Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010276

Physical Location & Seq

Genomic Coordinates Forward (+)

19799574 .. 19801739

Gene Structure 2166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g19850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGATTTCTCTCCCCTTTCAGAAGCCTTGGCCTCCAAATCCTATGGAAAGCTTGCCGATATCTGCAACCAACTCATGCTTCAAGTCGCAGCGGAGGGCGTTTCTTTTCAGGACGACTGGCCCTACGCCATTCATCTTCTCGCTCTCATATACGCTGGTGATATTAATAGTGCGCGGTTTCTTTGGAAATCGATGCCTGTCGCAGTCAAAGAGAGCAATCCAGAAGTCATTGCTGCTTGGAAAATTGGTCAGAAGTTGTGGGTGCGGGACTTCGGGGGTGTGTATGAAGCTATTCGTGGATATGAATGGAGTCAGGATGCTGAAGGTCTTGTTGCAGCCTTCTCAGATCTTTACACAAAGAAAATGTTTCAGCTCCTGCAGTCTGCTTATTCTACAATAAGCATCCAAGACACAGCTCTCTTCTTGGGAATGAGTGAGGATGATGTCACAACTTATGTACTACAGCAAGGTTGGGTTGTGGACCCTGCTTCGCAAATGGTTACTGTGAAGAAGCAGCCTATTGTCACGGAGCAGAAACTGGATGCGAGTAAATTGCAGAGCTTGACAGAATATGTATTCCATCTCGAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0001101 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010387 GO:0016043 GO:0016787 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0065003 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSN8_PSD8_EIF3K

Protein Analysis

198

Amino Acids

22.1

Weight (kDa)

