Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0013239

Physical Location & Seq

Genomic Coordinates Forward (+)

45036555 .. 45040441

Gene Structure 3887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG180300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGTTGATCAGGAAAGAGCAGCTCTTGATGATGAAATAGAGAAGCTATCAAATGAAAAAGCTGCACTTGAGGCAAATATTTCAAGGTTCCAGCAGCAGCGATCTGCTGAAAAGCTTCAGTTGGAAGACCTGACACAGCGGGTAAATGGTATGGAGCAGCGGCAGAATAATTTACTAACATTCTTAGATAAAGCTGTTCAGAACCCTGCCTTTGTTGAACATCTAGCCCGAAAAATTGAATCTATGGATTTCTCAGCATATAACAAGAAAAGGCGTCTGCCTGATGCGGACCACTCACAGCTAGTTGTGGACAATAGTTTTGTGGATAACCAAAGTAGCTCCAGATCGGAGTTTGGAAATTTTTTCCACCAAGACTTTTCAAATAAGCTGAGACTGGAATTATCTCCGGCTGTTTCAGACATGAACCTGGTTTCACGTAGCACCCAGAGTTCCAATGAAGATGGGGATAGTTCAAGTAGGAAAATATCGGAAGAACTGAAAGGTGCACAGATGAGAACAGAAGGTCTTTTATTTGCGAATGAACCACTAGAACTTTCAGATACTGGAACATCTTTTGCATTCAAAATGGATTCGTTATCACGAAAAGCACCAAATGTTGGAAGCCCTGGACTTCATTCCTTGCAGCCAGGTTTGCCTTCTAATGAAGATAGTGATGGCCAGATAACCTGTCACTTAAATCTCACACTATCATCTTCTCCCTTGAAAGTGATCAGTAGCCCGCATTCAGCTACGGTACCCCTAGTAGGTCAGGACATTTGCAACTCCCCATCCCCAGGTTTGAATGCCACTAACAAAGAATCAGATATAAGAGCCCTTCCACAGAAAAATCTGGCTGATGAAGACAGGCCTAAAAGTTCCCAAAAAGAGGCCACAAAACACAGTAAAGGGCATATATCTGTTCCAGTTAGAGTAAATGATGTTTTCTGGGAACAGTTCCTAACGGAAAGACCTGGTTGTTCAGAGAATGAAGAAGCAAGTTCTAATTTTAGAGAAAATCCGTATGATGAGCAAGATGGAATGGCCAGAAATGCTAAAGGTGCAGAAACACTTACTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

359

Amino Acids

39.79

Weight (kDa)

5.08

Isoelectric Point (pI)

