Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010276

Physical Location & Seq

Genomic Coordinates Forward (+)

23196506 .. 23201194

Gene Structure 4689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGATTTCTCTCCACTCTCCGAGGCCTTGGCCTCCAAATCGTATGAAAGAATCGCCGATATCTGCGACGAAATCATGCTTCAGGTCGCGGCGGAGGGCGTCTCTTTCCAAGAAGACTGGCCCTACGCCATTCATCTTCTCGGTCACATTTACGCCGGCGATATTAACAGTATGAGGTTTCTTTGGAAGTCGATGCCTTCTGCGGTCAAGGAGAACCAGCAGGAAGTGCAGGCTGCATGGAAAATTGGTCAGAAGCTCTGGGTGCGGGACTATGGGGGCGTGTATGAAGCAATTCTTGGATTTGATTGGAGTCAGGAAGCTCAAGGTCTTGTTGCGGCCTTTTCAGATCTTTACACCAAGAAGATGTTTCAGCTGCTGCAGTCTGCTTATTCGACAATAAGCATCCAAGATACAGCTCTCTTTTTGGGCATGAATGAGGATGATGCCAGAAATTACGTACGACAGCAAGGTTGGATTGTGGACCCTGCTTCACAAATGATTACTGTGAAGAAGCAGCCTATTATTACTGAGCAGAAACTGAATCCCAGTAAATTGCAGAGCTTGACAGAATATGTATTCCATCTAGAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0001101 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010387 GO:0016043 GO:0016787 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0065003 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSN8_PSD8_EIF3K

Protein Analysis

197

Amino Acids

22.49

Weight (kDa)

