Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010276

Physical Location & Seq

Genomic Coordinates Reverse (-)

36273277 .. 36277653

Gene Structure 4377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG347400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCTTCAGGTTGCGGCGGAGGGCGTCTCTTTCCAGGAAGACTGGCCCTACGCCATTCATCTTCTCGGTCACATTTACGCCAGCGATATTAACAGTATGAGGTTTCTTTGGAAGTCGATGCCTTCTGCGGTCAAGGAGAACCAGCAGGAAGTGCAGGCTGCTTGGAAAATTGGTCAGAAGCTCTGGGTGCGGGACTATGGGGGCGTGTATGAAGCTATTCGTGGATTTGATTGGAGTCAGGAAGCTCAAGGTCTTGTTGCGGCCTTTTCAGATCTTTACACCAAGAAGATGTTTCAGCTGCTGCAGTCTGCTTATTCTACAATAAGCATCCAAGATACAGCTCTCTTTTTGGGCATGAATGAGGATGATGCCAGAAATTACGTACGACAGCAAGGTTGGATTGTGGACCCTGCTTCACAAATGATTACTGTGAAGAAGCAGCCTATTATTACTGAGCAGAAACTGAATCCCAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0001101 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010387 GO:0016043 GO:0016787 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0065003 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSN8_PSD8_EIF3K

Protein Analysis

159

Amino Acids

18.18

Weight (kDa)

5.66

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN8_PSD8_EIF3K	PF10075	14 - 150	8.7e-37	CSN8/PSMD8/EIF3K family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14110
fragaria_vesca	FvH4_5g29770
malus_domestica	MD08G1227500.v1.1 MD15G1419900.v1.1
prunus_persica	Prupe.1G186200_v2.0.a1 Prupe.1G186200_v2.0.a1 Prupe.1G564800_v2.0.a1
pyrus_communis	pycom08g19850 pycom15g37270
rosa_chinensis	RchiOBHm_Chr7g0223291
rosa_laevigata	RLG00000001990
rosa_multiflora	Rmu_sc0005124.1_g000011 Rmu_sc0013144.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235950
rosa_rugosa	Rorug07G0215800
rosa_samantha	Rh7BG347400 Rh7BG349000 Rh7CG378000 Rh7DG354900
rosa_wichuraiana	Rw0G009420 Rw7G030560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	14, 17, 128, 190, 260
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	384
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	5 cut(s)	181, 215, 245, 298, 341
AluI	AGCT	5 cut(s)	181, 215, 245, 298, 341
Alw26I	GTCTC	1 cut(s)	31
AlwNI	CAGNNNCTG	2 cut(s)	301, 463
AoxI	GGCC	2 cut(s)	44, 261
ApeKI	GCWGC	4 cut(s)	158, 298, 301, 439
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	45, 406
AvaII	GGWCC	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	4 cut(s)	145, 285, 288, 451
BciT130I	CCWGG	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	31
BfmI	CTRYAG	1 cut(s)	302
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	6 cut(s)	15, 159, 261, 299, 302, 440
BlsI	GCNGC	6 cut(s)	16, 160, 262, 300, 303, 441
Bme1390I	CCNGG	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	406
BmgT120I	GGNCC	2 cut(s)	45, 406
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	35
BmrI	ACTGGG	1 cut(s)	465
BmsI	GCATC	3 cut(s)	108, 336, 358
BmuI	ACTGGG	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	45
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpuEI	CTTGAG	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	382
BsaHI	GRCGYC	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	47, 471
BseBI	CCWGG	1 cut(s)	35
BseGI	GGATG	2 cut(s)	327, 370
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	2 cut(s)	47, 471
BseXI	GCAGC	4 cut(s)	145, 285, 288, 451
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	46, 263
BsiWI	CGTACG	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	31
BsmBI	CGTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	2 cut(s)	46, 263
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	5 cut(s)	14, 17, 128, 190, 260
BspANI	GGCC	2 cut(s)	46, 263
BspCNI	CTCAG	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	408
BspMAI	CTGCAG	1 cut(s)	306
BsrI	ACTGG	2 cut(s)	47, 471
BssMI	GATC	1 cut(s)	271
BssNI	GRCGYC	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	95, 430
BstACI	GRCGYC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstBAI	YACGTR	1 cut(s)	382
BstC8I	GCNNGC	2 cut(s)	82, 156
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	2 cut(s)	327, 370
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 187
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	302
BstSNI	TACGTA	1 cut(s)	382
BstV1I	GCAGC	4 cut(s)	145, 285, 288, 451
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	46, 263
BtsCI	GGATG	2 cut(s)	327, 370
Cac8I	GCNNGC	2 cut(s)	82, 156
CaiI	CAGNNNCTG	2 cut(s)	301, 463
Cfr13I	GGNCC	2 cut(s)	45, 406
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	9 cut(s)	46, 158, 181, 215, 245, 263, 298, 341, 442
CviKI_1	RGCY	9 cut(s)	46, 158, 181, 215, 245, 263, 298, 341, 442
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
EciI	GGCGGA	1 cut(s)	32
Eco105I	TACGTA	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	1 cut(s)	358
FaiI	YATR	4 cut(s)	98, 198, 210, 356
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	1 cut(s)	354
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	6 cut(s)	15, 159, 261, 299, 302, 440
FokI	GGATG	2 cut(s)	314, 377
Fsp4HI	GCNGC	6 cut(s)	15, 159, 261, 299, 302, 440
GluI	GCNGC	6 cut(s)	15, 159, 261, 299, 302, 440
HaeIII	GGCC	2 cut(s)	46, 263
HgaI	GACGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	358
HinfI	GANTC	2 cut(s)	235, 466
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	177, 271
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	2 cut(s)	95, 430
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	2 cut(s)	154, 304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 187
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	358
Kzo9I	GATC	1 cut(s)	271
Lsp1109I	GCAGC	4 cut(s)	145, 285, 288, 451
LweI	GCATC	3 cut(s)	108, 336, 358
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	4 cut(s)	50, 53, 298, 445
MflI	RGATCY	1 cut(s)	271
MluCI	AATT	2 cut(s)	168, 376
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	3 cut(s)	13, 93, 355
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	298
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	151, 187
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	466
Pfl23II	CGTACG	1 cut(s)	382
PfoI	TCCNGGA	1 cut(s)	33
PkrI	GCNGC	6 cut(s)	16, 160, 262, 300, 303, 441
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Ppu21I	YACGTR	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspLI	CGTACG	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	2 cut(s)	45, 406
PstI	CTGCAG	1 cut(s)	306
PstNI	CAGNNNCTG	2 cut(s)	301, 463
PsuI	RGATCY	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	298
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	6 cut(s)	15, 159, 261, 299, 302, 440
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	2 cut(s)	45, 406
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	35
SfaNI	GCATC	3 cut(s)	108, 336, 358
SfcI	CTRYAG	1 cut(s)	302
SinI	GGWCC	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
SnaBI	TACGTA	1 cut(s)	382
Sse9I	AATT	2 cut(s)	168, 376
SsiI	CCGC	5 cut(s)	14, 17, 128, 190, 260
StyD4I	CCNGG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	95, 430
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	1 cut(s)	116
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	2 cut(s)	168, 376
TauI	GCSGC	2 cut(s)	17, 263
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	4 cut(s)	158, 298, 301, 439
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	3 cut(s)	47, 225, 371
VpaK11BI	GGWCC	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.