Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007216

Physical Location & Seq

Genomic Coordinates Reverse (-)

43005738 .. 43007081

Gene Structure 1344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025207

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCTAGGTTGGTGATGATGCAGCAGCACCAACAGTACAGTCCACCTTCCTTCTCTCCTCTTCCTTCTCTCTCTGACTTTAATGGCCCCAAAATCCAAACTCAACTCCAGTATAGGAGAAAGGTATCACAGCTAAAAGAAGCACTACATGTTGCAGCATCAAATGTAAAGAAGAAGACTCTTACGGTAAGCCTCACTGAGCAAATGTCAGGTGAAGCAAATAAGGGTAGTGCTGATTTTTCGTCCAAGACTAAAGATTTTGCAGTTCCTAGGAGGAATGCAATGGCCTTAATCTTGTCAGGTTGCATCTTCTCTCAAGTCAGTTTGCAAAGTCCTGCATTTGCTCAACAATCTGTTGCGTTGAGGGAGTACATAGATAGTTTTGATGGCTACTCATTCAAGTACCCTAATAATTGGATTCAAGTCAAAGGTGCTGGAGCTGACATTTTCTTTAGAGACCCTTATATTCTTGATGAAAACCTAGCTGTGGATTTGTCCTCTCCTTCATCCTCAAATTACAAGAGCGTCGAAGATCTGGGTCCGCCAGAAGTAGCCGCAAAGCAAGTGCTTAGGCAGTATCTGACAGAGTTCATGTCTACGAGACTTGGGGTGAAGCGTGAGGGGAAAGTTCTTTCTACATCCTCAAGAGTTGCTGACGATGGGAAGCTTTATTACCAAGTTGAGGTGAACATAAAATCATATGCAAGCAACAATGAACTGGCTGTTATGCCAAAAGATCGTGTAGTTAGTATGGAATGGAACAGGCGGTACCTTACTGTTCTAGGAGTTGAAAACAACCAGTTGTATGCGTTGAGATTACAGACACCAGAAAATGTATTTGTGGAAGAAGAAAGTGATCTACGCCGGGTTATGGAATCATTTAGAGTGAACAAGGTGGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

302

Amino Acids

33.93

Weight (kDa)

