Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010276

Physical Location & Seq

Genomic Coordinates Forward (+)

52142921 .. 52146806

Gene Structure 3886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1419900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGATTTCTCTCCCCTTTCAGACGCCTTAGCCTCCAAATCGTATGGAAAGATCGCCGATATCTGCGACCAGCTCATGCTTCAGGTCGCAGCGGAGGGCGTTGCTTTTCAGGACGACTGGCCCTACGCCATTCATCTTCTCGGTCTCATATACGCGGGCGATATTAACGGTGCACGGTTTCTTTGGAAATCAATGCCTGTTGCAGTCAAAGAGAGCAACCTGGAAGTTATCGCTGCTTGGAAAATTGGTCAGAAGTTGTGGGTGAGGGATTACGGGGGTGTGTATGAAGCAATTCGGGGATATGACTGGAGTCAGGAAGCTCAAGGTCTTGTTGCAGCCTTTTCAGATCTTTACACAAAGAAAATGTTTCAGCTTCTGCAGTCTGCTTATTCTACAATAAGTATCCAAGACACAGCTGTCTTCTTGGGAATGAGTGAGGATGATGCCACAACTTATGTACTACAGCAAGGTTGGGTCGTCGACCCTGCTTCACAAATGCTTACCGTGAAGAAGCAGCCTATTGTTACAGAGCAGAAACTGGATGCGAGTAAATTGCAGAACTTGACAGAATACGTATTCCATCTCGAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0001101 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010387 GO:0016043 GO:0016787 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0065003 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSN8_PSD8_EIF3K

Protein Analysis

198

Amino Acids

22.06

Weight (kDa)

