Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010276

Physical Location & Seq

Genomic Coordinates Reverse (-)

8132880 .. 8134988

Gene Structure 2109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGATCTTTCGCCTGTTAAGGAAGCTTTGGCCGCCAAATCCTTTGACAAAATCGCCGATATCTGCGATACTCTCATGCTTCAGGTTGCTTCCGAAGGAATTGAATATCATGATGATTGGCCTTACGCAATCCATCTTCTGGGTTACTTTTACGTTGACGATTGTGATAGCGCACGTTTCCTCTGGAAAAGGATACCTACAGCTATCAAGGAGAGGAAGCCTGAAGTTGTTGCAGCTTGGGGGATTGGTCAGAAGCTGTGGACACACGACTATGCAGGTGTATATGAAGCTATTCGGGGTTATGATTGGAGTCAAGAAGCTAAAGATATGGTTGCTGCCTTCTCAGATCTTTACACAAAAAGGATGTTTCAGCTTTTGTTGTCTGCCTACTCCACAATTACCATCCATGATTTAGCTCTTTTCCTAGGGATGACGGAGGATGATGCCACAACTTATGTTGTAGAGAATGGATGGACAGTGGATGCAGCTTCTCAAATGGCGAGTGTGAAGAAACAAGCTGTTAAAAGAGAGCAAAAGGTGGATTCATCGAAGCTACAACGCTTGACGGAGTATGTGTTCCACCTTGAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0001101 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010387 GO:0016043 GO:0016787 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0065003 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSN8_PSD8_EIF3K

Protein Analysis

197

Amino Acids

22.55

Weight (kDa)