9.08

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	121 - 296	6e-37	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15510 AT4G15510 AT4G15510 AT4G15510 AT4G15510
fragaria_vesca	FvH4_6g07900 FvH4_6g07900 FvH4_6g07900 FvH4_6g07900
malus_domestica	MD04G1191200.v1.1 MD12G1203800.v1.1
prunus_persica	Prupe.6G309700_v2.0.a1 Prupe.6G309700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0457591
rosa_laevigata	RLG00000025207
rosa_multiflora	Rmu_sc0005321.1_g000005
rosa_roxburghii	Rroxscaffold_6G00421700
rosa_rugosa	Rorug03G0021700 Rorug03G0021800 Rorug03G0021900
rosa_samantha	Rh3AG082300 Rh3BG084600 Rh3CG084800 Rh3DG086000
rosa_wichuraiana	Rw3G007070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	768
AccB1I	GGYRCC	1 cut(s)	768
AccI	GTMKAC	1 cut(s)	596
AciI	CCGC	3 cut(s)	542, 555, 766
AfaI	GTAC	4 cut(s)	38, 371, 404, 770
AfiI	CCNNNNNNNGG	3 cut(s)	487, 682, 871
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	3 cut(s)	400, 422, 791
AluBI	AGCT	4 cut(s)	133, 440, 485, 667
AluI	AGCT	4 cut(s)	133, 440, 485, 667
Alw26I	GTCTC	2 cut(s)	450, 595
AlwNI	CAGNNNCTG	1 cut(s)	580
AoxI	GGCC	2 cut(s)	85, 285
ApeKI	GCWGC	4 cut(s)	22, 25, 155, 899
Asp718I	GGTACC	1 cut(s)	768
AspA2I	CCTAGG	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	86, 539
AsuC2I	CCSGG	1 cut(s)	866
AsuHPI	GGTGA	4 cut(s)	25, 224, 622, 697
AvaII	GGWCC	1 cut(s)	539
AvrII	CCTAGG	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	768
BarI	GAAGNNNNNNTAC	2 cut(s)	656, 688
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	4 cut(s)	34, 37, 167, 886
BccI	CCATC	2 cut(s)	380, 653
BcnI	CCSGG	1 cut(s)	866
BcoDI	GTCTC	2 cut(s)	450, 595
BfaI	CTAG	4 cut(s)	6, 270, 482, 782
BglII	AGATCT	1 cut(s)	532
BisI	GCNGC	5 cut(s)	23, 26, 156, 555, 900
BlnI	CCTAGG	1 cut(s)	269
BlsI	GCNGC	5 cut(s)	24, 27, 157, 556, 901
Bme1390I	CCNGG	1 cut(s)	866
Bme18I	GGWCC	1 cut(s)	539
BmgT120I	GGNCC	2 cut(s)	86, 539
BmiI	GGNNCC	3 cut(s)	88, 540, 770
BmrFI	CCNGG	1 cut(s)	866
BmsI	GCATC	3 cut(s)	9, 167, 315
BpiI	GAAGAC	1 cut(s)	182
BpmI	CTGGAG	2 cut(s)	92, 456
Bpu10I	CCTNAGC	1 cut(s)	569
BpuEI	CTTGAG	2 cut(s)	300, 628
BpuMI	CCSGG	1 cut(s)	866
BsaI	GGTCTC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	3 cut(s)	487, 682, 871
Bse1I	ACTGG	3 cut(s)	109, 723, 799
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	506, 638
BseLI	CCNNNNNNNGG	3 cut(s)	487, 682, 871
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	3 cut(s)	109, 723, 799
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	4 cut(s)	34, 37, 167, 886
BshFI	GGCC	2 cut(s)	87, 287
BshNI	GGYRCC	1 cut(s)	768
BsiSI	CCGG	1 cut(s)	865
BslI	CCNNNNNNNGG	3 cut(s)	487, 682, 871
BsmAI	GTCTC	2 cut(s)	450, 595
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	87, 287
Bso31I	GGTCTC	1 cut(s)	450
Bsp143I	GATC	3 cut(s)	532, 736, 856
BspACI	CCGC	3 cut(s)	542, 555, 766
BspANI	GGCC	2 cut(s)	87, 287
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	3 cut(s)	88, 540, 770
BspT107I	GGYRCC	1 cut(s)	768
BspTNI	GGTCTC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	3 cut(s)	109, 723, 799
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	3 cut(s)	532, 736, 856
BssT1I	CCWWGG	1 cut(s)	269
Bst4CI	ACNGT	4 cut(s)	36, 41, 187, 778
Bst6I	CTCTTC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	2 cut(s)	198, 569
BstF5I	GGATG	2 cut(s)	506, 638
BstKTI	GATC	3 cut(s)	535, 739, 859
BstMAI	GTCTC	2 cut(s)	450, 595
BstMBI	GATC	3 cut(s)	532, 736, 856
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	864
BstV1I	GCAGC	4 cut(s)	34, 37, 167, 886
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	2 cut(s)	87, 287
BtsCI	GGATG	2 cut(s)	506, 638
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	706
CaiI	CAGNNNCTG	1 cut(s)	580