4.69

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN8_PSD8_EIF3K	PF10075	39 - 176	8.5e-35	CSN8/PSMD8/EIF3K family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14110
fragaria_vesca	FvH4_5g29770
malus_domestica	MD08G1227500.v1.1 MD15G1419900.v1.1
prunus_persica	Prupe.1G186200_v2.0.a1 Prupe.1G186200_v2.0.a1 Prupe.1G564800_v2.0.a1
pyrus_communis	pycom08g19850 pycom15g37270
rosa_chinensis	RchiOBHm_Chr7g0223291
rosa_laevigata	RLG00000001990
rosa_multiflora	Rmu_sc0005124.1_g000011 Rmu_sc0013144.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235950
rosa_rugosa	Rorug07G0215800
rosa_samantha	Rh7BG347400 Rh7BG349000 Rh7CG378000 Rh7DG354900
rosa_wichuraiana	Rw0G009420 Rw7G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	480
AccII	CGCG	1 cut(s)	155
AciI	CCGC	2 cut(s)	92, 155
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	459
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	4 cut(s)	73, 320, 373, 416
AluI	AGCT	4 cut(s)	73, 320, 373, 416
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	149
Alw44I	GTGCAC	1 cut(s)	171
AlwNI	CAGNNNCTG	2 cut(s)	376, 538
Ama87I	CYCGRG	1 cut(s)	584
AoxI	GGCC	1 cut(s)	119
ApaLI	GTGCAC	1 cut(s)	171
ApeKI	GCWGC	4 cut(s)	89, 233, 335, 514
Asp700I	GAANNNNTTC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	4 cut(s)	101, 220, 347, 526
BccI	CCATC	1 cut(s)	588
BcgI	CGANNNNNNTGC	2 cut(s)	535, 569
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	149
BfmI	CTRYAG	2 cut(s)	377, 461
BfuI	GTATCC	1 cut(s)	413
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	4 cut(s)	90, 234, 336, 515
BlsI	GCNGC	4 cut(s)	91, 235, 337, 516
Bme1390I	CCNGG	1 cut(s)	221
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	2 cut(s)	433, 532
BoxI	GACNNNNGTC	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	412
BpmI	CTGGAG	1 cut(s)	328
Bpu10I	CCTNAGC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	574
BsaHI	GRCGYC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	149
Bse1I	ACTGG	3 cut(s)	122, 311, 543
BseBI	CCWGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	445, 547
BseNI	ACTGG	3 cut(s)	122, 311, 543
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	4 cut(s)	101, 220, 347, 526
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	584
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	121
Bso31I	GGTCTC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	584
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	51, 346
BspACI	CCGC	2 cut(s)	92, 155
BspANI	GGCC	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	155
BspMAI	CTGCAG	1 cut(s)	381
BspTNI	GGTCTC	1 cut(s)	149
BsrI	ACTGG	3 cut(s)	122, 311, 543
BssMI	GATC	2 cut(s)	51, 346
BssNI	GRCGYC	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	3 cut(s)	170, 177, 505
BstACI	GRCGYC	1 cut(s)	24
BstBAI	YACGTR	1 cut(s)	574
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	445, 547
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	54, 349
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	2 cut(s)	51, 346
BstNI	CCWGG	1 cut(s)	221
BstPAI	GACNNNNGTC	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	2 cut(s)	377, 461
BstSLI	GKGCMC	1 cut(s)	175
BstSNI	TACGTA	1 cut(s)	574
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	4 cut(s)	101, 220, 347, 526
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	445, 547
Cac8I	GCNNGC	1 cut(s)	157
CaiI	CAGNNNCTG	2 cut(s)	376, 538
Cfr13I	GGNCC	1 cut(s)	120
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	8 cut(s)	32, 73, 121, 320, 338, 373, 416, 517
CviKI_1	RGCY	8 cut(s)	32, 73, 121, 320, 338, 373, 416, 517
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	2 cut(s)	53, 348
DpnII	GATC	2 cut(s)	51, 346
DrdI	GACNNNNNNGTC	1 cut(s)	416
DseDI	GACNNNNNNGTC	1 cut(s)	416
Eco105I	TACGTA	1 cut(s)	574
Eco31I	GGTCTC	1 cut(s)	149
Eco32I	GATATC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	219
EcoRV	GATATC	1 cut(s)	61
FaeI	CATG	1 cut(s)	79
FaiI	YATR	7 cut(s)	45, 77, 149, 151, 285, 303, 456
FatI	CATG	1 cut(s)	75
FauI	CCCGC	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	4 cut(s)	90, 234, 336, 515
FokI	GGATG	2 cut(s)	452, 554
Fsp4HI	GCNGC	4 cut(s)	90, 234, 336, 515
GluI	GCNGC	4 cut(s)	90, 234, 336, 515
GsuI	CTGGAG	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	121
HgaI	GACGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	1 cut(s)	310
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	2 cut(s)	173, 481
Hpy188I	TCNGA	3 cut(s)	22, 252, 346
Hpy188III	TCNNGA	3 cut(s)	110, 314, 584
Hpy8I	GTNNAC	2 cut(s)	173, 481
Hpy99I	CGWCG	1 cut(s)	482
HpyCH4III	ACNGT	3 cut(s)	170, 177, 505
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	5 cut(s)	173, 203, 335, 379, 556
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	573
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	51, 346
Lsp1109I	GCAGC	4 cut(s)	101, 220, 347, 526
LweI	GCATC	2 cut(s)	433, 532
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	2 cut(s)	53, 348
MboI	GATC	2 cut(s)	51, 346
MboII	GAAGA	3 cut(s)	128, 412, 520
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	3 cut(s)	243, 291, 551
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	4 cut(s)	43, 88, 258, 430
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	1 cut(s)	165
MspA1I	CMGCKG	2 cut(s)	92, 416
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	155
NdeII	GATC	2 cut(s)	51, 346
NlaIII	CATG	1 cut(s)	79
PaeR7I	CTCGAG	1 cut(s)	584
PdmI	GAANNNNTTC	1 cut(s)	291
PkrI	GCNGC	4 cut(s)	91, 235, 337, 516
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
Ppu21I	YACGTR	1 cut(s)	574
PshAI	GACNNNNGTC	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	381
PstNI	CAGNNNCTG	2 cut(s)	376, 538
PsuI	RGATCY	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
SalI	GTCGAC	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	4 cut(s)	90, 234, 336, 515
Sau3AI	GATC	2 cut(s)	51, 346
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	9 cut(s)	75, 87, 222, 322, 328, 375, 418, 472, 576
SfaNI	GCATC	2 cut(s)	433, 532
SfcI	CTRYAG	2 cut(s)	377, 461
Sfr274I	CTCGAG	1 cut(s)	584
SlaI	CTCGAG	1 cut(s)	584
SmlI	CTYRAG	2 cut(s)	321, 584
SmoI	CTYRAG	2 cut(s)	321, 584
SnaBI	TACGTA	1 cut(s)	574
Sse9I	AATT	3 cut(s)	243, 291, 551
SsiI	CCGC	2 cut(s)	92, 155
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	170, 177, 505
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	2 cut(s)	480, 585
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	3 cut(s)	243, 291, 551
TatI	WGTACW	1 cut(s)	457
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseI	GCWGC	4 cut(s)	89, 233, 335, 514
TspDTI	ATGAA	2 cut(s)	122, 300
VneI	GTGCAC	1 cut(s)	171
XhoI	CTCGAG	1 cut(s)	584
XmiI	GTMKAC	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.