Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007216

Physical Location & Seq

Genomic Coordinates Forward (+)

1762325 .. 1764992

Gene Structure 2668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0021900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGGGTCCTCCCTGCAATCACGAATGCACGCACCAGTACGCAGCCCTTATGCAGATTCCATAGCTGCATGTGAGAAGTCAGTTTTCTGTGATACATTTCATTTAGGGGAAACGGGTTGGAGGGACTGCAGTTCGTGCCACAAGCCTCTCCACTGTGGATGCGTAGCCTCTAGGTCATTATATGAGTGCCTGGATTACGGGGGTGTAGGGTGCATTGCCTGTGCAAACAGTTCTCAACCTCGTGTGATTTGTGCACTTGTCGAGTTGTCATGGAGGTTTGGACTTGTGGAGCAAGGCAGCAGGCCGAGCAAGGCAGCACAAGGCGTTTGTGCACTTGTGGACAGAACTAGGAAAATTTTGAAGTGCCAGTGCCCTCCTGTGGGTTGGTTGAAGGTGAATTTTGATGGAGATTTTAGTCCGAGCTCTGGCAAAGCAGCAATTGGTTTCTTAGTCCGTGACTCTCAAGGGACTTTTTTGGGAGCAGTGGGGAAGGTAGTTACTCGAGTTCAGTCTGCTGAACATGTCGAGCTCTTGGCTTGTAAGGAAGCATTTGGTTATGTGATGGAACATGGTCTATGTCCAGTAATTTTGGAGACTGATTGTTTGGTTTTGAAGCAACAAGTGTGTCAGGAGGAGCTGCAAAATTATTCTATTCTTGGAAGGTTATATGAGGACCTCAGACAAGATTTGAAAGAGGTGAACCAAGTTAGAATTATTCATGCTAGAAGAGAGGCAAATATGGCTGCGCACAAATTGGCAGCTCATGCTGCATATTTTGATCAAGCTTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

264

Amino Acids

29.0

Weight (kDa)