60.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13980
fragaria_vesca	FvH4_4g13230
malus_domestica	MD00G1118600.v1.1 MD04G1017400.v1.1
prunus_persica	Prupe.1G165500_v2.0.a1
pyrus_communis	pycom04g01380 pycom420g00940
rosa_chinensis	RchiOBHm_Chr4g0413481
rosa_laevigata	RLG00000008216
rosa_multiflora	Rmu_sc0000883.1_g000011
rosa_roxburghii	Rroxscaffold_5G00357380
rosa_rugosa	Rorug04G0120600
rosa_samantha	Rh4AG180300 Rh4BG179600 Rh4CG191300 Rh4DG175500
rosa_wichuraiana	Rw4G015010 Rw4G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	754
AccB1I	GGYRCC	1 cut(s)	754
AccB7I	CCANNNNNTGG	1 cut(s)	617
AciI	CCGC	4 cut(s)	139, 160, 287, 740
AcoI	YGGCCR	2 cut(s)	676, 1041
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	274
AfaI	GTAC	1 cut(s)	756
AfiI	CCNNNNNNNGG	4 cut(s)	617, 764, 794, 886
AgsI	TTSAA	8 cut(s)	84, 218, 239, 381, 474, 583, 724, 802
AjnI	CCWGG	5 cut(s)	426, 625, 646, 793, 970
AluBI	AGCT	9 cut(s)	23, 46, 62, 115, 194, 301, 339, 388, 749
AluI	AGCT	9 cut(s)	23, 46, 62, 115, 194, 301, 339, 388, 749
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	1 cut(s)	385
Alw44I	GTGCAC	1 cut(s)	504
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	4 cut(s)	676, 866, 888, 1041
ApaLI	GTGCAC	1 cut(s)	504
ApeKI	GCWGC	6 cut(s)	20, 62, 94, 97, 157, 643
ApoI	RAATTY	1 cut(s)	358
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
Asp700I	GAANNNNTTC	1 cut(s)	114
Asp718I	GGTACC	1 cut(s)	754
AspS9I	GGNCC	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	289
BaeGI	GKGCMC	1 cut(s)	508
BalI	TGGCCA	2 cut(s)	678, 1043
BanI	GGYRCC	1 cut(s)	754
BanII	GRGCYC	1 cut(s)	835
BbsI	GAAGAC	2 cut(s)	132, 867
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	6 cut(s)	32, 49, 106, 109, 169, 655
BccI	CCATC	4 cut(s)	455, 668, 796, 1028
BciT130I	CCWGG	5 cut(s)	428, 627, 648, 795, 972
BclI	TGATCA	2 cut(s)	7, 729
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	4 cut(s)	224, 302, 548, 761
BisI	GCNGC	7 cut(s)	21, 63, 95, 98, 158, 161, 644
BlsI	GCNGC	7 cut(s)	22, 64, 96, 99, 159, 162, 645
Bme1390I	CCNGG	5 cut(s)	428, 627, 648, 795, 972
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	2 cut(s)	89, 756
BmrFI	CCNGG	5 cut(s)	428, 627, 648, 795, 972
BmsI	GCATC	1 cut(s)	274
BpiI	GAAGAC	2 cut(s)	132, 867
BpmI	CTGGAG	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	625, 793
Bsc4I	CCNNNNNNNGG	4 cut(s)	617, 764, 794, 886
Bse1I	ACTGG	3 cut(s)	399, 568, 923
BseBI	CCWGG	5 cut(s)	428, 627, 648, 795, 972
BseDI	CCNNGG	2 cut(s)	625, 793
BseGI	GGATG	1 cut(s)	788
BseLI	CCNNNNNNNGG	4 cut(s)	617, 764, 794, 886
BseMII	CTCAG	2 cut(s)	267, 380
BseNI	ACTGG	3 cut(s)	399, 568, 923
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	6 cut(s)	32, 49, 106, 109, 169, 655
BsgI	GTGCAG	2 cut(s)	48, 1080
BshFI	GGCC	4 cut(s)	678, 868, 890, 1043
BshNI	GGYRCC	1 cut(s)	754
BsiHKAI	GWGCWC	1 cut(s)	508
BsiSI	CCGG	1 cut(s)	407
BslI	CCNNNNNNNGG	4 cut(s)	617, 764, 794, 886
BsmAI	GTCTC	1 cut(s)	385