Cfr13I	GGNCC	2 cut(s)	86, 539
CseI	GACGC	1 cut(s)	514
Csp6I	GTAC	4 cut(s)	37, 370, 403, 769
CviAII	CATG	2 cut(s)	149, 592
CviQI	GTAC	4 cut(s)	37, 370, 403, 769
DdeI	CTNAG	2 cut(s)	198, 569
DpnI	GATC	3 cut(s)	534, 738, 858
DpnII	GATC	3 cut(s)	532, 736, 856
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	539
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	2 cut(s)	152, 595
FatI	CATG	2 cut(s)	148, 591
FauNDI	CATATG	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	596
Fnu4HI	GCNGC	5 cut(s)	23, 26, 156, 555, 900
FokI	GGATG	2 cut(s)	493, 625
Fsp4HI	GCNGC	5 cut(s)	23, 26, 156, 555, 900
FspBI	CTAG	4 cut(s)	6, 270, 482, 782
GluI	GCNGC	5 cut(s)	23, 26, 156, 555, 900
GsuI	CTGGAG	2 cut(s)	92, 456
HaeIII	GGCC	2 cut(s)	87, 287
HapII	CCGG	1 cut(s)	865
HgaI	GACGC	1 cut(s)	514
Hin1II	CATG	2 cut(s)	152, 595
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	3 cut(s)	178, 418, 875
HpaII	CCGG	1 cut(s)	865
HphI	GGTGA	4 cut(s)	25, 224, 622, 697
Hpy166II	GTNNAC	4 cut(s)	44, 597, 688, 889
Hpy188I	TCNGA	2 cut(s)	76, 582
Hpy188III	TCNNGA	2 cut(s)	470, 645
Hpy8I	GTNNAC	4 cut(s)	44, 597, 688, 889
Hpy99I	CGWCG	1 cut(s)	530
HpyAV	CCTTC	4 cut(s)	57, 61, 75, 513
HpyCH4III	ACNGT	4 cut(s)	36, 41, 187, 778
HpyCH4V	TGCA	8 cut(s)	22, 155, 263, 281, 306, 328, 338, 704
HpyF3I	CTNAG	2 cut(s)	198, 569
Hsp92II	CATG	2 cut(s)	152, 595
KpnI	GGTACC	1 cut(s)	772
Kzo9I	GATC	3 cut(s)	532, 736, 856
LmnI	GCTCC	1 cut(s)	437
Lsp1109I	GCAGC	4 cut(s)	34, 37, 167, 886
LweI	GCATC	3 cut(s)	9, 167, 315
MaeI	CTAG	4 cut(s)	6, 270, 482, 782
MalI	GATC	3 cut(s)	534, 738, 858
MboI	GATC	3 cut(s)	532, 736, 856
MboII	GAAGA	7 cut(s)	53, 184, 187, 301, 542, 857, 860
MflI	RGATCY	1 cut(s)	532
MluCI	AATT	2 cut(s)	412, 514
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	9 cut(s)	69, 203, 267, 357, 508, 520, 613, 652, 676
MseI	TTAA	3 cut(s)	81, 290, 904
MspI	CCGG	1 cut(s)	865
MspR9I	CCNGG	1 cut(s)	866
Mva1269I	GAATGC	1 cut(s)	283
NciI	CCSGG	1 cut(s)	866
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	3 cut(s)	532, 736, 856
NlaIII	CATG	2 cut(s)	152, 595
NlaIV	GGNNCC	3 cut(s)	88, 540, 770
NspI	RCATGY	1 cut(s)	152
PciI	ACATGT	1 cut(s)	148
PctI	GAATGC	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	418, 875
PkrI	GCNGC	5 cut(s)	24, 27, 157, 556, 901
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PscI	ACATGT	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	88, 540, 770
PspPI	GGNCC	2 cut(s)	86, 539
PsrI	GAACNNNNNNTAC	2 cut(s)	752, 784
PstNI	CAGNNNCTG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	532
RsaI	GTAC	4 cut(s)	38, 371, 404, 770
RsaNI	GTAC	4 cut(s)	37, 370, 403, 769
SaqAI	TTAA	3 cut(s)	81, 290, 904
SatI	GCNGC	5 cut(s)	23, 26, 156, 555, 900
Sau3AI	GATC	3 cut(s)	532, 736, 856
Sau96I	GGNCC	2 cut(s)	86, 539
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	866
SfaNI	GCATC	3 cut(s)	9, 167, 315
SinI	GGWCC	1 cut(s)	539
SmlI	CTYRAG	2 cut(s)	315, 643
SmoI	CTYRAG	2 cut(s)	315, 643
Sse9I	AATT	2 cut(s)	412, 514
SsiI	CCGC	3 cut(s)	542, 555, 766
SspMI	CTAG	4 cut(s)	6, 270, 482, 782
StyD4I	CCNGG	1 cut(s)	864
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	4 cut(s)	36, 41, 187, 778
TaqI	TCGA	1 cut(s)	528
TasI	AATT	2 cut(s)	412, 514
TatI	WGTACW	2 cut(s)	36, 369
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	2 cut(s)	418, 875
Tru1I	TTAA	3 cut(s)	81, 290, 904
Tru9I	TTAA	3 cut(s)	81, 290, 904
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	4 cut(s)	22, 25, 155, 899
TspDTI	ATGAA	4 cut(s)	489, 495, 580, 729
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	539
XceI	RCATGY	1 cut(s)	152
XmaJI	CCTAGG	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	596
XspI	CTAG	4 cut(s)	6, 270, 482, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.