4.72

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN8_PSD8_EIF3K	PF10075	39 - 176	8.5e-36	CSN8/PSMD8/EIF3K family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14110
fragaria_vesca	FvH4_5g29770
malus_domestica	MD08G1227500.v1.1 MD15G1419900.v1.1
prunus_persica	Prupe.1G186200_v2.0.a1 Prupe.1G186200_v2.0.a1 Prupe.1G564800_v2.0.a1
pyrus_communis	pycom08g19850 pycom15g37270
rosa_chinensis	RchiOBHm_Chr7g0223291
rosa_laevigata	RLG00000001990
rosa_multiflora	Rmu_sc0005124.1_g000011 Rmu_sc0013144.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235950
rosa_rugosa	Rorug07G0215800
rosa_samantha	Rh7BG347400 Rh7BG349000 Rh7CG378000 Rh7DG354900
rosa_wichuraiana	Rw0G009420 Rw7G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	175
AciI	CCGC	3 cut(s)	92, 175, 265
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	1 cut(s)	459
AgsI	TTSAA	1 cut(s)	83
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
AluBI	AGCT	5 cut(s)	52, 290, 373, 416, 561
AluI	AGCT	5 cut(s)	52, 290, 373, 416, 561
AlwNI	CAGNNNCTG	2 cut(s)	376, 538
Ama87I	CYCGRG	1 cut(s)	584
AoxI	GGCC	2 cut(s)	30, 119
ApeKI	GCWGC	4 cut(s)	89, 233, 335, 514
AseI	ATTAAT	1 cut(s)	165
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	2 cut(s)	120, 481
AsuHPI	GGTGA	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	481
BbvI	GCAGC	4 cut(s)	101, 220, 347, 526
BccI	CCATC	1 cut(s)	588
BcgI	CGANNNNNNTGC	2 cut(s)	535, 569
BfmI	CTRYAG	2 cut(s)	377, 461
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	4 cut(s)	90, 234, 336, 515
BlsI	GCNGC	4 cut(s)	91, 235, 337, 516
Bme18I	GGWCC	1 cut(s)	481
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	2 cut(s)	120, 481
BmiI	GGNNCC	1 cut(s)	483
BmsI	GCATC	4 cut(s)	183, 307, 411, 532
Bsa29I	ATCGAT	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	27
Bse1I	ACTGG	2 cut(s)	122, 543
Bse3DI	GCAATG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	4 cut(s)	322, 402, 445, 547
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	2 cut(s)	122, 543
BseXI	GCAGC	4 cut(s)	101, 220, 347, 526
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	2 cut(s)	32, 121
BshVI	ATCGAT	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	584
BslFI	GGGAC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	32, 121
BsoBI	CYCGRG	1 cut(s)	584
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	3 cut(s)	92, 175, 265
BspANI	GGCC	2 cut(s)	32, 121
BspCNI	CTCAG	1 cut(s)	356
BspDI	ATCGAT	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	483
BspMAI	CTGCAG	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	122, 543
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	343
BstF5I	GGATG	4 cut(s)	322, 402, 445, 547
BstFNI	CGCG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstSFI	CTRYAG	2 cut(s)	377, 461
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	4 cut(s)	101, 220, 347, 526
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	32, 121
BsuTUI	ATCGAT	1 cut(s)	191
BtsCI	GGATG	4 cut(s)	322, 402, 445, 547
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	2 cut(s)	376, 538
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	2 cut(s)	120, 481
ClaI	ATCGAT	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	1 cut(s)	76
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	584
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	79
FaiI	YATR	8 cut(s)	45, 77, 149, 151, 285, 303, 456, 573
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	1 cut(s)	75
FauI	CCCGC	1 cut(s)	258
Fnu4HI	GCNGC	4 cut(s)	90, 234, 336, 515
FokI	GGATG	4 cut(s)	329, 389, 452, 554
Fsp4HI	GCNGC	4 cut(s)	90, 234, 336, 515
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	4 cut(s)	90, 234, 336, 515
HaeIII	GGCC	2 cut(s)	32, 121
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	1 cut(s)	310
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	3 cut(s)	22, 252, 346
Hpy188III	TCNNGA	4 cut(s)	110, 221, 314, 584
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	2 cut(s)	317, 349
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4V	TGCA	4 cut(s)	66, 335, 379, 556
HpyF3I	CTNAG	1 cut(s)	343
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	2 cut(s)	378, 529
LpnPI	CCDG	9 cut(s)	95, 103, 141, 210, 234, 299, 389, 498, 524
Lsp1109I	GCAGC	4 cut(s)	101, 220, 347, 526
LweI	GCATC	4 cut(s)	183, 307, 411, 532
MaeIII	GTNAC	3 cut(s)	445, 499, 523
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	3 cut(s)	128, 412, 520
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	2 cut(s)	243, 551
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	3 cut(s)	43, 88, 430
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	175
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	483
NmuCI	GTSAC	2 cut(s)	445, 523
PaeR7I	CTCGAG	1 cut(s)	584
PdmI	GAANNNNTTC	1 cut(s)	291
PkrI	GCNGC	4 cut(s)	91, 235, 337, 516
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PshBI	ATTAAT	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	2 cut(s)	120, 481
PstI	CTGCAG	1 cut(s)	381
PstNI	CAGNNNCTG	2 cut(s)	376, 538
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	4 cut(s)	90, 234, 336, 515
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	2 cut(s)	120, 481
SchI	GAGTC	1 cut(s)	319
SetI	ASST	7 cut(s)	54, 292, 328, 375, 418, 472, 563
SfaNI	GCATC	4 cut(s)	183, 307, 411, 532
SfcI	CTRYAG	2 cut(s)	377, 461
Sfr274I	CTCGAG	1 cut(s)	584
SinI	GGWCC	1 cut(s)	481
SlaI	CTCGAG	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	243, 551
SsiI	CCGC	3 cut(s)	92, 175, 265
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	505
TaqI	TCGA	2 cut(s)	191, 585
TasI	AATT	2 cut(s)	243, 551
TatI	WGTACW	1 cut(s)	457
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseFI	GTSAC	2 cut(s)	445, 523
TseI	GCWGC	4 cut(s)	89, 233, 335, 514
Tsp45I	GTSAC	2 cut(s)	445, 523
TspDTI	ATGAA	3 cut(s)	122, 300, 318
TspGWI	ACGGA	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	481
VspI	ATTAAT	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	584
XmnI	GAANNNNTTC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.