Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0010276

Physical Location & Seq

Genomic Coordinates Forward (+)

29381478 .. 29385432

Gene Structure 3955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1227500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGATTTCTCTCCCCTTTCAGACGCCTTGGCCTCCAAATCCTATGGAAAGCTCGCCGATATCTGCGACCAACTCATGCTTCAGGTCGCAGCGGAGGGCGTTTCTTTTCAGGAAGAATGGCCCTACGCCATTCATCTTCTCGCTCTCATATACGCTGGTGATATTAATAGTGTGCGGTTTCTTTGGAAATCGATGCCTGTCGCAGTCAAAGAGAGCAATCCAGAAGTCATCGCTGCTTGGAAAATTGGTCAGAAGTTGTGGGTGCGGGACTACGGGGGTGTGTATGAAGCTATTCGTGGATATGAATGGAGTCAGGATGCTGAAGGTCTTGTTGCAGCCTTCTCAGATCTTTACACAAAGAAAATGTTTCAGCTCCTGCAGTCTGCTTATTCTACAATAAGCATCCAAGACACAGCTCTCTTCTTGGGAATGAGTGAGGATGATGTCACAACTTATGTACTACAGCAAGGTTGGGTTGTGGACCCTGCTTCACAAATGGTTACTGTGAAGAAGCACCCTATCATCACGGAGCAGAAACTGGATGCGAGTACATTGCAGAGCTTGACAGAATATGTATTCCATCTTGAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0001101 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010387 GO:0016043 GO:0016787 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0065003 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSN8_PSD8_EIF3K

Protein Analysis

198

Amino Acids

22.16

Weight (kDa)