7.47

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_VAL1_N	PF25813	32 - 79	3.7e-23	VAL1-like, N-terminal zinc finger domain
RVT_3	PF13456	133 - 256	7e-23	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15510 AT4G15510 AT4G15510 AT4G15510 AT4G15510
fragaria_vesca	FvH4_6g07900 FvH4_6g07900 FvH4_6g07900 FvH4_6g07900
malus_domestica	MD04G1191200.v1.1 MD12G1203800.v1.1
prunus_persica	Prupe.6G309700_v2.0.a1 Prupe.6G309700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0457591
rosa_laevigata	RLG00000025207
rosa_multiflora	Rmu_sc0005321.1_g000005
rosa_roxburghii	Rroxscaffold_6G00421700
rosa_rugosa	Rorug03G0021700 Rorug03G0021800 Rorug03G0021900
rosa_samantha	Rh3AG082300 Rh3BG084600 Rh3CG084800 Rh3DG086000
rosa_wichuraiana	Rw3G007070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	747
AcsI	RAATTY	2 cut(s)	354, 397
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	3 cut(s)	379, 380, 425
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	4 cut(s)	361, 391, 613, 691
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	6 cut(s)	65, 423, 529, 637, 761, 785
AluI	AGCT	6 cut(s)	65, 423, 529, 637, 761, 785
Alw21I	GWGCWC	4 cut(s)	256, 334, 425, 531
Alw26I	GTCTC	1 cut(s)	587
Alw44I	GTGCAC	2 cut(s)	252, 330
Ama87I	CYCGRG	1 cut(s)	501
AoxI	GGCC	1 cut(s)	302
ApaLI	GTGCAC	2 cut(s)	252, 330
ApeKI	GCWGC	9 cut(s)	42, 65, 297, 314, 434, 637, 743, 758, 767
ApoI	RAATTY	2 cut(s)	354, 397
ArsI	GACNNNNNNTTYG	2 cut(s)	586, 618
AspLEI	GCGC	1 cut(s)	748
AspS9I	GGNCC	2 cut(s)	6, 673
AsuHPI	GGTGA	2 cut(s)	406, 709
AvaI	CYCGRG	1 cut(s)	501
AvaII	GGWCC	2 cut(s)	6, 673
BaeGI	GKGCMC	3 cut(s)	256, 334, 374
BanII	GRGCYC	2 cut(s)	425, 531
BauI	CACGAG	1 cut(s)	240
Bbv12I	GWGCWC	4 cut(s)	256, 334, 425, 531
BbvI	GCAGC	9 cut(s)	52, 54, 309, 326, 446, 624, 730, 754, 770
BccI	CCATC	2 cut(s)	398, 556
BciT130I	CCWGG	1 cut(s)	191
BclI	TGATCA	1 cut(s)	778
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	3 cut(s)	171, 348, 723
BfmI	CTRYAG	1 cut(s)	127
BisI	GCNGC	9 cut(s)	43, 66, 298, 315, 435, 638, 744, 759, 768
BlsI	GCNGC	9 cut(s)	44, 67, 299, 316, 436, 639, 745, 760, 769
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	2 cut(s)	6, 673
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	2 cut(s)	6, 673
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	3 cut(s)	379, 380, 425
Bse1I	ACTGG	3 cut(s)	35, 367, 581
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	164
BseLI	CCNNNNNNNGG	3 cut(s)	379, 380, 425
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	691
BseNI	ACTGG	3 cut(s)	35, 367, 581
BseRI	GAGGAG	1 cut(s)	647
BseSI	GKGCMC	3 cut(s)	256, 334, 374
BseXI	GCAGC	9 cut(s)	52, 54, 309, 326, 446, 624, 730, 754, 770
BshFI	GGCC	1 cut(s)	304
BsiHKAI	GWGCWC	4 cut(s)	256, 334, 425, 531
BsiHKCI	CYCGRG	1 cut(s)	501
BslFI	GGGAC	2 cut(s)	137, 481
BslI	CCNNNNNNNGG	3 cut(s)	379, 380, 425
BsmAI	GTCTC	1 cut(s)	587
BsmFI	GGGAC	2 cut(s)	137, 481
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	304
BsoBI	CYCGRG	1 cut(s)	501
Bsp1286I	GDGCHC	5 cut(s)	256, 334, 374, 425, 531
Bsp143I	GATC	1 cut(s)	778
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	1 cut(s)	690
BspLI	GGNNCC	1 cut(s)	7
BspMAI	CTGCAG	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	3 cut(s)	35, 367, 581
BssMI	GATC	1 cut(s)	778
BssSI	CACGAG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	155, 230
Bst6I	CTCTTC	1 cut(s)	721
BstAPI	GCANNNNNTGC	2 cut(s)	135, 764
BstC8I	GCNNGC	2 cut(s)	30, 302
BstDEI	CTNAG	2 cut(s)	448, 677
BstF5I	GGATG	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	748
BstKTI	GATC	1 cut(s)	781
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	1 cut(s)	778
BstMWI	GCNNNNNNNGC	5 cut(s)	135, 306, 740, 764, 767
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	2 cut(s)	72, 524
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	127
BstSLI	GKGCMC	3 cut(s)	256, 334, 374
BstV1I	GCAGC	9 cut(s)	52, 54, 309, 326, 446, 624, 730, 754, 770
BsuRI	GGCC	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	164
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	3 cut(s)	151, 374, 489
Cac8I	GCNNGC	2 cut(s)	30, 302
CfoI	GCGC	1 cut(s)	748
Cfr13I	GGNCC	2 cut(s)	6, 673
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	6 cut(s)	69, 270, 521, 569, 719, 764
