Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010276

Physical Location & Seq

Genomic Coordinates Reverse (-)

46119589 .. 46122860

Gene Structure 3272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G564800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGATTTCTCTCTCGTATCAGAGGCCTTGAACTCCAAATCCTATGAAAAGGTCGCCGATATCTGTGACGAACACATGCTTCAGGTCGCAGCCGAGGGCGTTGCTTTTCAGGACGACTGGCCCTACGCCATTCATCTTCTCGGTCACATTTACGCTGGTGATATTAATAGCATGCGGTTTCTTTGGAAATCAATGCCTGCCACAGTCAAAGAGGGTAATCCAGAAGTCATTGCTGCTTGGAAAATTGGCCAGAAATTGTGGGTGCGAGACTATGGGGGTGTGTATGAAGCTATTCGTGGATATGACTGGAGTCAGGAAGCTCAAGGTCTAGTTGCAGCCTTTTCAGATCTTTACACAAAGAATATGTTTCAGCTCCTGCAGTCTGCCTATTCTACAATAAGCATCCAAGATACAGCTCTCTTCCTTGGAATGAGCGAGGATGATGCCACAACTTTTGTACAACAGCAAGGTTGGGCTGTGGACCCTGCTTCTCAAATGCTTACTGTGAAGAAGCAGCCCATTGTTACAGAGCAGAAACTGGATGCCAGAAAATTGCAGAACTTGACAGAATATGTATTCCATCTAGAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0001101 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010387 GO:0016043 GO:0016787 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0065003 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSN8_PSD8_EIF3K

Protein Analysis

198

Amino Acids

22.31

Weight (kDa)