5.1

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN8_PSD8_EIF3K	PF10075	37 - 176	1.7e-41	CSN8/PSMD8/EIF3K family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14110
fragaria_vesca	FvH4_5g29770
malus_domestica	MD08G1227500.v1.1 MD15G1419900.v1.1
prunus_persica	Prupe.1G186200_v2.0.a1 Prupe.1G186200_v2.0.a1 Prupe.1G564800_v2.0.a1
pyrus_communis	pycom08g19850 pycom15g37270
rosa_chinensis	RchiOBHm_Chr7g0223291
rosa_laevigata	RLG00000001990
rosa_multiflora	Rmu_sc0005124.1_g000011 Rmu_sc0013144.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235950
rosa_rugosa	Rorug07G0215800
rosa_samantha	Rh7BG347400 Rh7BG349000 Rh7CG378000 Rh7DG354900
rosa_wichuraiana	Rw0G009420 Rw7G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	266
AccB7I	CCANNNNNTGG	1 cut(s)	139
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	2 cut(s)	65, 243
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	2 cut(s)	104, 587
AloI	GAACNNNNNNTCC	2 cut(s)	560, 592
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	256
AoxI	GGCC	2 cut(s)	30, 119
ApeKI	GCWGC	3 cut(s)	233, 335, 485
Asp700I	GAANNNNTTC	1 cut(s)	291
AspA2I	CCTAGG	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	173
AvrII	CCTAGG	1 cut(s)	424
BbvI	GCAGC	3 cut(s)	245, 322, 497
BccI	CCATC	3 cut(s)	141, 410, 465
BciVI	GTATCC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	186
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	4 cut(s)	33, 234, 336, 486
BlnI	CCTAGG	1 cut(s)	424
BlsI	GCNGC	4 cut(s)	34, 235, 337, 487
BmsI	GCATC	2 cut(s)	433, 472
BsaJI	CCNNGG	1 cut(s)	424
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	6 cut(s)	369, 402, 435, 445, 476, 487
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	357
BseXI	GCAGC	3 cut(s)	245, 322, 497
BshFI	GGCC	2 cut(s)	32, 121
BslI	CCNNNNNNNGG	1 cut(s)	139
BsnI	GGCC	2 cut(s)	32, 121
Bsp143I	GATC	2 cut(s)	4, 346
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	2 cut(s)	32, 121
BspCNI	CTCAG	1 cut(s)	356
BspHI	TCATGA	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	2 cut(s)	4, 346
BssT1I	CCWWGG	1 cut(s)	424
Bst4CI	ACNGT	1 cut(s)	478
BstDEI	CTNAG	1 cut(s)	343
BstF5I	GGATG	6 cut(s)	369, 402, 435, 445, 476, 487
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	2 cut(s)	7, 349
BstMBI	GATC	2 cut(s)	4, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	245, 322, 497
BstX2I	RGATCY	2 cut(s)	4, 346
BstYI	RGATCY	2 cut(s)	4, 346
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	32, 121
BtsCI	GGATG	6 cut(s)	369, 402, 435, 445, 476, 487
BtsIMutI	CAGTG	1 cut(s)	483
BveI	ACCTGC	1 cut(s)	266
CaiI	CAGNNNCTG	1 cut(s)	256
CciI	TCATGA	1 cut(s)	109
CfoI	GCGC	1 cut(s)	173
CviAII	CATG	3 cut(s)	76, 110, 407
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	2 cut(s)	6, 348
DpnII	GATC	2 cut(s)	4, 346
EaeI	YGGCCR	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	424
Eco32I	GATATC	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	65, 243
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	3 cut(s)	79, 113, 410
FatI	CATG	3 cut(s)	75, 109, 406
Fnu4HI	GCNGC	4 cut(s)	33, 234, 336, 486
FokI	GGATG	6 cut(s)	376, 389, 442, 452, 483, 494
Fsp4HI	GCNGC	4 cut(s)	33, 234, 336, 486
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	4 cut(s)	33, 234, 336, 486
HaeIII	GGCC	2 cut(s)	32, 121
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	3 cut(s)	79, 113, 410
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	24
HinfI	GANTC	2 cut(s)	310, 542
Hpy166II	GTNNAC	2 cut(s)	157, 261
Hpy188I	TCNGA	3 cut(s)	94, 252, 346
Hpy188III	TCNNGA	3 cut(s)	110, 184, 314
Hpy8I	GTNNAC	2 cut(s)	157, 261
HpyAV	CCTTC	2 cut(s)	89, 349
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	2 cut(s)	153, 175
HpyCH4V	TGCA	3 cut(s)	233, 275, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	343
HpySE526I	ACGT	2 cut(s)	153, 175
Hsp92II	CATG	3 cut(s)	79, 113, 410
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	4, 346
LpnPI	CCDG	6 cut(s)	27, 68, 125, 169, 234, 261
Lsp1109I	GCAGC	3 cut(s)	245, 322, 497
LweI	GCATC	2 cut(s)	433, 472
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	2 cut(s)	153, 175
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	2 cut(s)	6, 348
MboI	GATC	2 cut(s)	4, 346
MboII	GAAGA	2 cut(s)	128, 520
MflI	RGATCY	2 cut(s)	4, 346
MluCI	AATT	2 cut(s)	99, 396
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	3 cut(s)	191, 207, 430
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	3 cut(s)	18, 522, 592
MslI	CAYNNNNRTG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	2 cut(s)	4, 346
NlaIII	CATG	3 cut(s)	79, 113, 410
PagI	TCATGA	1 cut(s)	109
PaqCI	CACCTGC	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	542
PflMI	CCANNNNNTGG	1 cut(s)	139
PkrI	GCNGC	4 cut(s)	34, 235, 337, 487
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PstNI	CAGNNNCTG	1 cut(s)	256
PsuI	RGATCY	2 cut(s)	4, 346
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	3 cut(s)	18, 522, 592
SatI	GCNGC	4 cut(s)	33, 234, 336, 486
Sau3AI	GATC	2 cut(s)	4, 346
SchI	GAGTC	1 cut(s)	319
SfaNI	GCATC	2 cut(s)	433, 472
SfcI	CTRYAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	2 cut(s)	99, 396
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	425
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	2 cut(s)	156, 178
TaqI	TCGA	1 cut(s)	548
TasI	AATT	2 cut(s)	99, 396
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	3 cut(s)	18, 522, 592
Tru9I	TTAA	3 cut(s)	18, 522, 592
TscAI	CASTG	1 cut(s)	483
TseI	GCWGC	3 cut(s)	233, 335, 485
TspDTI	ATGAA	2 cut(s)	300, 534
TspGWI	ACGGA	2 cut(s)	449, 581
TspRI	CASTG	1 cut(s)	483
Van91I	CCANNNNNTGG	1 cut(s)	139
XmaJI	CCTAGG	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.