Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007216

Physical Location & Seq

Genomic Coordinates Forward (+)

1749785 .. 1750315

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0021700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGTCGTTCCACCCCAATTAAAATTGTTAAGGTCCTATACCACAAAAATGAAAGCCAATCCCAGTTTGCTAAGTTTCTTGTTAATTTGTGGACTACTGCTATCGCACTACTCTTGTTACAGCCATTCCATTGGAAAAACATCTGAAGGTTTTTCCAGCCATTCCATGAATAAGCTAAAAGTGGTTTCAATCAAGGTTAGCAGTAGATCACCACCACCACCACCAAAACCCGGTGCTCCAGTTCATTTCAAATCACCACCGCCACGACCACCACCGCCTCCACCACAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

97

Amino Acids

10.52

Weight (kDa)

10.31

Isoelectric Point (pI)

78.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15510 AT4G15510 AT4G15510 AT4G15510 AT4G15510
fragaria_vesca	FvH4_6g07900 FvH4_6g07900 FvH4_6g07900 FvH4_6g07900
malus_domestica	MD04G1191200.v1.1 MD12G1203800.v1.1
prunus_persica	Prupe.6G309700_v2.0.a1 Prupe.6G309700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0457591
rosa_laevigata	RLG00000025207
rosa_multiflora	Rmu_sc0005321.1_g000005
rosa_roxburghii	Rroxscaffold_6G00421700
rosa_rugosa	Rorug03G0021700 Rorug03G0021800 Rorug03G0021900
rosa_samantha	Rh3AG082300 Rh3BG084600 Rh3CG084800 Rh3DG086000
rosa_wichuraiana	Rw3G007070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	260, 275
AcuI	CTGAAG	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	189, 250
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw21I	GWGCWC	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	201, 246
AvaII	GGWCC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	231
BmrI	ACTGGG	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	2 cut(s)	63, 239
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseNI	ACTGG	2 cut(s)	63, 239
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	206
BspACI	CCGC	2 cut(s)	260, 275
BsrI	ACTGG	2 cut(s)	63, 239
BssMI	GATC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	209
BstMBI	GATC	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	229
BstXI	CCANNNNNNTGG	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	33
CviAII	CATG	2 cut(s)	166, 291
CviJI	RGCY	5 cut(s)	56, 123, 159, 175, 289
CviKI_1	RGCY	5 cut(s)	56, 123, 159, 175, 289
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	1 cut(s)	208
DpnII	GATC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	33
FaeI	CATG	2 cut(s)	169, 294
FaiI	YATR	3 cut(s)	39, 167, 292
FatI	CATG	2 cut(s)	165, 290
GsuI	CTGGAG	1 cut(s)	222
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	2 cut(s)	169, 294
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	2 cut(s)	201, 246
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	145
Hpy8I	GTNNAC	1 cut(s)	92
HpyAV	CCTTC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	169, 294
Kzo9I	GATC	1 cut(s)	206
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	4 cut(s)	76, 169, 244, 252
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	1 cut(s)	208
MboI	GATC	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	3 cut(s)	17, 23, 84
MnlI	CCTC	1 cut(s)	288
MseI	TTAA	3 cut(s)	20, 29, 83
MslI	CAYNNNNRTG	2 cut(s)	47, 289
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	231
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	1 cut(s)	206
NlaIII	CATG	2 cut(s)	169, 294
PpuMI	RGGWCCY	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	33
PspPPI	RGGWCCY	1 cut(s)	33
RseI	CAYNNNNRTG	2 cut(s)	47, 289
SaqAI	TTAA	3 cut(s)	20, 29, 83
Sau3AI	GATC	1 cut(s)	206
Sau96I	GGNCC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	4 cut(s)	35, 151, 177, 198
SinI	GGWCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	2 cut(s)	47, 289
Sse9I	AATT	3 cut(s)	17, 23, 84
SsiI	CCGC	2 cut(s)	260, 275
StyD4I	CCNGG	1 cut(s)	229
TasI	AATT	3 cut(s)	17, 23, 84
Tru1I	TTAA	3 cut(s)	20, 29, 83
Tru9I	TTAA	3 cut(s)	20, 29, 83
TspDTI	ATGAA	3 cut(s)	65, 182, 233
VpaK11BI	GGWCC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.