Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010276

Physical Location & Seq

Genomic Coordinates Forward (+)

37178522 .. 37181871

Gene Structure 3350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTCATTTTCCCAAAAACTTGTATTGGGTTATAGCCCGGCCCAACCTGGCCCTCTGGGTTTAATATTGATACATACAGATACAGTGACGAAAAATACAGAGAGGTCCTTCTTCCGAGTACAGGCAACCATGGATTTCTCTCCCCTTTCAGACGCCTTAGCCTCCAAATCGTATGGAAAGATCGCCGATATCTGCGACCAACTAATGCTTCAGGTCGCAGCGGAGGGCGTTGCTTTTCAGGACGAATGGCCCTACGCCATTCATCTTCTCGGTCTCATATACGCGGGCGATATTAATGGTGCGCGGTTTCTTTGGAAATCAATGCCTGTTGCAGTCAAAGAGAGCAACCCGGAAGTTATCGCTGCTTGGAAAATTGGTCAAAAGTTGTGGGTGAGGGATTACGGGGGTGTGTATGAAGCAATTCGGGGATATGACTGGAGTCAGGAAGCTCAAGATCTTTACACAAAGAAAATGTTTCAGCTTCTGCAGTCTGCTTATTCTACAATAAGCATCCAAGACACAGCTGTCTTCTTGGGGATGAGCAAGGATGATGCCACAACTTATGTACTACAGCAAGGTTGGGTCGTCGACCCTGCTTCACGAATGCTTACCGTGAAGAAGCAGCCTATTGTTACAGAGCAGAAACTGGATGCGAGTAAATTGCAGAACTTGACAGAATATGTATTCCATCTCGAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0001101 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010387 GO:0016043 GO:0016787 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0065003 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSN8_PSD8_EIF3K

Protein Analysis

234

Amino Acids

26.17

Weight (kDa)

