Rh3CG084800

PsbP domain-containing protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0007216
Physical Location & Seq
Forward (+)
6618182 .. 6619784
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG084800.1

Sequence Viewer

Length: 903 bp
ATGGCAAGGTTGGTGATGATGCAGCAGCACCAACAGCACAGTCCACCTTCCTTCTCTCCTCTTCCTTCTCTCTCTGACTTTAATGGCCCCAAACTCCAAACTCAACTCCAGTATAGGAGAAAGGTATCACAGCTAAAACAAGCATTACATGTTGCAGCATCAAATGTAAAGAAGACTGTTACAGTGAGCCTCACTGAGCAAATGTCAGGCGAATCAAATAAGGGTAGCGCTGATTTTTCGTCCAAGACTAAAGATTTTGCAGTTCCTAGGAGGAATGCAATGGCCTTAATCTTGTCAGGTTGCATCTTCTCTCAAGTCAGTTTGCAAAGTCCTGCATTTGCTCAACAATCTGTTGCGTTGAGGGAGTACATAGATAGTTTTGATGGCTACTCATTCAAGTACCCTAAGAATTGGATTCAAGTTAAAGGTGCTGGAGCTGATATTTTCTTCAGAGACCCTTATATTCTTGATGAAAACCTAGCTGTGGATTTGTCCTCTCCTTCATCCTCGGATTACAAGAGCGTCGAAGATCTGGGTCCGCCAGAAGTAGCCGCAAAGCAAGTGCTTAGGCAGTATCTGACAGAGTTCATGTCTACAAGACTCGGGGTGAAGCGTGAGGGGAAAGTTCTTTCTACATCTTCAAGAGTTGCTGACGATGGGAAGCTTTATTACCAAGTTGAGGTGAACATAAAATCATATGCAAGCAACAATGAACTGGCTGTTATGCCGAAAGATCGTGTAGTTAGTATGGAATGGAACAGGAGGTACCTAACTGTTCTAGGAGTTGAAAACAACCAGTTGTATGCGTTGAGATTACAGACACCAGAAAATGTATTTGTGGAAGAAGAAAGTGATCTTCGCCGGGTTATGGAATCATTTAGAGTGAACAAGGTGGCTGCTTAA

Protein Analysis

300

Amino Acids

33.79

Weight (kDa)

9.1

Isoelectric Point (pI)