4.76

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14110
fragaria_vesca	FvH4_5g29770
malus_domestica	MD08G1227500.v1.1 MD15G1419900.v1.1
prunus_persica	Prupe.1G186200_v2.0.a1 Prupe.1G186200_v2.0.a1 Prupe.1G564800_v2.0.a1
pyrus_communis	pycom08g19850 pycom15g37270
rosa_chinensis	RchiOBHm_Chr7g0223291
rosa_laevigata	RLG00000001990
rosa_multiflora	Rmu_sc0005124.1_g000011 Rmu_sc0013144.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235950
rosa_rugosa	Rorug07G0215800
rosa_samantha	Rh7BG347400 Rh7BG349000 Rh7CG378000 Rh7DG354900
rosa_wichuraiana	Rw0G009420 Rw7G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	459
AgsI	TTSAA	1 cut(s)	31
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	4 cut(s)	290, 320, 373, 416
AluI	AGCT	4 cut(s)	290, 320, 373, 416
Alw26I	GTCTC	1 cut(s)	261
AlwNI	CAGNNNCTG	2 cut(s)	376, 538
AoxI	GGCC	3 cut(s)	24, 119, 247
ApeKI	GCWGC	4 cut(s)	89, 233, 335, 514
AseI	ATTAAT	1 cut(s)	165
Asp700I	GAANNNNTTC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	120, 481
AsuHPI	GGTGA	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	481
BalI	TGGCCA	1 cut(s)	249
BbvI	GCAGC	4 cut(s)	101, 220, 347, 526
BccI	CCATC	1 cut(s)	588
BcgI	CGANNNNNNTGC	4 cut(s)	83, 117, 425, 459
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	2 cut(s)	329, 584
BfmI	CTRYAG	1 cut(s)	377
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	4 cut(s)	90, 234, 336, 515
BlsI	GCNGC	4 cut(s)	91, 235, 337, 516
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	2 cut(s)	120, 481
BmiI	GGNNCC	1 cut(s)	483
BmsI	GCATC	3 cut(s)	411, 433, 532
BoxI	GACNNNNGTC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	328
BpuEI	CTTGAG	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	93, 424
Bse1I	ACTGG	3 cut(s)	122, 311, 543
Bse3DI	GCAATG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	93, 424
BseGI	GGATG	3 cut(s)	402, 445, 547
BseMI	GCAATG	1 cut(s)	228
BseNI	ACTGG	3 cut(s)	122, 311, 543
BseXI	GCAGC	4 cut(s)	101, 220, 347, 526
BshFI	GGCC	3 cut(s)	26, 121, 249
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	3 cut(s)	26, 121, 249
Bsp1407I	TGTACA	1 cut(s)	457
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	3 cut(s)	26, 121, 249
BspLI	GGNNCC	1 cut(s)	483
BspMAI	CTGCAG	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	457
BsrI	ACTGG	3 cut(s)	122, 311, 543
BssECI	CCNNGG	2 cut(s)	93, 424
BssMI	GATC	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	424
Bst4CI	ACNGT	2 cut(s)	205, 505
Bst6I	CTCTTC	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	173, 198
BstF5I	GGATG	3 cut(s)	402, 445, 547
BstKTI	GATC	1 cut(s)	349
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	346
BstNSI	RCATGY	2 cut(s)	79, 175
BstPAI	GACNNNNGTC	1 cut(s)	309
BstSFI	CTRYAG	1 cut(s)	377
BstV1I	GCAGC	4 cut(s)	101, 220, 347, 526
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	3 cut(s)	26, 121, 249
BtsCI	GGATG	3 cut(s)	402, 445, 547
Cac8I	GCNNGC	2 cut(s)	173, 198
CaiI	CAGNNNCTG	2 cut(s)	376, 538
Cfr13I	GGNCC	2 cut(s)	120, 481
Csp6I	GTAC	1 cut(s)	458
CspCI	CAANNNNNGTGG	2 cut(s)	436, 471
CviAII	CATG	2 cut(s)	76, 172
CviQI	GTAC	1 cut(s)	458
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	424
Eco147I	AGGCCT	1 cut(s)	26
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	65
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	2 cut(s)	79, 175
FaiI	YATR	8 cut(s)	45, 77, 173, 273, 285, 303, 365, 573
FatI	CATG	2 cut(s)	75, 171
Fnu4HI	GCNGC	4 cut(s)	90, 234, 336, 515
FokI	GGATG	3 cut(s)	389, 452, 554
Fsp4HI	GCNGC	4 cut(s)	90, 234, 336, 515
FspBI	CTAG	2 cut(s)	329, 584
GluI	GCNGC	4 cut(s)	90, 234, 336, 515
GsuI	CTGGAG	1 cut(s)	328
HaeIII	GGCC	3 cut(s)	26, 121, 249
Hin1II	CATG	2 cut(s)	79, 175
HinfI	GANTC	1 cut(s)	310
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	2 cut(s)	22, 346
Hpy188III	TCNNGA	4 cut(s)	110, 221, 314, 584
Hpy8I	GTNNAC	1 cut(s)	481
HpyCH4III	ACNGT	2 cut(s)	205, 505
HpyCH4V	TGCA	3 cut(s)	335, 379, 556
Hsp92II	CATG	2 cut(s)	79, 175
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	1 cut(s)	378
Lsp1109I	GCAGC	4 cut(s)	101, 220, 347, 526
LweI	GCATC	3 cut(s)	411, 433, 532
MaeI	CTAG	2 cut(s)	329, 584
MaeIII	GTNAC	3 cut(s)	65, 143, 523
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	3 cut(s)	128, 412, 520
MflI	RGATCY	1 cut(s)	346
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	3 cut(s)	243, 254, 551
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	4 cut(s)	16, 88, 205, 430
Mox20I	TGGCCA	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	1 cut(s)	165
Msp20I	TGGCCA	1 cut(s)	249
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	2 cut(s)	79, 175
NlaIV	GGNNCC	1 cut(s)	483
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	2 cut(s)	65, 143
NspI	RCATGY	2 cut(s)	79, 175
PaeI	GCATGC	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	291
PkrI	GCNGC	4 cut(s)	91, 235, 337, 516
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PshAI	GACNNNNGTC	1 cut(s)	309
PshBI	ATTAAT	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	2 cut(s)	120, 481
PstI	CTGCAG	1 cut(s)	381
PstNI	CAGNNNCTG	2 cut(s)	376, 538
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	4 cut(s)	90, 234, 336, 515
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	2 cut(s)	120, 481
SchI	GAGTC	1 cut(s)	319
SetI	ASST	8 cut(s)	54, 87, 292, 322, 328, 375, 418, 472
SfaNI	GCATC	3 cut(s)	411, 433, 532
SfcI	CTRYAG	1 cut(s)	377
SinI	GGWCC	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
SphI	GCATGC	1 cut(s)	175
Sse9I	AATT	3 cut(s)	243, 254, 551
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	2 cut(s)	329, 584
StuI	AGGCCT	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	2 cut(s)	205, 505
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	3 cut(s)	243, 254, 551
TatI	WGTACW	1 cut(s)	457
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseFI	GTSAC	2 cut(s)	65, 143
TseI	GCWGC	4 cut(s)	89, 233, 335, 514
Tsp45I	GTSAC	2 cut(s)	65, 143
TspDTI	ATGAA	3 cut(s)	60, 122, 300
VpaK11BI	GGWCC	1 cut(s)	481
VspI	ATTAAT	1 cut(s)	165
XbaI	TCTAGA	1 cut(s)	583
XceI	RCATGY	2 cut(s)	79, 175
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	2 cut(s)	329, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.