BsmI	GAATGC	3 cut(s)	578, 742, 808
BsnI	GGCC	4 cut(s)	678, 868, 890, 1043
Bsp1286I	GDGCHC	2 cut(s)	508, 835
Bsp143I	GATC	4 cut(s)	7, 101, 344, 729
BspACI	CCGC	4 cut(s)	139, 160, 287, 740
BspANI	GGCC	4 cut(s)	678, 868, 890, 1043
BspCNI	CTCAG	2 cut(s)	266, 381
BspLI	GGNNCC	2 cut(s)	89, 756
BspT107I	GGYRCC	1 cut(s)	754
BsrI	ACTGG	3 cut(s)	399, 568, 923
BssECI	CCNNGG	2 cut(s)	625, 793
BssMI	GATC	4 cut(s)	7, 101, 344, 729
BssNI	GRCGYC	1 cut(s)	274
Bst2UI	CCWGG	5 cut(s)	428, 627, 648, 795, 972
Bst4CI	ACNGT	3 cut(s)	754, 902, 954
BstACI	GRCGYC	1 cut(s)	274
BstBAI	YACGTR	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	740
BstDEI	CTNAG	3 cut(s)	184, 253, 389
BstF5I	GGATG	1 cut(s)	788
BstKTI	GATC	4 cut(s)	10, 104, 347, 732
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	4 cut(s)	7, 101, 344, 729
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 652, 1049, 1058
BstNI	CCWGG	5 cut(s)	428, 627, 648, 795, 972
BstSCI	CCNGG	5 cut(s)	426, 625, 646, 793, 970
BstSLI	GKGCMC	1 cut(s)	508
BstV1I	GCAGC	6 cut(s)	32, 49, 106, 109, 169, 655
BstV2I	GAAGAC	2 cut(s)	132, 867
BsuRI	GGCC	4 cut(s)	678, 868, 890, 1043
BtsCI	GGATG	1 cut(s)	788
Cac8I	GCNNGC	1 cut(s)	740
CaiI	CAGNNNCTG	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	289
CseI	GACGC	1 cut(s)	263
CsiI	ACCWGGT	2 cut(s)	426, 970
Csp6I	GTAC	1 cut(s)	755
CviAII	CATG	1 cut(s)	421
CviQI	GTAC	1 cut(s)	755
DdeI	CTNAG	3 cut(s)	184, 253, 389
DpnI	GATC	4 cut(s)	9, 103, 346, 731
DpnII	GATC	4 cut(s)	7, 101, 344, 729
EaeI	YGGCCR	2 cut(s)	676, 1041
Eco147I	AGGCCT	1 cut(s)	868
Eco24I	GRGCYC	1 cut(s)	835
Eco47I	GGWCC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	101
EcoRII	CCWGG	5 cut(s)	426, 625, 646, 793, 970
EcoT38I	GRGCYC	1 cut(s)	835
FaeI	CATG	1 cut(s)	424
FaiI	YATR	9 cut(s)	152, 245, 259, 261, 422, 827, 912, 914, 1023
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FatI	CATG	1 cut(s)	420
FauI	CCCGC	2 cut(s)	132, 747
FbaI	TGATCA	2 cut(s)	7, 729
Fnu4HI	GCNGC	7 cut(s)	21, 63, 95, 98, 158, 161, 644
FokI	GGATG	1 cut(s)	775
FriOI	GRGCYC	1 cut(s)	835
Fsp4HI	GCNGC	7 cut(s)	21, 63, 95, 98, 158, 161, 644
FspBI	CTAG	4 cut(s)	224, 302, 548, 761
GluI	GCNGC	7 cut(s)	21, 63, 95, 98, 158, 161, 644
GsuI	CTGGAG	1 cut(s)	325
HaeIII	GGCC	4 cut(s)	678, 868, 890, 1043
HapII	CCGG	1 cut(s)	407
HgaI	GACGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	274
Hin1II	CATG	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	3 cut(s)	239, 590, 818
HpaII	CCGG	1 cut(s)	407
Hpy166II	GTNNAC	2 cut(s)	310, 506
Hpy188I	TCNGA	7 cut(s)	201, 349, 418, 490, 559, 823, 982
Hpy188III	TCNNGA	5 cut(s)	11, 26, 342, 600, 770
Hpy8I	GTNNAC	2 cut(s)	310, 506
HpyAV	CCTTC	3 cut(s)	515, 666, 845
HpyCH4III	ACNGT	3 cut(s)	754, 902, 954
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	6 cut(s)	65, 506, 578, 643, 780, 1061
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 652, 1049, 1058
HpyF3I	CTNAG	3 cut(s)	184, 253, 389
