AT4G15510

PsbP domain-containing protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007216
Physical Location & Seq
Forward (+)
8860462 .. 8862693
2232 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G15510.3

Sequence Viewer

Length: 864 bp
ATGGCTTCATCTGCATTTGCGTTTCCTTCTTACATAATAACCAAAGGAGCCTCAACAGATTCTTTCAAATCAACTTCTCTGTCTTCTTCTCGATCTTTGGTTACAGATTTCCATCTTTTGTTCTCCAGACCCATCTCTTCCGGTCCTAAATACCAATCTGCCAAGTCCGCTAAACCGGAATCTCCAGTCGCCATAAACTGCTTAACCGATGCCAAACAGGTTTGTGCAGTTGGGAGGAGGAAGAGCATGATGATGGGCTTGCTCATGTCTGGTTTAATAGTTTCACAAGCCAATCTTCCAACAGCATTTGCTTCAACTCCAGTGTTTAGAGAATACATAGATACATTTGATGGATACTCCTTCAAGTACCCTCAAAATTGGATCCAAGTCCGAGGAGCTGGTGCTGATATATTCTTTAGAGACCCTGTTGTCCTCGACGAGAACCTTTCAGTCGAGTTTTCTTCGCCTTCTTCCTCAAATTACACGTCACTTGAAGACTTGGGATCCCCTGAAGAAGTAGGAAAGAGAGTACTTAGACAGTACTTGACTGAGTTTATGTCCACTAGACTCGGGGTTAAGCGCCAGGCCAACATTCTAAGCACTTCCTCTAGAGTTGCAGATGATGGTAAACTCTACTACCAAGTTGAGGTGAACATAAAGTCATACGCAAACAACAACGAGCTAGCTGTGATGCCACAAGATCGAGTGGCTCGTTTGGAATGGAACCGGCGCTACCTTGCAGTTCTAGGAGTTGAGAACGATAGACTCTATTCAATTAGACTCCAAACACCCGAGAAAGTTTTCCTGGAAGAAGAAAAAGATCTAAGAAGAGTCATGGATTCGTTTAGGGTCGAGAAGATTTAG

Protein Analysis

287

Amino Acids

32.27

Weight (kDa)

