Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010276

Physical Location & Seq

Genomic Coordinates Reverse (-)

36383209 .. 36387672

Gene Structure 4464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG349000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGATTTCTCTCCACTCTCCGAGGCCTTGGCCTCCAAATCGTATGAAAGAATCGCCGATATCTGCGACGAAATCATGCTTCAGGTCGCGGCGGAGGGCGTCTCTTTCCAGGAAGACTGGCCCTACGCCATTCATCTTCTCGGTCACATTTACGCCGGCGATATTAACAGTATGAGGTTTCTTTGGAAGTCGATGCCTTCTGCGGTCAAAGATAACCAGCAGGAAGTGCAGGCTGCTTGGAAAATTGGTCAGAAGCTCTGGGTGCGGGACTATGGGGGCGTGTATGAAGCTATTCGTGGATTTGATTGGAGTCAGGAAGCTCAAGGTCTTGTTGCGGCCTTTTCAGGCAAGTTTCTCGAGATCACAACCTGTGCATTAGTGTTACTTGTTTTCTACATGTGTCATAATCGTAGTTTCAGCATTATTTGTATAATGATTCATAACAGTAGCATGATAATGATTTATACTCCCAAGGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0001101 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010387 GO:0016043 GO:0016787 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0065003 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSN8_PSD8_EIF3K

Protein Analysis

160

Amino Acids

18.24

Weight (kDa)

5.09

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN8_PSD8_EIF3K	PF10075	39 - 118	7.7e-17	CSN8/PSMD8/EIF3K family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14110
fragaria_vesca	FvH4_5g29770
malus_domestica	MD08G1227500.v1.1 MD15G1419900.v1.1
prunus_persica	Prupe.1G186200_v2.0.a1 Prupe.1G186200_v2.0.a1 Prupe.1G564800_v2.0.a1
pyrus_communis	pycom08g19850 pycom15g37270
rosa_chinensis	RchiOBHm_Chr7g0223291
rosa_laevigata	RLG00000001990
rosa_multiflora	Rmu_sc0005124.1_g000011 Rmu_sc0013144.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235950
rosa_rugosa	Rorug07G0215800
rosa_samantha	Rh7BG347400 Rh7BG349000 Rh7CG378000 Rh7DG354900
rosa_wichuraiana	Rw0G009420 Rw7G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	89
AciI	CCGC	5 cut(s)	89, 92, 203, 265, 335
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	99
AflIII	ACRYGT	1 cut(s)	396
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	3 cut(s)	256, 290, 320
AluI	AGCT	3 cut(s)	256, 290, 320
Alw26I	GTCTC	1 cut(s)	106
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	4 cut(s)	24, 30, 119, 336
ApeKI	GCWGC	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	120
AvaI	CYCGRG	1 cut(s)	356
BbsI	GAAGAC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	220
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciT130I	CCWGG	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	106
BisI	GCNGC	3 cut(s)	90, 234, 336
BlsI	GCNGC	3 cut(s)	91, 235, 337
Bme1390I	CCNGG	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	120
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BpuEI	CTTGAG	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	3 cut(s)	21, 27, 471
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	3 cut(s)	21, 27, 471
BseNI	ACTGG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	4 cut(s)	26, 32, 121, 338
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	106
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	4 cut(s)	26, 32, 121, 338
BsoBI	CYCGRG	1 cut(s)	356
Bsp143I	GATC	1 cut(s)	360
BspACI	CCGC	5 cut(s)	89, 92, 203, 265, 335
BspANI	GGCC	4 cut(s)	26, 32, 121, 338
BspFNI	CGCG	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	3 cut(s)	21, 27, 471
BssMI	GATC	1 cut(s)	360
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	2 cut(s)	27, 471
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	170, 446
BstACI	GRCGYC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	157, 231
BstFNI	CGCG	1 cut(s)	89
BstKTI	GATC	1 cut(s)	363
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 262
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	1 cut(s)	120
BsuRI	GGCC	4 cut(s)	26, 32, 121, 338
Cac8I	GCNNGC	2 cut(s)	157, 231
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	120
CseI	GACGC	1 cut(s)	88
CviAII	CATG	3 cut(s)	76, 397, 451
CviJI	RGCY	8 cut(s)	26, 32, 121, 233, 256, 290, 320, 338
CviKI_1	RGCY	8 cut(s)	26, 32, 121, 233, 256, 290, 320, 338
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
EciI	GGCGGA	1 cut(s)	107
Eco130I	CCWWGG	2 cut(s)	27, 471
Eco147I	AGGCCT	1 cut(s)	26
Eco32I	GATATC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	108
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	2 cut(s)	27, 471
ErhI	CCWWGG	2 cut(s)	27, 471
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	3 cut(s)	79, 400, 454
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	75, 396, 450
FauI	CCCGC	1 cut(s)	258
Fnu4HI	GCNGC	3 cut(s)	90, 234, 336
Fsp4HI	GCNGC	3 cut(s)	90, 234, 336
GluI	GCNGC	3 cut(s)	90, 234, 336
HaeIII	GGCC	4 cut(s)	26, 32, 121, 338
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	79, 400, 454
HinfI	GANTC	3 cut(s)	51, 310, 436
HpaII	CCGG	1 cut(s)	156
Hpy188I	TCNGA	2 cut(s)	22, 252
Hpy188III	TCNNGA	3 cut(s)	314, 356, 358
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	2 cut(s)	170, 446
HpyCH4V	TGCA	2 cut(s)	229, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 262
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	79, 400, 454
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	360
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	143, 381
MalI	GATC	1 cut(s)	362
MboI	GATC	1 cut(s)	360
MboII	GAAGA	2 cut(s)	125, 128
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	4 cut(s)	16, 43, 88, 168
MreI	CGCCGGCG	1 cut(s)	155
MroNI	GCCGGC	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	455
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	226, 262
NaeI	GCCGGC	1 cut(s)	157
NdeII	GATC	1 cut(s)	360
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	3 cut(s)	79, 400, 454
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	400
PaeR7I	CTCGAG	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	26
PciI	ACATGT	1 cut(s)	396
PdiI	GCCGGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	51, 436
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	3 cut(s)	91, 235, 337
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PscI	ACATGT	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	3 cut(s)	90, 234, 336
Sau3AI	GATC	1 cut(s)	360
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	7 cut(s)	87, 179, 258, 292, 322, 328, 371
SfaNI	GCATC	1 cut(s)	183
Sfr274I	CTCGAG	1 cut(s)	356
SgrAI	CRCCGGYG	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	2 cut(s)	321, 356
SmoI	CTYRAG	2 cut(s)	321, 356
Sse9I	AATT	1 cut(s)	243
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	5 cut(s)	89, 92, 203, 265, 335
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	27, 471
TaaI	ACNGT	2 cut(s)	170, 446
TaqI	TCGA	2 cut(s)	191, 357
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	243
TauI	GCSGC	2 cut(s)	92, 338
TfiI	GAWTC	2 cut(s)	51, 436
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	4 cut(s)	60, 122, 300, 428
XceI	RCATGY	1 cut(s)	400
XhoI	CTCGAG	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.