4.66

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN8_PSD8_EIF3K	PF10075	38 - 174	2.3e-35	CSN8/PSMD8/EIF3K family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14110
fragaria_vesca	FvH4_5g29770
malus_domestica	MD08G1227500.v1.1 MD15G1419900.v1.1
prunus_persica	Prupe.1G186200_v2.0.a1 Prupe.1G186200_v2.0.a1 Prupe.1G564800_v2.0.a1
pyrus_communis	pycom08g19850 pycom15g37270
rosa_chinensis	RchiOBHm_Chr7g0223291
rosa_laevigata	RLG00000001990
rosa_multiflora	Rmu_sc0005124.1_g000011 Rmu_sc0013144.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235950
rosa_rugosa	Rorug07G0215800
rosa_samantha	Rh7BG347400 Rh7BG349000 Rh7CG378000 Rh7DG354900
rosa_wichuraiana	Rw0G009420 Rw7G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	92, 175, 265
AcuI	CTGAAG	2 cut(s)	65, 342
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	2 cut(s)	459, 550
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
AluBI	AGCT	5 cut(s)	52, 290, 373, 416, 561
AluI	AGCT	5 cut(s)	52, 290, 373, 416, 561
AlwNI	CAGNNNCTG	2 cut(s)	376, 538
AoxI	GGCC	2 cut(s)	30, 119
ApeKI	GCWGC	3 cut(s)	89, 233, 335
AseI	ATTAAT	1 cut(s)	165
Asp700I	GAANNNNTTC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	120, 481
AsuHPI	GGTGA	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	481
BbvI	GCAGC	3 cut(s)	101, 220, 347
BccI	CCATC	1 cut(s)	588
BcgI	CGANNNNNNTGC	2 cut(s)	535, 569
BfmI	CTRYAG	2 cut(s)	377, 461
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	3 cut(s)	90, 234, 336
BlsI	GCNGC	3 cut(s)	91, 235, 337
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	2 cut(s)	120, 481
BmiI	GGNNCC	1 cut(s)	483
BmsI	GCATC	4 cut(s)	183, 307, 411, 532
Bsa29I	ATCGAT	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	543
Bse3DI	GCAATG	1 cut(s)	551
BseCI	ATCGAT	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	4 cut(s)	322, 402, 445, 547
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	543
BseXI	GCAGC	3 cut(s)	101, 220, 347
BshFI	GGCC	2 cut(s)	32, 121
BshVI	ATCGAT	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	32, 121
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	3 cut(s)	92, 175, 265
BspANI	GGCC	2 cut(s)	32, 121
BspCNI	CTCAG	1 cut(s)	356
BspDI	ATCGAT	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	483
BspMAI	CTGCAG	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	543
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	346
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	1 cut(s)	425
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	343
BstF5I	GGATG	4 cut(s)	322, 402, 445, 547
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstSFI	CTRYAG	2 cut(s)	377, 461
BstV1I	GCAGC	3 cut(s)	101, 220, 347
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	32, 121
BsuTUI	ATCGAT	1 cut(s)	191
BtgZI	GCGATG	1 cut(s)	214
BtsCI	GGATG	4 cut(s)	322, 402, 445, 547
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	2 cut(s)	376, 538
Cfr13I	GGNCC	2 cut(s)	120, 481
ClaI	ATCGAT	1 cut(s)	191
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	458, 549
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	8 cut(s)	32, 52, 121, 290, 338, 373, 416, 561
CviKI_1	RGCY	8 cut(s)	32, 52, 121, 290, 338, 373, 416, 561
CviQI	GTAC	2 cut(s)	458, 549
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	2 cut(s)	65, 342
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	79
FaiI	YATR	8 cut(s)	45, 77, 149, 151, 285, 303, 456, 573
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	1 cut(s)	75
FauI	CCCGC	1 cut(s)	258
Fnu4HI	GCNGC	3 cut(s)	90, 234, 336
FokI	GGATG	4 cut(s)	329, 389, 452, 554
Fsp4HI	GCNGC	3 cut(s)	90, 234, 336
GluI	GCNGC	3 cut(s)	90, 234, 336
HaeIII	GGCC	2 cut(s)	32, 121
HgaI	GACGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	79
HinfI	GANTC	1 cut(s)	310
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	3 cut(s)	22, 252, 346
Hpy188III	TCNNGA	4 cut(s)	110, 221, 314, 584
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	2 cut(s)	317, 349
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4V	TGCA	3 cut(s)	335, 379, 556
HpyF3I	CTNAG	1 cut(s)	343
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	2 cut(s)	378, 529
LpnPI	CCDG	9 cut(s)	68, 95, 141, 210, 234, 299, 389, 498, 524
Lsp1109I	GCAGC	3 cut(s)	101, 220, 347
LweI	GCATC	4 cut(s)	183, 307, 411, 532
MaeIII	GTNAC	2 cut(s)	445, 499
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	4 cut(s)	125, 128, 412, 520
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	3 cut(s)	43, 88, 430
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	92
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	483
NmuCI	GTSAC	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	291
PkrI	GCNGC	3 cut(s)	91, 235, 337
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PshBI	ATTAAT	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	2 cut(s)	120, 481
PstI	CTGCAG	1 cut(s)	381
PstNI	CAGNNNCTG	2 cut(s)	376, 538
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	2 cut(s)	459, 550
RsaNI	GTAC	2 cut(s)	458, 549
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	3 cut(s)	90, 234, 336
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	2 cut(s)	120, 481
SchI	GAGTC	1 cut(s)	319
SetI	ASST	8 cut(s)	54, 87, 292, 328, 375, 418, 472, 563
SfaNI	GCATC	4 cut(s)	183, 307, 411, 532
SfcI	CTRYAG	2 cut(s)	377, 461
SinI	GGWCC	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	3 cut(s)	92, 175, 265
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	191
TasI	AATT	1 cut(s)	243
TatI	WGTACW	2 cut(s)	457, 548
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	3 cut(s)	89, 233, 335
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	3 cut(s)	122, 300, 318
TspGWI	ACGGA	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	481
VspI	ATTAAT	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.