8.92

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 27 - 202 3.2e-43 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 428
AciI CCGC 1 cut(s) 168
AclWI GGATC 4 cut(s) 376, 389, 498, 511
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 3 cut(s) 368, 531, 542
AfiI CCNNNNNNNGG 1 cut(s) 646
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 5 cut(s) 67, 315, 364, 494, 774
AjiI CACGTC 1 cut(s) 486
AjnI CCWGG 2 cut(s) 582, 804
AluBI AGCT 3 cut(s) 398, 682, 686
AluI AGCT 3 cut(s) 398, 682, 686
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 4 cut(s) 376, 389, 498, 511
Ama87I CYCGRG 2 cut(s) 569, 791
AoxI GGCC 1 cut(s) 585
ArsI GACNNNNNNTTYG 2 cut(s) 470, 502
Asp700I GAANNNNTTC 1 cut(s) 800
AspLEI GCGC 2 cut(s) 582, 732
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 661
AsuNHI GCTAGC 1 cut(s) 682
AvaI CYCGRG 2 cut(s) 569, 791
AvaII GGWCC 1 cut(s) 143
BamHI GGATCC 2 cut(s) 381, 503
BbsI GAAGAC 2 cut(s) 75, 501
BccI CCATC 5 cut(s) 120, 140, 247, 344, 617
BciT130I CCWGG 2 cut(s) 584, 806
BciVI GTATCC 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 4 cut(s) 564, 609, 683, 746
BfoI RGCGCY 2 cut(s) 583, 733
BfuI GTATCC 1 cut(s) 347
BglII AGATCT 1 cut(s) 820
BmcAI AGTACT 2 cut(s) 531, 542
Bme1390I CCNGG 2 cut(s) 584, 806
Bme18I GGWCC 1 cut(s) 143
BmeT110I CYCGRG 2 cut(s) 569, 791
BmgBI CACGTC 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 4 cut(s) 49, 383, 505, 725
BmrFI CCNGG 2 cut(s) 584, 806
BmsI GCATC 2 cut(s) 199, 681
BmtI GCTAGC 1 cut(s) 686
BpiI GAAGAC 2 cut(s) 75, 501
BpmI CTGGAG 3 cut(s) 109, 168, 303
BsaBI GATNNNNATC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 391
BsaWI WCCGGW 2 cut(s) 140, 175
Bsc4I CCNNNNNNNGG 1 cut(s) 646
Bse118I RCCGGY 1 cut(s) 726
Bse1I ACTGG 2 cut(s) 185, 320
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 2 cut(s) 584, 806
BseDI CCNNGG 1 cut(s) 391
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 646
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 2 cut(s) 185, 320
BseRI GAGGAG 2 cut(s) 250, 408
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 1 cut(s) 587
BsiHKCI CYCGRG 2 cut(s) 569, 791
BsiSI CCGG 3 cut(s) 141, 176, 727
BslI CCNNNNNNNGG 1 cut(s) 646
BsmAI GTCTC 1 cut(s) 414
BsnI GGCC 1 cut(s) 587
Bso31I GGTCTC 1 cut(s) 414
BsoBI CYCGRG 2 cut(s) 569, 791
Bsp143I GATC 5 cut(s) 92, 381, 503, 700, 820
BspACI CCGC 1 cut(s) 168
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 1 cut(s) 541
BspLI GGNNCC 4 cut(s) 49, 383, 505, 725
BspOI GCTAGC 1 cut(s) 686
BspPI GGATC 4 cut(s) 376, 389, 498, 511
BspQI GCTCTTC 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 414
BsrFI RCCGGY 1 cut(s) 726
BsrI ACTGG 2 cut(s) 185, 320
BssAI RCCGGY 1 cut(s) 726
BssECI CCNNGG 1 cut(s) 391
BssMI GATC 5 cut(s) 92, 381, 503, 700, 820
Bst2UI CCWGG 2 cut(s) 584, 806
Bst4CI ACNGT 1 cut(s) 540
Bst6I CTCTTC 3 cut(s) 142, 236, 823
BstC8I GCNNGC 2 cut(s) 260, 684
BstDEI CTNAG 4 cut(s) 533, 549, 596, 824
BstH2I RGCGCY 2 cut(s) 583, 733
BstHHI GCGC 2 cut(s) 582, 732
BstKTI GATC 5 cut(s) 95, 384, 506, 703, 823
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 5 cut(s) 92, 381, 503, 700, 820
BstMWI GCNNNNNNNGC 2 cut(s) 11, 167
BstNI CCWGG 2 cut(s) 584, 806
BstSCI CCNGG 2 cut(s) 582, 804
BstV2I GAAGAC 2 cut(s) 75, 501
BstX2I RGATCY 3 cut(s) 381, 503, 820
BstYI RGATCY 3 cut(s) 381, 503, 820
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 1 cut(s) 587
BtrI CACGTC 1 cut(s) 486
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 2 cut(s) 260, 684
CfoI GCGC 2 cut(s) 582, 732
Cfr10I RCCGGY 1 cut(s) 726
Cfr13I GGNCC 1 cut(s) 143
Csp6I GTAC 3 cut(s) 367, 530, 541
CviAII CATG 3 cut(s) 247, 265, 835
CviJI RGCY 9 cut(s) 5, 50, 258, 290, 398, 587, 682, 686, 710
CviKI_1 RGCY 9 cut(s) 5, 50, 258, 290, 398, 587, 682, 686, 710
CviQI GTAC 3 cut(s) 367, 530, 541
DdeI CTNAG 4 cut(s) 533, 549, 596, 824
DpnI GATC 5 cut(s) 94, 383, 505, 702, 822
DpnII GATC 5 cut(s) 92, 381, 503, 700, 820