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	2 cut(s)	448, 677
DpnI	GATC	1 cut(s)	780
DpnII	GATC	1 cut(s)	778
Eam1104I	CTCTTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	721
Ecl136II	GAGCTC	2 cut(s)	423, 529
Eco24I	GRGCYC	2 cut(s)	425, 531
Eco47I	GGWCC	2 cut(s)	6, 673
Eco53kI	GAGCTC	2 cut(s)	423, 529
Eco88I	CYCGRG	1 cut(s)	501
EcoICRI	GAGCTC	2 cut(s)	423, 529
EcoO109I	RGGNCCY	2 cut(s)	6, 673
EcoRII	CCWGG	1 cut(s)	189
EcoT38I	GRGCYC	2 cut(s)	425, 531
FaeI	CATG	6 cut(s)	72, 273, 524, 572, 722, 767
FaqI	GGGAC	2 cut(s)	137, 481
FatI	CATG	6 cut(s)	68, 269, 520, 568, 718, 763
FbaI	TGATCA	1 cut(s)	778
Fnu4HI	GCNGC	9 cut(s)	43, 66, 298, 315, 435, 638, 744, 759, 768
FokI	GGATG	1 cut(s)	171
FriOI	GRGCYC	2 cut(s)	425, 531
Fsp4HI	GCNGC	9 cut(s)	43, 66, 298, 315, 435, 638, 744, 759, 768
FspBI	CTAG	3 cut(s)	171, 348, 723
FspI	TGCGCA	1 cut(s)	747
GlaI	GCGC	1 cut(s)	747
GluI	GCNGC	9 cut(s)	43, 66, 298, 315, 435, 638, 744, 759, 768
HaeIII	GGCC	1 cut(s)	304
HhaI	GCGC	1 cut(s)	748
Hin1II	CATG	6 cut(s)	72, 273, 524, 572, 722, 767
Hin6I	GCGC	1 cut(s)	746
HinP1I	GCGC	1 cut(s)	746
HindIII	AAGCTT	1 cut(s)	783
HinfI	GANTC	2 cut(s)	56, 458
HphI	GGTGA	2 cut(s)	406, 709
Hpy166II	GTNNAC	4 cut(s)	254, 332, 340, 700
Hpy188I	TCNGA	2 cut(s)	420, 680
Hpy188III	TCNNGA	2 cut(s)	21, 629
Hpy8I	GTNNAC	4 cut(s)	254, 332, 340, 700
HpyAV	CCTTC	3 cut(s)	385, 484, 654
HpyCH4III	ACNGT	2 cut(s)	155, 230
HpyF10VI	GCNNNNNNNGC	5 cut(s)	135, 306, 740, 764, 767
HpyF3I	CTNAG	2 cut(s)	448, 677
Hsp92II	CATG	6 cut(s)	72, 273, 524, 572, 722, 767
HspAI	GCGC	1 cut(s)	746
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	1 cut(s)	778
LmnI	GCTCC	3 cut(s)	289, 479, 634
Lsp1109I	GCAGC	9 cut(s)	52, 54, 309, 326, 446, 624, 730, 754, 770
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	3 cut(s)	171, 348, 723
MaeIII	GTNAC	2 cut(s)	455, 496
MalI	GATC	1 cut(s)	780
MboI	GATC	1 cut(s)	778
MboII	GAAGA	1 cut(s)	738
MfeI	CAATTG	1 cut(s)	438
MhlI	GDGCHC	5 cut(s)	256, 334, 374, 425, 531
MluCI	AATT	7 cut(s)	354, 397, 438, 585, 643, 711, 752
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	191
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	5 cut(s)	135, 306, 740, 764, 767
NdeII	GATC	1 cut(s)	778
NlaIII	CATG	6 cut(s)	72, 273, 524, 572, 722, 767
NlaIV	GGNNCC	1 cut(s)	7
NmeAIII	GCCGAG	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	455
NsbI	TGCGCA	1 cut(s)	747
NspI	RCATGY	2 cut(s)	72, 524
PaeR7I	CTCGAG	1 cut(s)	501
PciI	ACATGT	1 cut(s)	520
PctI	GAATGC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	9 cut(s)	44, 67, 299, 316, 436, 639, 745, 760, 769
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
PpuMI	RGGWCCY	2 cut(s)	6, 673
PscI	ACATGT	1 cut(s)	520
Psp124BI	GAGCTC	2 cut(s)	425, 531
Psp5II	RGGWCCY	2 cut(s)	6, 673
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	2 cut(s)	6, 673
PspPPI	RGGWCCY	2 cut(s)	6, 673
PspXI	VCTCGAGB	1 cut(s)	501
PstI	CTGCAG	1 cut(s)	131
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SacI	GAGCTC	2 cut(s)	425, 531
SatI	GCNGC	9 cut(s)	43, 66, 298, 315, 435, 638, 744, 759, 768
Sau3AI	GATC	1 cut(s)	778
Sau96I	GGNCC	2 cut(s)	6, 673
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	5 cut(s)	256, 334, 374, 425, 531
SfaNI	GCATC	1 cut(s)	149
SfcI	CTRYAG	1 cut(s)	127
Sfr274I	CTCGAG	1 cut(s)	501
SinI	GGWCC	2 cut(s)	6, 673
SlaI	CTCGAG	1 cut(s)	501
SmlI	CTYRAG	2 cut(s)	462, 501
SmoI	CTYRAG	2 cut(s)	462, 501
Sse9I	AATT	7 cut(s)	354, 397, 438, 585, 643, 711, 752
SspMI	CTAG	3 cut(s)	171, 348, 723
SstI	GAGCTC	2 cut(s)	425, 531
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	155, 230
TaqI	TCGA	3 cut(s)	261, 502, 525
TasI	AATT	7 cut(s)	354, 397, 438, 585, 643, 711, 752
TfiI	GAWTC	1 cut(s)	56
TscAI	CASTG	3 cut(s)	158, 374, 489
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	9 cut(s)	42, 65, 297, 314, 434, 637, 743, 758, 767
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	2 cut(s)	89, 707
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	3 cut(s)	158, 374, 489
VneI	GTGCAC	2 cut(s)	252, 330
VpaK11BI	GGWCC	2 cut(s)	6, 673
XapI	RAATTY	2 cut(s)	354, 397
XceI	RCATGY	2 cut(s)	72, 524
XhoI	CTCGAG	1 cut(s)	501
XspI	CTAG	3 cut(s)	171, 348, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.