut(s) 947, 1146, 1167, 1314, 1491
MwoI GCNNNNNNNGC 5 cut(s) 198, 590, 1171, 1568, 1577
NarI GGCGCC 1 cut(s) 209
NciI CCSGG 1 cut(s) 14
NdeII GATC 9 cut(s) 71, 114, 261, 406, 448, 526, 620, 863, 1248
NlaIII CATG 2 cut(s) 238, 943
NlaIV GGNNCC 6 cut(s) 116, 178, 210, 305, 608, 1275
NmeAIII GCCGAG 1 cut(s) 227
NmuCI GTSAC 2 cut(s) 1116, 1208
NspV TTCGAA 2 cut(s) 27, 397
PceI AGGCCT 2 cut(s) 1044, 1387
PciSI GCTCTTC 1 cut(s) 281
PctI GAATGC 3 cut(s) 1097, 1261, 1327
PdmI GAANNNNTTC 3 cut(s) 33, 290, 633
PfeI GAWTC 5 cut(s) 140, 325, 758, 1109, 1337
Pfl23II CGTACG 1 cut(s) 228
PflMI CCANNNNNTGG 1 cut(s) 1136
PleI GAGTC 2 cut(s) 148, 239
PluTI GGCGCC 1 cut(s) 212
PpsI GAGTC 2 cut(s) 148, 239
Ppu21I YACGTR 1 cut(s) 956
Psp124BI GAGCTC 1 cut(s) 278
Psp6I CCWGG 5 cut(s) 945, 1144, 1165, 1312, 1489
PspGI CCWGG 5 cut(s) 945, 1144, 1165, 1312, 1489
PspLI CGTACG 1 cut(s) 228
PspN4I GGNNCC 6 cut(s) 116, 178, 210, 305, 608, 1275
PspPI GGNCC 1 cut(s) 203
PstNI CAGNNNCTG 1 cut(s) 1082
PsuI RGATCY 1 cut(s) 114
PvuII CAGCTG 1 cut(s) 929
RsaI GTAC 2 cut(s) 230, 1275
RsaNI GTAC 2 cut(s) 229, 1274
Rsr2I CGGWCCG 1 cut(s) 203
RsrII CGGWCCG 1 cut(s) 203
SacI GAGCTC 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 2 cut(s) 465, 1214
Sau3AI GATC 9 cut(s) 71, 114, 261, 406, 448, 526, 620, 863, 1248
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 2 cut(s) 148, 239
ScrFI CCNGG 6 cut(s) 14, 947, 1146, 1167, 1314, 1491
SduI GDGCHC 3 cut(s) 278, 1027, 1354
SexAI ACCWGGT 2 cut(s) 945, 1489
SfaNI GCATC 2 cut(s) 466, 793
SfoI GGCGCC 1 cut(s) 210
SfuI TTCGAA 2 cut(s) 27, 397
SinI GGWCC 1 cut(s) 203
SmlI CTYRAG 2 cut(s) 464, 587
SmoI CTYRAG 2 cut(s) 464, 587
Sse9I AATT 7 cut(s) 314, 437, 688, 753, 877, 917, 1522
SseBI AGGCCT 2 cut(s) 1044, 1387
SsiI CCGC 9 cut(s) 96, 135, 192, 198, 201, 658, 679, 806, 1259
SspDI GGCGCC 1 cut(s) 208
SspI AATATT 2 cut(s) 472, 598
SspMI CTAG 4 cut(s) 363, 743, 1067, 1280
SstI GAGCTC 1 cut(s) 278
StuI AGGCCT 2 cut(s) 1044, 1387
StyD4I CCNGG 6 cut(s) 12, 945, 1144, 1165, 1312, 1489
TaaI ACNGT 4 cut(s) 503, 1273, 1421, 1473
TaiI ACGT 2 cut(s) 230, 958
TaqI TCGA 3 cut(s) 27, 397, 602
TasI AATT 7 cut(s) 314, 437, 688, 753, 877, 917, 1522
TauI GCSGC 2 cut(s) 201, 682
TfiI GAWTC 5 cut(s) 140, 325, 758, 1109, 1337
Tru1I TTAA 2 cut(s) 465, 1214
Tru9I TTAA 2 cut(s) 465, 1214
TseFI GTSAC 2 cut(s) 1116, 1208
TseI GCWGC 8 cut(s) 9, 185, 539, 581, 613, 616, 676, 1162
Tsp45I GTSAC 2 cut(s) 1116, 1208
TspGWI ACGGA 5 cut(s) 189, 269, 362, 405, 1527
Van91I CCANNNNNTGG 1 cut(s) 1136
Vha464I CTTAAG 1 cut(s) 464
VneI GTGCAC 1 cut(s) 1023
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 4 cut(s) 314, 437, 688, 877
XmnI GAANNNNTTC 3 cut(s) 33, 290, 633
XspI CTAG 4 cut(s) 363, 743, 1067, 1280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.