DrdI GACNNNNNNGTC 1 cut(s) 428
DseDI GACNNNNNNGTC 1 cut(s) 428
Eam1104I CTCTTC 3 cut(s) 142, 236, 823
EarI CTCTTC 3 cut(s) 142, 236, 823
Eco31I GGTCTC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 531
Eco88I CYCGRG 2 cut(s) 569, 791
EcoRII CCWGG 2 cut(s) 582, 804
FaeI CATG 3 cut(s) 250, 268, 838
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FatI CATG 3 cut(s) 246, 264, 834
FspBI CTAG 4 cut(s) 564, 609, 683, 746
GlaI GCGC 2 cut(s) 581, 731
GsuI CTGGAG 3 cut(s) 109, 168, 303
HaeII RGCGCY 2 cut(s) 583, 733
HaeIII GGCC 1 cut(s) 587
HapII CCGG 3 cut(s) 141, 176, 727
HhaI GCGC 2 cut(s) 582, 732
Hin1II CATG 3 cut(s) 250, 268, 838
Hin6I GCGC 2 cut(s) 580, 730
HinP1I GCGC 2 cut(s) 580, 730
HinfI GANTC 7 cut(s) 59, 179, 567, 765, 780, 831, 839
HpaII CCGG 3 cut(s) 141, 176, 727
HphI GGTGA 1 cut(s) 661
Hpy166II GTNNAC 3 cut(s) 561, 629, 652
Hpy188I TCNGA 1 cut(s) 392
Hpy188III TCNNGA 4 cut(s) 90, 126, 609, 853
Hpy8I GTNNAC 3 cut(s) 561, 629, 652
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 3 cut(s) 36, 370, 477
HpyCH4III ACNGT 1 cut(s) 540
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 4 cut(s) 14, 227, 617, 740
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 167
HpyF3I CTNAG 4 cut(s) 533, 549, 596, 824
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 3 cut(s) 250, 268, 838
HspAI GCGC 2 cut(s) 580, 730
Kzo9I GATC 5 cut(s) 92, 381, 503, 700, 820
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 2 cut(s) 47, 395
LweI GCATC 2 cut(s) 199, 681
MaeI CTAG 4 cut(s) 564, 609, 683, 746
MaeII ACGT 1 cut(s) 485
MaeIII GTNAC 2 cut(s) 100, 486
MalI GATC 5 cut(s) 94, 383, 505, 702, 822
MboI GATC 5 cut(s) 92, 381, 503, 700, 820
MflI RGATCY 3 cut(s) 381, 503, 820
MluCI AATT 3 cut(s) 376, 478, 774
MlyI GAGTC 4 cut(s) 561, 759, 774, 840
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 9 cut(s) 61, 228, 231, 381, 386, 443, 484, 616, 640
MroXI GAANNNNTTC 1 cut(s) 800
MseI TTAA 3 cut(s) 203, 275, 576
MslI CAYNNNNRTG 1 cut(s) 251
MspI CCGG 3 cut(s) 141, 176, 727
MspR9I CCNGG 2 cut(s) 584, 806
MvaI CCWGG 2 cut(s) 584, 806
MwoI GCNNNNNNNGC 2 cut(s) 11, 167
NdeII GATC 5 cut(s) 92, 381, 503, 700, 820
NheI GCTAGC 1 cut(s) 682
NlaIII CATG 3 cut(s) 250, 268, 838
NlaIV GGNNCC 4 cut(s) 49, 383, 505, 725
NmuCI GTSAC 1 cut(s) 486
PciSI GCTCTTC 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 709
PdmI GAANNNNTTC 1 cut(s) 800
PfeI GAWTC 3 cut(s) 59, 179, 839
PfoI TCCNGGA 1 cut(s) 804
PleI GAGTC 4 cut(s) 561, 759, 774, 839
PpsI GAGTC 4 cut(s) 561, 759, 774, 839
Psp6I CCWGG 2 cut(s) 582, 804
PspGI CCWGG 2 cut(s) 582, 804
PspN4I GGNNCC 4 cut(s) 49, 383, 505, 725
PspPI GGNCC 1 cut(s) 143
PsrI GAACNNNNNNTAC 2 cut(s) 716, 748
PsuI RGATCY 3 cut(s) 381, 503, 820
RsaI GTAC 3 cut(s) 368, 531, 542
RsaNI GTAC 3 cut(s) 367, 530, 541
RseI CAYNNNNRTG 1 cut(s) 251
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 3 cut(s) 203, 275, 576
Sau3AI GATC 5 cut(s) 92, 381, 503, 700, 820
Sau96I GGNCC 1 cut(s) 143
ScaI AGTACT 2 cut(s) 531, 542
SchI GAGTC 4 cut(s) 561, 759, 774, 840
ScrFI CCNGG 2 cut(s) 584, 806
SetI ASST 8 cut(s) 222, 400, 447, 488, 651, 684, 688, 738
SfaNI GCATC 2 cut(s) 199, 681
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 251
Sse9I AATT 3 cut(s) 376, 478, 774
SsiI CCGC 1 cut(s) 168
SspMI CTAG 4 cut(s) 564, 609, 683, 746
StyD4I CCNGG 2 cut(s) 582, 804
TaaI ACNGT 1 cut(s) 540
TaiI ACGT 1 cut(s) 488
TaqI TCGA 5 cut(s) 91, 435, 453, 703, 852
TasI AATT 3 cut(s) 376, 478, 774
TatI WGTACW 2 cut(s) 529, 540
TfiI GAWTC 3 cut(s) 59, 179, 839
Tru1I TTAA 3 cut(s) 203, 275, 576
Tru9I TTAA 3 cut(s) 203, 275, 576
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 486
Tsp45I GTSAC 1 cut(s) 486
TspRI CASTG 1 cut(s) 327
VpaK11BI GGWCC 1 cut(s) 143
XbaI TCTAGA 1 cut(s) 608
XmnI GAANNNNTTC 1 cut(s) 800
XspI CTAG 4 cut(s) 564, 609, 683, 746
ZrmI AGTACT 2 cut(s) 531, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.