5.57

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN8_PSD8_EIF3K	PF10075	82 - 212	3.3e-29	CSN8/PSMD8/EIF3K family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14110
fragaria_vesca	FvH4_5g29770
malus_domestica	MD08G1227500.v1.1 MD15G1419900.v1.1
prunus_persica	Prupe.1G186200_v2.0.a1 Prupe.1G186200_v2.0.a1 Prupe.1G564800_v2.0.a1
pyrus_communis	pycom08g19850 pycom15g37270
rosa_chinensis	RchiOBHm_Chr7g0223291
rosa_laevigata	RLG00000001990
rosa_multiflora	Rmu_sc0005124.1_g000011 Rmu_sc0013144.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235950
rosa_rugosa	Rorug07G0215800
rosa_samantha	Rh7BG347400 Rh7BG349000 Rh7CG378000 Rh7DG354900
rosa_wichuraiana	Rw0G009420 Rw7G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	524
AccI	GTMKAC	1 cut(s)	588
AccII	CGCG	2 cut(s)	284, 304
AciI	CCGC	3 cut(s)	221, 284, 304
AcuI	CTGAAG	1 cut(s)	194
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	2 cut(s)	120, 567
AfiI	CCNNNNNNNGG	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	46
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AluBI	AGCT	3 cut(s)	449, 481, 524
AluI	AGCT	3 cut(s)	449, 481, 524
Alw26I	GTCTC	1 cut(s)	278
AlwNI	CAGNNNCTG	2 cut(s)	484, 646
Ama87I	CYCGRG	1 cut(s)	692
AoxI	GGCC	3 cut(s)	39, 49, 248
ApeKI	GCWGC	3 cut(s)	218, 362, 622
AseI	ATTAAT	1 cut(s)	294
Asp700I	GAANNNNTTC	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	4 cut(s)	40, 50, 105, 249
AsuC2I	CCSGG	2 cut(s)	38, 350
AsuHPI	GGTGA	1 cut(s)	403
AvaI	CYCGRG	1 cut(s)	692
AvaII	GGWCC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	520
BbvI	GCAGC	3 cut(s)	230, 349, 634
BccI	CCATC	1 cut(s)	696
BcgI	CGANNNNNNTGC	2 cut(s)	643, 677
BciT130I	CCWGG	1 cut(s)	48
BcnI	CCSGG	2 cut(s)	38, 350
BcoDI	GTCTC	1 cut(s)	278
BfmI	CTRYAG	2 cut(s)	485, 569
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	3 cut(s)	219, 363, 623
BlsI	GCNGC	3 cut(s)	220, 364, 624
Bme1390I	CCNGG	3 cut(s)	38, 48, 350
Bme18I	GGWCC	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	692
BmgT120I	GGNCC	4 cut(s)	40, 50, 105, 249
BmrFI	CCNGG	3 cut(s)	38, 48, 350
BmsI	GCATC	3 cut(s)	519, 541, 640
BoxI	GACNNNNGTC	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	520
BpmI	CTGGAG	1 cut(s)	457
Bpu10I	CCTNAGC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	435
BpuMI	CCSGG	2 cut(s)	38, 350
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	440, 651
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	4 cut(s)	510, 543, 553, 655
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseNI	ACTGG	2 cut(s)	440, 651
BseXI	GCAGC	3 cut(s)	230, 349, 634
Bsh1236I	CGCG	2 cut(s)	284, 304
BshFI	GGCC	3 cut(s)	41, 51, 250
BsiHKCI	CYCGRG	1 cut(s)	692
BsiSI	CCGG	2 cut(s)	38, 350
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	609
BsnI	GGCC	3 cut(s)	41, 51, 250
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	692
Bsp143I	GATC	2 cut(s)	180, 454
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	3 cut(s)	221, 284, 304
BspANI	GGCC	3 cut(s)	41, 51, 250
BspFNI	CGCG	2 cut(s)	284, 304
BspMAI	CTGCAG	1 cut(s)	489
BspTNI	GGTCTC	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	440, 651
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	180, 454
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	85, 613
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	157
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	4 cut(s)	510, 543, 553, 655
BstFNI	CGCG	2 cut(s)	284, 304
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	2 cut(s)	183, 457
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	2 cut(s)	180, 454
BstNI	CCWGG	1 cut(s)	48
BstPAI	GACNNNNGTC	1 cut(s)	438
BstSCI	CCNGG	3 cut(s)	36, 46, 348
BstSFI	CTRYAG	2 cut(s)	485, 569
BstUI	CGCG	2 cut(s)	284, 304
BstV1I	GCAGC	3 cut(s)	230, 349, 634
BstV2I	GAAGAC	1 cut(s)	520
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuRI	GGCC	3 cut(s)	41, 51, 250
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	4 cut(s)	510, 543, 553, 655
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	286
CaiI	CAGNNNCTG	2 cut(s)	484, 646
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	4 cut(s)	40, 50, 105, 249
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	119, 566
CspCI	CAANNNNNGTGG	2 cut(s)	368, 403
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	9 cut(s)	36, 41, 51, 161, 250, 449, 481, 524, 625
CviKI_1	RGCY	9 cut(s)	36, 41, 51, 161, 250, 449, 481, 524, 625
CviQI	GTAC	2 cut(s)	119, 566
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	2 cut(s)	182, 456
DpnII	GATC	2 cut(s)	180, 454
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	692
EcoO109I	RGGNCCY	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	46
EcoRV	GATATC	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	1 cut(s)	133
FatI	CATG	1 cut(s)	129
FauI	CCCGC	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	3 cut(s)	219, 363, 623
FokI	GGATG	4 cut(s)	497, 550, 560, 662
Fsp4HI	GCNGC	3 cut(s)	219, 363, 623
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	3 cut(s)	219, 363, 623
GsuI	CTGGAG	1 cut(s)	457
HaeIII	GGCC	3 cut(s)	41, 51, 250
HapII	CCGG	2 cut(s)	38, 350
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	304
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	1 cut(s)	439
HpaII	CCGG	2 cut(s)	38, 350
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	2 cut(s)	116, 151
Hpy188III	TCNNGA	5 cut(s)	239, 443, 452, 600, 692
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	590
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	2 cut(s)	85, 613
HpyCH4V	TGCA	3 cut(s)	332, 487, 664
HpyF3I	CTNAG	1 cut(s)	157
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	180, 454
Lsp1109I	GCAGC	3 cut(s)	230, 349, 634
LweI	GCATC	3 cut(s)	519, 541, 640
MaeIII	GTNAC	2 cut(s)	85, 631
MalI	GATC	2 cut(s)	182, 456
MboI	GATC	2 cut(s)	180, 454
MboII	GAAGA	4 cut(s)	103, 257, 520, 628
MflI	RGATCY	1 cut(s)	454
MluCI	AATT	3 cut(s)	372, 420, 659
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	5 cut(s)	63, 96, 172, 217, 387
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	2 cut(s)	62, 294
MspA1I	CMGCKG	2 cut(s)	221, 524
MspI	CCGG	2 cut(s)	38, 350
MspR9I	CCNGG	3 cut(s)	38, 48, 350
Mva1269I	GAATGC	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	2 cut(s)	284, 304
NciI	CCSGG	2 cut(s)	38, 350
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	2 cut(s)	180, 454
NlaIII	CATG	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	692
PctI	GAATGC	1 cut(s)	609
PdmI	GAANNNNTTC	1 cut(s)	420
PkrI	GCNGC	3 cut(s)	220, 364, 624
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
PpuMI	RGGWCCY	1 cut(s)	105
PshAI	GACNNNNGTC	1 cut(s)	438
PshBI	ATTAAT	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspPI	GGNCC	4 cut(s)	40, 50, 105, 249
PspPPI	RGGWCCY	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	489
PstNI	CAGNNNCTG	2 cut(s)	484, 646
PsuI	RGATCY	1 cut(s)	454
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	2 cut(s)	120, 567
RsaNI	GTAC	2 cut(s)	119, 566
SalI	GTCGAC	1 cut(s)	587
SaqAI	TTAA	2 cut(s)	62, 294
SatI	GCNGC	3 cut(s)	219, 363, 623
Sau3AI	GATC	2 cut(s)	180, 454
Sau96I	GGNCC	4 cut(s)	40, 50, 105, 249
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	3 cut(s)	38, 48, 350
SetI	ASST	7 cut(s)	49, 107, 216, 451, 483, 526, 580
SfaNI	GCATC	3 cut(s)	519, 541, 640
SfcI	CTRYAG	2 cut(s)	485, 569
Sfr274I	CTCGAG	1 cut(s)	692
SinI	GGWCC	1 cut(s)	105
SlaI	CTCGAG	1 cut(s)	692
SmlI	CTYRAG	2 cut(s)	450, 692
SmoI	CTYRAG	2 cut(s)	450, 692
Sse9I	AATT	3 cut(s)	372, 420, 659
SsiI	CCGC	3 cut(s)	221, 284, 304
SspI	AATATT	1 cut(s)	66
StyD4I	CCNGG	3 cut(s)	36, 46, 348
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	85, 613
TaqI	TCGA	2 cut(s)	588, 693
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	3 cut(s)	372, 420, 659
TatI	WGTACW	2 cut(s)	118, 565
Tru1I	TTAA	2 cut(s)	62, 294
Tru9I	TTAA	2 cut(s)	62, 294
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	3 cut(s)	218, 362, 622
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	2 cut(s)	251, 429
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	105
VspI	ATTAAT	1 cut(s)	294
XhoI	CTCGAG	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	588
XmnI	GAANNNNTTC	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.