4.86

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN8_PSD8_EIF3K	PF10075	39 - 175	1.8e-35	CSN8/PSMD8/EIF3K family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14110
fragaria_vesca	FvH4_5g29770
malus_domestica	MD08G1227500.v1.1 MD15G1419900.v1.1
prunus_persica	Prupe.1G186200_v2.0.a1 Prupe.1G186200_v2.0.a1 Prupe.1G564800_v2.0.a1
pyrus_communis	pycom08g19850 pycom15g37270
rosa_chinensis	RchiOBHm_Chr7g0223291
rosa_laevigata	RLG00000001990
rosa_multiflora	Rmu_sc0005124.1_g000011 Rmu_sc0013144.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235950
rosa_rugosa	Rorug07G0215800
rosa_samantha	Rh7BG347400 Rh7BG349000 Rh7CG378000 Rh7DG354900
rosa_wichuraiana	Rw0G009420 Rw7G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	89
AciI	CCGC	5 cut(s)	89, 92, 203, 265, 335
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	459
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	5 cut(s)	256, 320, 373, 416, 561
AluI	AGCT	5 cut(s)	256, 320, 373, 416, 561
Alw26I	GTCTC	1 cut(s)	106
AlwNI	CAGNNNCTG	2 cut(s)	376, 538
AoxI	GGCC	4 cut(s)	24, 30, 119, 336
ApeKI	GCWGC	4 cut(s)	233, 373, 376, 514
Asp700I	GAANNNNTTC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	120, 481
AvaII	GGWCC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	120
BbvI	GCAGC	4 cut(s)	220, 360, 363, 526
BccI	CCATC	1 cut(s)	588
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	584
BfmI	CTRYAG	1 cut(s)	377
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	6 cut(s)	90, 234, 336, 374, 377, 515
BlsI	GCNGC	6 cut(s)	91, 235, 337, 375, 378, 516
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	2 cut(s)	120, 481
BmiI	GGNNCC	1 cut(s)	483
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	3 cut(s)	183, 411, 433
BmuI	ACTGGG	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	120
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BpuEI	CTTGAG	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	457
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	21, 27
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	122, 546
BseDI	CCNNGG	2 cut(s)	21, 27
BseGI	GGATG	2 cut(s)	402, 445
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	2 cut(s)	122, 546
BseXI	GCAGC	4 cut(s)	220, 360, 363, 526
BsgI	GTGCAG	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	4 cut(s)	26, 32, 121, 338
BsiSI	CCGG	1 cut(s)	156
BsiWI	CGTACG	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	106
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	4 cut(s)	26, 32, 121, 338
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	5 cut(s)	89, 92, 203, 265, 335
BspANI	GGCC	4 cut(s)	26, 32, 121, 338
BspCNI	CTCAG	1 cut(s)	520
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	483
BspMAI	CTGCAG	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	122, 546
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	21, 27
BssMI	GATC	1 cut(s)	346
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	170, 505
BstACI	GRCGYC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	157, 231
BstDEI	CTNAG	1 cut(s)	528
BstF5I	GGATG	2 cut(s)	402, 445
BstFNI	CGCG	1 cut(s)	89
BstKTI	GATC	1 cut(s)	349
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 262
BstSFI	CTRYAG	1 cut(s)	377
BstSNI	TACGTA	1 cut(s)	457
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	4 cut(s)	220, 360, 363, 526
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	4 cut(s)	26, 32, 121, 338
BtsCI	GGATG	2 cut(s)	402, 445
Cac8I	GCNNGC	2 cut(s)	157, 231
CaiI	CAGNNNCTG	2 cut(s)	376, 538
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	120, 481
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	3 cut(s)	76, 237, 430
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
EciI	GGCGGA	1 cut(s)	107
Eco105I	TACGTA	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	26
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	65
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	3 cut(s)	79, 240, 433
FaiI	YATR	8 cut(s)	45, 77, 173, 238, 273, 285, 431, 573
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	75, 236, 429
FauI	CCCGC	1 cut(s)	258
Fnu4HI	GCNGC	6 cut(s)	90, 234, 336, 374, 377, 515
FokI	GGATG	2 cut(s)	389, 452
Fsp4HI	GCNGC	6 cut(s)	90, 234, 336, 374, 377, 515
FspBI	CTAG	1 cut(s)	584
GluI	GCNGC	6 cut(s)	90, 234, 336, 374, 377, 515
HaeIII	GGCC	4 cut(s)	26, 32, 121, 338
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	79, 240, 433
HinfI	GANTC	3 cut(s)	51, 310, 541
HpaII	CCGG	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	3 cut(s)	22, 252, 346
Hpy188III	TCNNGA	2 cut(s)	314, 584
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	2 cut(s)	170, 505
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	4 cut(s)	229, 236, 379, 556
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 262
HpyF3I	CTNAG	1 cut(s)	528
HpySE526I	ACGT	1 cut(s)	456
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	79, 240, 433
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	346
Lsp1109I	GCAGC	4 cut(s)	220, 360, 363, 526
LweI	GCATC	3 cut(s)	183, 411, 433
MaeI	CTAG	1 cut(s)	584
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	4 cut(s)	125, 128, 373, 520
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	4 cut(s)	243, 291, 451, 551
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	5 cut(s)	16, 43, 88, 168, 430
MreI	CGCCGGCG	1 cut(s)	155
MroNI	GCCGGC	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	2 cut(s)	165, 592
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	226, 262
NaeI	GCCGGC	1 cut(s)	157
NdeII	GATC	1 cut(s)	346
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	3 cut(s)	79, 240, 433
NlaIV	GGNNCC	1 cut(s)	483
NmuCI	GTSAC	1 cut(s)	143
PceI	AGGCCT	1 cut(s)	26
PdiI	GCCGGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	51, 541
Pfl23II	CGTACG	1 cut(s)	457
PkrI	GCNGC	6 cut(s)	91, 235, 337, 375, 378, 516
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
Ppu21I	YACGTR	1 cut(s)	457
PspLI	CGTACG	1 cut(s)	457
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	2 cut(s)	120, 481
PstI	CTGCAG	1 cut(s)	381
PstNI	CAGNNNCTG	2 cut(s)	376, 538
PsuI	RGATCY	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	165, 592
SatI	GCNGC	6 cut(s)	90, 234, 336, 374, 377, 515
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	2 cut(s)	120, 481
SchI	GAGTC	1 cut(s)	319
SfaNI	GCATC	3 cut(s)	183, 411, 433
SfcI	CTRYAG	1 cut(s)	377
SgrAI	CRCCGGYG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
SnaBI	TACGTA	1 cut(s)	457
Sse9I	AATT	4 cut(s)	243, 291, 451, 551
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	5 cut(s)	89, 92, 203, 265, 335
SspMI	CTAG	1 cut(s)	584
StuI	AGGCCT	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	170, 505
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	2 cut(s)	191, 392
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	4 cut(s)	243, 291, 451, 551
TauI	GCSGC	2 cut(s)	92, 338
TfiI	GAWTC	2 cut(s)	51, 541
Tru1I	TTAA	2 cut(s)	165, 592
Tru9I	TTAA	2 cut(s)	165, 592
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	4 cut(s)	233, 373, 376, 514
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	4 cut(s)	60, 122, 300, 446
VpaK11BI	GGWCC	1 cut(s)	481
XbaI	TCTAGA	1 cut(s)	583
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.