58.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 120 - 295 1e-36 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 765
AccB1I GGYRCC 1 cut(s) 765
AccI GTMKAC 1 cut(s) 593
AciI CCGC 2 cut(s) 539, 552
AcuI CTGAAG 1 cut(s) 433
AfaI GTAC 3 cut(s) 368, 401, 767
AfeI AGCGCT 1 cut(s) 229
AfiI CCNNNNNNNGG 3 cut(s) 484, 679, 868
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 4 cut(s) 397, 419, 642, 788
AluBI AGCT 4 cut(s) 133, 437, 482, 664
AluI AGCT 4 cut(s) 133, 437, 482, 664
Alw26I GTCTC 1 cut(s) 447
AlwNI CAGNNNCTG 1 cut(s) 577
Ama87I CYCGRG 1 cut(s) 602
Aor51HI AGCGCT 1 cut(s) 229
AoxI GGCC 2 cut(s) 85, 282
ApeKI GCWGC 4 cut(s) 22, 25, 155, 896
Asp718I GGTACC 1 cut(s) 765
AspA2I CCTAGG 1 cut(s) 266
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 2 cut(s) 86, 536
AsuC2I CCSGG 1 cut(s) 863
AsuHPI GGTGA 3 cut(s) 25, 619, 694
AvaI CYCGRG 1 cut(s) 602
AvaII GGWCC 1 cut(s) 536
AvrII CCTAGG 1 cut(s) 266
BanI GGYRCC 1 cut(s) 765
BarI GAAGNNNNNNTAC 2 cut(s) 653, 685
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 4 cut(s) 34, 37, 167, 883
BccI CCATC 2 cut(s) 377, 650
BcnI CCSGG 1 cut(s) 863
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 3 cut(s) 267, 479, 779
BfoI RGCGCY 1 cut(s) 231
BglII AGATCT 1 cut(s) 529
BisI GCNGC 5 cut(s) 23, 26, 156, 552, 897
BlnI CCTAGG 1 cut(s) 266
BlsI GCNGC 5 cut(s) 24, 27, 157, 553, 898
Bme1390I CCNGG 1 cut(s) 863
Bme18I GGWCC 1 cut(s) 536
BmeT110I CYCGRG 1 cut(s) 602
BmgT120I GGNCC 2 cut(s) 86, 536
BmiI GGNNCC 3 cut(s) 88, 537, 767
BmrFI CCNGG 1 cut(s) 863
BmsI GCATC 3 cut(s) 9, 167, 312
BpiI GAAGAC 1 cut(s) 179
BpmI CTGGAG 2 cut(s) 92, 453
Bpu10I CCTNAGC 1 cut(s) 566
BpuEI CTTGAG 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 863
BsaI GGTCTC 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 266, 507
Bsc4I CCNNNNNNNGG 3 cut(s) 484, 679, 868
Bse1I ACTGG 3 cut(s) 109, 720, 796
Bse3DI GCAATG 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 266, 507
BseGI GGATG 1 cut(s) 503
BseLI CCNNNNNNNGG 3 cut(s) 484, 679, 868
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 3 cut(s) 109, 720, 796
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 4 cut(s) 34, 37, 167, 883
BshFI GGCC 2 cut(s) 87, 284
BshNI GGYRCC 1 cut(s) 765
BsiHKCI CYCGRG 1 cut(s) 602
BsiSI CCGG 1 cut(s) 862
BslI CCNNNNNNNGG 3 cut(s) 484, 679, 868
BsmAI GTCTC 1 cut(s) 447
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 2 cut(s) 87, 284
Bso31I GGTCTC 1 cut(s) 447
BsoBI CYCGRG 1 cut(s) 602
Bsp143I GATC 3 cut(s) 529, 733, 853
BspACI CCGC 2 cut(s) 539, 552
BspANI GGCC 2 cut(s) 87, 284
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 3 cut(s) 88, 537, 767
BspT107I GGYRCC 1 cut(s) 765
BspTNI GGTCTC 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 285
BsrI ACTGG 3 cut(s) 109, 720, 796
BssECI CCNNGG 2 cut(s) 266, 507
BssMI GATC 3 cut(s) 529, 733, 853
BssT1I CCWWGG 1 cut(s) 266
Bst4CI ACNGT 4 cut(s) 41, 178, 184, 775
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 703
BstDEI CTNAG 3 cut(s) 195, 405, 566
BstF5I GGATG 1 cut(s) 503
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 3 cut(s) 532, 736, 856
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 3 cut(s) 529, 733, 853
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 861
BstV1I GCAGC 4 cut(s) 34, 37, 167, 883
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 2 cut(s) 87, 284
BtsCI GGATG 1 cut(s) 503
BtsIMutI CAGTG 2 cut(s) 189, 192
Cac8I GCNNGC 1 cut(s) 703
CaiI CAGNNNCTG 1 cut(s) 577
CfoI GCGC 1 cut(s) 230
Cfr13I GGNCC 2 cut(s) 86, 536
CseI GACGC 1 cut(s) 511
Csp6I GTAC 3 cut(s) 367, 400, 766
CviAII CATG 2 cut(s) 149, 589
CviQI GTAC 3 cut(s) 367, 400, 766
DdeI CTNAG 3 cut(s) 195, 405, 566
DpnI GATC 3 cut(s) 531, 735, 855
DpnII GATC 3 cut(s) 529, 733, 853