HpySE526I	ACGT	1 cut(s)	436
Hsp92I	GRCGYC	1 cut(s)	274
Hsp92II	CATG	1 cut(s)	424
KpnI	GGTACC	1 cut(s)	758
Ksp22I	TGATCA	2 cut(s)	7, 729
Kzo9I	GATC	4 cut(s)	7, 101, 344, 729
LmnI	GCTCC	2 cut(s)	154, 344
Lsp1109I	GCAGC	6 cut(s)	32, 49, 106, 109, 169, 655
LweI	GCATC	1 cut(s)	274
MabI	ACCWGGT	2 cut(s)	426, 970
MaeI	CTAG	4 cut(s)	224, 302, 548, 761
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	4 cut(s)	9, 103, 346, 731
MboI	GATC	4 cut(s)	7, 101, 344, 729
MboII	GAAGA	7 cut(s)	137, 470, 503, 677, 705, 872, 1001
MhlI	GDGCHC	2 cut(s)	508, 835
MlsI	TGGCCA	2 cut(s)	678, 1043
MluCI	AATT	5 cut(s)	169, 234, 358, 398, 1003
MluNI	TGGCCA	2 cut(s)	678, 1043
MmeI	TCCRAC	2 cut(s)	102, 598
MnlI	CCTC	2 cut(s)	64, 880
Mox20I	TGGCCA	2 cut(s)	678, 1043
MroXI	GAANNNNTTC	1 cut(s)	114
MscI	TGGCCA	2 cut(s)	678, 1043
MseI	TTAA	1 cut(s)	695
Msp20I	TGGCCA	2 cut(s)	678, 1043
MspA1I	CMGCKG	2 cut(s)	139, 160
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	5 cut(s)	428, 627, 648, 795, 972
Mva1269I	GAATGC	3 cut(s)	578, 742, 808
MvaI	CCWGG	5 cut(s)	428, 627, 648, 795, 972
MwoI	GCNNNNNNNGC	4 cut(s)	71, 652, 1049, 1058
NdeII	GATC	4 cut(s)	7, 101, 344, 729
NlaIII	CATG	1 cut(s)	424
NlaIV	GGNNCC	2 cut(s)	89, 756
NmuCI	GTSAC	1 cut(s)	689
PceI	AGGCCT	1 cut(s)	868
PctI	GAATGC	3 cut(s)	578, 742, 808
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	3 cut(s)	239, 590, 818
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	7 cut(s)	22, 64, 96, 99, 159, 162, 645
Ppu21I	YACGTR	1 cut(s)	437
Psp6I	CCWGG	5 cut(s)	426, 625, 646, 793, 970
PspGI	CCWGG	5 cut(s)	426, 625, 646, 793, 970
PspN4I	GGNNCC	2 cut(s)	89, 756
PspPI	GGNCC	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	563
RsaI	GTAC	1 cut(s)	756
RsaNI	GTAC	1 cut(s)	755
SaqAI	TTAA	1 cut(s)	695
SatI	GCNGC	7 cut(s)	21, 63, 95, 98, 158, 161, 644
Sau3AI	GATC	4 cut(s)	7, 101, 344, 729
Sau96I	GGNCC	1 cut(s)	289
ScrFI	CCNGG	5 cut(s)	428, 627, 648, 795, 972
SduI	GDGCHC	2 cut(s)	508, 835
SexAI	ACCWGGT	2 cut(s)	426, 970
SfaNI	GCATC	1 cut(s)	274
SinI	GGWCC	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	5 cut(s)	169, 234, 358, 398, 1003
SseBI	AGGCCT	1 cut(s)	868
SsiI	CCGC	4 cut(s)	139, 160, 287, 740
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	4 cut(s)	224, 302, 548, 761
StuI	AGGCCT	1 cut(s)	868
StyD4I	CCNGG	5 cut(s)	426, 625, 646, 793, 970
TaaI	ACNGT	3 cut(s)	754, 902, 954
TaiI	ACGT	1 cut(s)	439
TasI	AATT	5 cut(s)	169, 234, 358, 398, 1003
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	3 cut(s)	239, 590, 818
Tru1I	TTAA	1 cut(s)	695
Tru9I	TTAA	1 cut(s)	695
TseFI	GTSAC	1 cut(s)	689
TseI	GCWGC	6 cut(s)	20, 62, 94, 97, 157, 643
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	9 cut(s)	48, 69, 437, 471, 555, 623, 678, 873, 1002
TspGWI	ACGGA	2 cut(s)	977, 1008
Van91I	CCANNNNNTGG	1 cut(s)	617
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	4 cut(s)	224, 302, 548, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.