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
EciI GGCGGA 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 536
Eco47III AGCGCT 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 433
Eco88I CYCGRG 1 cut(s) 602
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 2 cut(s) 152, 592
FatI CATG 2 cut(s) 148, 588
FauNDI CATATG 1 cut(s) 697
FblI GTMKAC 1 cut(s) 593
Fnu4HI GCNGC 5 cut(s) 23, 26, 156, 552, 897
FokI GGATG 1 cut(s) 490
Fsp4HI GCNGC 5 cut(s) 23, 26, 156, 552, 897
FspBI CTAG 3 cut(s) 267, 479, 779
GlaI GCGC 1 cut(s) 229
GluI GCNGC 5 cut(s) 23, 26, 156, 552, 897
GsuI CTGGAG 2 cut(s) 92, 453
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 2 cut(s) 87, 284
HapII CCGG 1 cut(s) 862
HgaI GACGC 1 cut(s) 511
HhaI GCGC 1 cut(s) 230
Hin1II CATG 2 cut(s) 152, 592
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 4 cut(s) 212, 415, 600, 872
HpaII CCGG 1 cut(s) 862
HphI GGTGA 3 cut(s) 25, 619, 694
Hpy166II GTNNAC 4 cut(s) 44, 594, 685, 886
Hpy188I TCNGA 4 cut(s) 76, 452, 511, 579
Hpy188III TCNNGA 2 cut(s) 467, 642
Hpy8I GTNNAC 4 cut(s) 44, 594, 685, 886
Hpy99I CGWCG 1 cut(s) 527
HpyAV CCTTC 4 cut(s) 57, 61, 75, 510
HpyCH4III ACNGT 4 cut(s) 41, 178, 184, 775
HpyCH4V TGCA 8 cut(s) 22, 155, 260, 278, 303, 325, 335, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 3 cut(s) 195, 405, 566
Hsp92II CATG 2 cut(s) 152, 592
HspAI GCGC 1 cut(s) 228
KpnI GGTACC 1 cut(s) 769
Kzo9I GATC 3 cut(s) 529, 733, 853
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 4 cut(s) 34, 37, 167, 883
LweI GCATC 3 cut(s) 9, 167, 312
MaeI CTAG 3 cut(s) 267, 479, 779
MaeIII GTNAC 1 cut(s) 178
MalI GATC 3 cut(s) 531, 735, 855
MboI GATC 3 cut(s) 529, 733, 853
MboII GAAGA 9 cut(s) 53, 184, 298, 439, 539, 630, 848, 854, 857
MflI RGATCY 1 cut(s) 529
MluCI AATT 1 cut(s) 409
MlyI GAGTC 1 cut(s) 594
MnlI CCTC 9 cut(s) 69, 200, 264, 354, 505, 517, 610, 673, 756
MseI TTAA 4 cut(s) 81, 287, 423, 901
MspI CCGG 1 cut(s) 862
MspR9I CCNGG 1 cut(s) 863
Mva1269I GAATGC 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 34
NciI CCSGG 1 cut(s) 863
NdeI CATATG 1 cut(s) 697
NdeII GATC 3 cut(s) 529, 733, 853
NlaIII CATG 2 cut(s) 152, 592
NlaIV GGNNCC 3 cut(s) 88, 537, 767
NspI RCATGY 1 cut(s) 152
PciI ACATGT 1 cut(s) 148
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 3 cut(s) 212, 415, 872
PkrI GCNGC 5 cut(s) 24, 27, 157, 553, 898
PleI GAGTC 1 cut(s) 594
PpsI GAGTC 1 cut(s) 594
PscI ACATGT 1 cut(s) 148
PspN4I GGNNCC 3 cut(s) 88, 537, 767
PspPI GGNCC 2 cut(s) 86, 536
PsrI GAACNNNNNNTAC 2 cut(s) 749, 781
PstNI CAGNNNCTG 1 cut(s) 577
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 3 cut(s) 368, 401, 767
RsaNI GTAC 3 cut(s) 367, 400, 766
SaqAI TTAA 4 cut(s) 81, 287, 423, 901
SatI GCNGC 5 cut(s) 23, 26, 156, 552, 897
Sau3AI GATC 3 cut(s) 529, 733, 853
Sau96I GGNCC 2 cut(s) 86, 536
SchI GAGTC 1 cut(s) 594
ScrFI CCNGG 1 cut(s) 863
SfaNI GCATC 3 cut(s) 9, 167, 312
SinI GGWCC 1 cut(s) 536
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
Sse9I AATT 1 cut(s) 409
SsiI CCGC 2 cut(s) 539, 552
SspMI CTAG 3 cut(s) 267, 479, 779
StyD4I CCNGG 1 cut(s) 861
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 4 cut(s) 41, 178, 184, 775
TaqI TCGA 1 cut(s) 525
TasI AATT 1 cut(s) 409
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 554
TfiI GAWTC 3 cut(s) 212, 415, 872
Tru1I TTAA 4 cut(s) 81, 287, 423, 901
Tru9I TTAA 4 cut(s) 81, 287, 423, 901
TscAI CASTG 2 cut(s) 189, 199
TseI GCWGC 4 cut(s) 22, 25, 155, 896
TspDTI ATGAA 4 cut(s) 486, 492, 577, 726
TspRI CASTG 2 cut(s) 189, 199
VpaK11BI GGWCC 1 cut(s) 536
XceI RCATGY 1 cut(s) 152
XmaJI CCTAGG 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 593
XspI CTAG 3 cut(s) 267, 479, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.